Wall clock time and date at job start Tue Mar 31 2020 17:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47447 * 2 1 4 4 C 1.46498 * 119.99958 * 268.06139 * 3 2 1 5 5 C 1.50702 * 109.46961 * 95.41213 * 4 3 2 6 6 H 1.07999 * 120.00374 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99893 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99729 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00305 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46945 * 59.99721 * 9 7 5 11 11 H 1.48494 * 109.47244 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47006 * 300.00411 * 9 7 5 13 13 C 1.34780 * 120.00049 * 88.05383 * 3 2 1 14 14 O 1.21282 * 119.99846 * 4.65336 * 13 3 2 15 15 C 1.50703 * 119.99922 * 184.64953 * 13 3 2 16 16 H 1.08996 * 109.49982 * 45.58476 * 15 13 3 17 17 C 1.53038 * 109.49392 * 285.51894 * 15 13 3 18 18 C 1.53047 * 109.53726 * 178.71544 * 17 15 13 19 19 C 1.53194 * 109.33707 * 61.31726 * 18 17 15 20 20 N 1.46928 * 108.77749 * 305.38375 * 19 18 17 21 21 S 1.65599 * 120.63122 * 233.63144 * 20 19 18 22 22 O 1.42100 * 104.27747 * 26.04351 * 21 20 19 23 23 O 1.42094 * 104.27857 * 153.90326 * 21 20 19 24 24 C 1.81395 * 104.44778 * 269.97794 * 21 20 19 25 25 C 1.53003 * 109.47314 * 179.97438 * 24 21 20 26 26 C 1.46931 * 118.73889 * 53.60512 * 20 19 18 27 27 H 1.09009 * 109.46616 * 58.48427 * 1 2 3 28 28 H 1.08994 * 109.47274 * 298.49181 * 1 2 3 29 29 H 1.08998 * 109.47366 * 178.48211 * 1 2 3 30 30 H 1.09007 * 109.47007 * 119.99444 * 2 1 3 31 31 H 1.08995 * 109.48024 * 240.00055 * 2 1 3 32 32 H 1.09001 * 109.47129 * 215.40587 * 4 3 2 33 33 H 1.08998 * 109.47098 * 335.41333 * 4 3 2 34 34 H 0.96997 * 119.99640 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.46417 * 298.70438 * 17 15 13 36 36 H 1.08997 * 109.46643 * 58.66909 * 17 15 13 37 37 H 1.09000 * 109.47175 * 301.37019 * 18 17 15 38 38 H 1.09000 * 109.52620 * 181.30003 * 18 17 15 39 39 H 1.08999 * 109.58861 * 185.59119 * 19 18 17 40 40 H 1.09000 * 109.70045 * 65.23753 * 19 18 17 41 41 H 1.09007 * 109.47224 * 299.99811 * 24 21 20 42 42 H 1.09001 * 109.47886 * 59.99679 * 24 21 20 43 43 H 1.08998 * 109.46611 * 300.00194 * 25 24 21 44 44 H 1.09004 * 109.47185 * 59.99800 * 25 24 21 45 45 H 1.08993 * 109.47463 * 179.97438 * 25 24 21 46 46 H 1.08997 * 109.58352 * 186.60673 * 26 20 19 47 47 H 1.08997 * 109.58386 * 66.17949 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3030 2.0575 -1.2680 5 6 1.1044 2.8708 -1.6836 6 1 0.2192 2.8832 -1.0650 7 6 1.1381 3.6002 -2.8533 8 7 2.2166 3.5863 -3.6060 9 14 -0.3478 4.6078 -3.3690 10 1 -0.6467 5.6195 -2.3238 11 1 -0.0592 5.2933 -4.6542 12 1 -1.5192 3.7110 -3.5390 13 6 2.2057 2.0298 1.1666 14 8 2.0512 1.4444 2.2174 15 6 2.6071 3.4824 1.1651 16 1 1.9919 4.0291 0.4506 17 6 4.0804 3.6047 0.7693 18 6 4.4806 5.0815 0.7364 19 6 4.3024 5.6866 2.1324 20 7 2.9241 5.4448 2.5803 21 16 1.9706 6.6987 3.0909 22 8 2.4979 7.8354 2.4209 23 8 0.6440 6.2531 2.8445 24 6 2.2843 6.8088 4.8742 25 6 1.4510 7.9455 5.4694 26 6 2.4077 4.0693 2.5660 27 1 -0.3633 0.5373 -0.8762 28 1 -0.3633 0.4902 0.9031 29 1 -0.3634 -1.0273 -0.0272 30 1 1.8933 -0.5138 0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 3.1631 2.7155 -1.1438 33 1 2.5216 1.3145 -2.0350 34 1 2.2402 4.0991 -4.4290 35 1 4.6970 3.0780 1.4977 36 1 4.2291 3.1657 -0.2172 37 1 3.8481 5.6136 0.0258 38 1 5.5236 5.1696 0.4321 39 1 4.4907 6.7595 2.0924 40 1 4.9998 5.2189 2.8274 41 