Wall clock time and date at job start Tue Mar 31 2020 16:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46883 * 2 1 4 4 C 1.45530 * 115.54798 * 269.74543 * 3 2 1 5 5 C 1.52825 * 111.99822 * 213.12584 * 4 3 2 6 6 C 1.54120 * 109.17179 * 274.19941 * 5 4 3 7 7 N 1.45519 * 108.32331 * 59.64534 * 6 5 4 8 8 S 1.65600 * 120.81772 * 212.03986 * 7 6 5 9 9 O 1.42095 * 104.27642 * 26.05488 * 8 7 6 10 10 O 1.42098 * 104.27330 * 153.90863 * 8 7 6 11 11 C 1.81401 * 104.44917 * 269.97967 * 8 7 6 12 12 C 1.52997 * 109.47026 * 180.02562 * 11 8 7 13 13 C 1.53001 * 109.46872 * 299.99903 * 12 11 8 14 14 C 1.52997 * 109.47398 * 59.99714 * 12 11 8 15 15 C 1.50695 * 109.47157 * 180.02562 * 12 11 8 16 16 H 1.08005 * 120.00030 * 359.97438 * 15 12 11 17 17 C 1.37882 * 120.00222 * 179.97438 * 15 12 11 18 18 N 1.31518 * 119.99759 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 120.00256 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.47124 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.46867 * 119.99743 * 19 17 15 22 22 H 1.48496 * 109.47498 * 239.99927 * 19 17 15 23 23 C 1.46707 * 118.36565 * 32.02446 * 7 6 5 24 24 C 1.32812 * 115.55083 * 90.00209 * 3 2 1 25 25 O 1.21273 * 118.97872 * 349.59576 * 24 3 2 26 26 H 1.09001 * 109.46801 * 300.00349 * 1 2 3 27 27 H 1.09001 * 109.46998 * 59.99945 * 1 2 3 28 28 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47002 * 119.99497 * 2 1 3 30 30 H 1.08993 * 109.46955 * 239.99934 * 2 1 3 31 31 H 1.09000 * 109.01231 * 333.89145 * 4 3 2 32 32 H 1.09000 * 109.00997 * 92.68292 * 4 3 2 33 33 H 1.09000 * 109.51491 * 154.26137 * 5 4 3 34 34 H 1.08995 * 109.41432 * 34.07553 * 5 4 3 35 35 H 1.09001 * 109.69494 * 299.94387 * 6 5 4 36 36 H 1.09004 * 109.69835 * 179.35684 * 6 5 4 37 37 H 1.09003 * 109.47120 * 299.99979 * 11 8 7 38 38 H 1.08994 * 109.47297 * 59.99771 * 11 8 7 39 39 H 1.08996 * 109.47271 * 60.00162 * 13 12 11 40 40 H 1.09006 * 109.47023 * 180.02562 * 13 12 11 41 41 H 1.09002 * 109.47068 * 300.00122 * 13 12 11 42 42 H 1.09003 * 109.47043 * 60.00177 * 14 12 11 43 43 H 1.08999 * 109.47297 * 180.02562 * 14 12 11 44 44 H 1.08996 * 109.47196 * 300.00113 * 14 12 11 45 45 H 0.97001 * 119.99912 * 180.02562 * 18 17 15 46 46 H 1.08991 * 109.52875 * 150.82605 * 23 7 6 47 47 H 1.08993 * 109.58910 * 30.64138 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2330 1.9711 -1.3130 5 6 3.4023 2.9552 -1.3143 6 6 2.8963 4.3429 -0.8742 7 7 2.3339 4.2220 0.4625 8 16 1.0673 5.1762 0.9394 9 8 0.4019 5.5065 -0.2719 10 8 0.4170 4.4164 1.9488 11 6 1.8526 6.6462 1.6557 12 6 0.7731 7.6163 2.1399 13 6 -0.1059 8.0321 0.9586 14 6 -0.0898 6.9308 3.2011 15 6 1.4254 8.8378 2.7343 16 1 2.5023 8.9143 2.7642 17 6 0.6475 9.8577 3.2401 18 7 -0.6639 9.7646 3.2033 19 14 1.4561 11.3714 3.9776 20 1 2.9325 11.2316 3.8998 21 1 1.0320 12.5771 3.2215 22 1 1.0467 11.5088 5.3984 23 6 2.9165 3.2339 1.3770 24 6 2.2093 1.9213 1.1982 25 8 1.7994 1.3365 2.1784 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 2.4364 1.1761 -2.0304 32 1 1.3293 2.4991 -1.6171 33 1 3.8214 3.0213 -2.3183 34 1 4.1678 2.6091 -0.6199 35 1 2.1285 4.6901 -1.5656 36 1 3.7263 5.0494 -0.8611 37 1 2.4784 6.3500 2.4975 38 1 2.4676 7.1343 0.8998 39 1 -0.5778 7.1488 0.5282 40 1 -0.8748 8.7236 1.3034 41 1 0.5089 8.5205 0.2025 42 1 0.5363 6.6346 4.0427 43 1 -0.8592 7.6217 3.5457 44 1 -0.5617 6.0475 2.7707 45 1 -1.2112 10.4823 3.5587 46 1 2.7976 3.5747 2.4055 47 1 3.9762 3.1101 1.1544 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408457440.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:07 Heat of formation + Delta-G solvation = -118.014708 kcal Electronic energy + Delta-G solvation = -29160.392207 eV Core-core repulsion = 25277.002311 eV Total energy + Delta-G solvation = -3883.389895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.59553 -38.39662 -38.17727 -38.03719 -36.98983 -36.78222 -33.64785 -32.89062 -31.63401 -28.70952 -28.22793 -27.73367 -27.27175 -26.82833 -24.11698 -22.51706 -21.33654 -20.76318 -19.66329 -18.95658 -18.04254 -17.85671 -17.51186 -17.29424 -16.85161 -16.66200 -16.48545 -15.56675 -15.40185 -14.98511 -14.80639 -14.70249 -14.67245 -14.46453 -14.32264 -13.92974 -13.88917 -13.41572 -13.28551 -13.21515 -12.99528 -12.91660 -12.81567 -12.77145 -12.55955 -12.46861 -12.39255 -12.23172 -12.14037 -12.06679 -11.96291 -11.74297 -11.60359 -11.39392 -11