1 2.0086 5.8678 5.3504 42 1 3.3425 7.0063 5.0455 43 1 1.7271 8.8862 4.9932 44 1 0.3926 7.7484 5.2982 45 1 1.6391 8.0114 6.5410 46 1 1.3459 4.0751 2.8120 47 1 2.9506 3.4676 3.2949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343870445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:28 Heat of formation + Delta-G solvation = -135.528710 kcal Electronic energy + Delta-G solvation = -28874.388809 eV Core-core repulsion = 24990.239450 eV Total energy + Delta-G solvation = -3884.149359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25956 -38.83037 -38.27632 -37.03857 -36.94298 -34.71162 -34.04145 -33.79226 -32.38987 -31.36525 -28.96732 -25.88380 -25.69383 -24.80978 -24.64458 -23.50773 -21.66209 -19.88144 -19.74808 -18.86796 -18.58285 -17.85874 -17.52757 -17.19334 -16.97979 -16.30769 -16.04679 -15.78464 -15.43105 -15.10070 -15.05460 -14.68931 -14.62069 -14.29667 -14.04210 -14.01149 -13.79018 -13.52526 -13.43822 -13.41750 -13.23717 -13.07981 -13.04508 -12.97800 -12.74801 -12.65366 -12.43349 -12.37037 -12.16473 -11.92011 -11.82096 -11.70206 -11.66706 -11.51768 -11.30856 -10.66902 -10.46927 -9.88901 -9.43572 -8.21018 -6.31272 -0.79317 1.35590 1.38736 1.44576 1.57001 1.76363 2.32589 2.45623 2.89783 3.09086 3.09746 3.48873 3.71459 3.79559 3.89886 3.92899 4.08646 4.14949 4.25281 4.36054 4.39014 4.44572 4.53343 4.57808 4.60340 4.68059 4.80655 4.80800 4.82395 4.83585 4.93268 4.97441 5.02512 5.07231 5.07951 5.13449 5.26288 5.38127 5.43310 5.48381 5.60466 5.70071 5.89580 6.08869 6.56666 6.83553 7.30780 7.42372 8.83880 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011397 B = 0.004791 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.261419 B = 5843.447338 C = 6758.268479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.111 3.889 3 N -0.600 5.600 4 C 0.242 3.758 5 C -0.538 4.538 6 H 0.046 0.954 7 C 0.029 3.971 8 N -0.912 5.912 9 Si 0.935 3.065 10 H -0.283 1.283 11 H -0.277 1.277 12 H -0.270 1.270 13 C 0.523 3.477 14 O -0.589 6.589 15 C -0.120 4.120 16 H 0.080 0.920 17 C -0.104 4.104 18 C -0.128 4.128 19 C 0.115 3.885 20 N -1.001 6.001 21 S 2.589 3.411 22 O -0.988 6.988 23 O -1.001 7.001 24 C -0.597 4.597 25 C -0.161 4.161 26 C 0.147 3.853 27 H 0.045 0.955 28 H 0.035 0.965 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.022 0.978 34 H 0.267 0.733 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.040 0.960 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.153 0.847 42 H 0.165 0.835 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.110 0.890 46 H 0.076 0.924 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.264 3.893 16.366 17.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.011 4.011 3 N -0.329 5.329 4 C 0.121 3.879 5 C -0.576 4.576 6 H 0.064 0.936 7 C -0.171 4.171 8 N -0.552 5.552 9 Si 0.762 3.238 10 H -0.209 1.209 11 H -0.202 1.202 12 H -0.195 1.195 13 C 0.312 3.688 14 O -0.472 6.472 15 C -0.143 4.143 16 H 0.098 0.902 17 C -0.141 4.141 18 C -0.167 4.167 19 C -0.009 4.009 20 N -0.838 5.838 21 S 2.689 3.311 22 O -0.979 6.979 23 O -0.991 6.991 24 C -0.731 4.731 25 C -0.220 4.220 26 C 0.022 3.978 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.171 0.829 42 H 0.183 0.817 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.129 0.871 46 H 0.095 0.905 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.694 4.165 16.108 17.586 hybrid contribution -0.954 0.271 -0.669 1.197 sum 4.740 4.436 15.439 16.748 Atomic orbital electron populations 1.22020 0.96015 1.02399 1.00897 1.21439 0.94745 0.82441 1.02523 1.48281 1.63223 1.14160 1.07283 1.19407 0.96318 0.92338 0.79835 1.21600 1.00864 1.28563 1.06622 0.93615 1.25438 0.98030 0.97287 0.96388 1.69959 1.28591 1.42200 1.14410 0.85954 0.80957 0.79297 0.77625 1.20942 1.20160 1.19504 1.20596 0.76130 0.89092 0.82999 1.90543 1.55354 1.69612 1.31705 1.21564 1.00392 0.92413 0.99889 0.90156 1.21532 0.92212 0.98173 1.02212 1.21836 1.02839 0.94571 0.97437 1.21734 0.81067 1.02409 0.95739 1.57551 1.26045 1.19923 1.80272 1.05463 0.73033 0.72718 0.79909 1.93527 1.79892 1.51004 1.73443 1.93549 1.38657 1.81128 1.85812 1.30286 1.12542 1.09816 1.20495 1.21723 0.99354 0.95944 1.05016 1.21090 0.99834 0.81322 0.95604 0.93559 0.94544 0.89582 0.90447 0.89929 0.93267 0.95942 0.92400 0.89824 0.91608 0.94062 0.87872 0.88129 0.87495 0.82868 0.81724 0.90776 0.91522 0.87104 0.90530 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.46 10.23 71.98 0.74 -4.72 16 2 C 0.11 4.03 6.19 86.38 0.53 4.56 16 3 N -0.60 -25.29 2.47 -826.14 -2.04 -27.33 16 4 C 0.24 11.46 4.91 85.63 0.42 11.88 16 5 C -0.54 -28.55 8.11 25.60 0.21 -28.34 16 6 H 0.05 2.53 7.81 -2.91 -0.02 2.51 16 7 C 0.03 1.59 5.46 84.65 0.46 2.05 16 8 N -0.91 -50.47 13.29 21.45 0.28 -50.18 16 9 Si 0.94 44.15 29.54 68.60 2.03 46.17 16 10 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 C 0.52 21.63 6.86 87.66 0.60 22.23 16 14 O -0.59 -25.17 15.47 -3.04 -0.05 -25.22 16 15 C -0.12 -4.52 1.90 -11.46 -0.02 -4.54 16 16 H 0.08 3.68 6.77 -2.39 -0.02 3.66 16 17 C -0.10 -3.28 4.91 30.62 0.15 -3.13 16 18 C -0.13 -3.50 6.08 30.67 0.19 -3.32 16 19 C 0.11 2.49 6.43 86.36 0.56 3.05 16 20 N -1.00 -26.59 3.22 -513.06 -1.65 -28.25 16 21 S 2.59 69.77 5.45 -56.49 -0.31 69.46 16 22 O -0.99 -31.75 16.59 -127.65 -2.12 -33.86 16 23 O -1.00 -36.65 16.59 -127.65 -2.12 -38.77 16 24 C -0.60 -8.36 6.90 71.98 0.50 -7.86 16 25 C -0.16 -2.14 9.92 71.98 0.71 -1.43 16 26 C 0.15 4.61 5.22 86.36 0.45 5.07 16 27 H 0.05 1.82 8.02 -2.38 -0.02 1.80 16 28 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.08 2.67 7.42 -2.38 -0.02 2.65 16 31 H 0.08 2.75 7.83 -2.39 -0.02 2.73 16 32 H 0.05 2.37 4.32 -2.39 -0.01 2.36 16 33 H 0.02 1.12 7.81 -2.39 -0.02 1.10 16 34 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 35 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.07 2.38 5.27 -2.39 -0.01 2.37 16 37 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.10 2.02 6.86 -2.39 -0.02 2.00 16 40 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.15 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.16 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.08 2.64 6.86 -2.39 -0.02 2.62 16 47 H 0.10 2.64 7.76 -2.39 -0.02 2.62 16 Total: -1.00 -73.12 381.65 0.47 -72.65 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.95 Total: 19.84 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 5.49 Total: -4.51 kcal Atomic # 7 Polarization: -102.35 SS G_CDS: -3.41 Total: -105.76 kcal Atomic # 8 Polarization: -93.57 SS G_CDS: -4.28 Total: -97.85 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 69.77 SS G_CDS: -0.31 Total: 69.46 kcal Total: -73.12 0.47 -72.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343870445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.877 kcal (2) G-P(sol) polarization free energy of solvation -73.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds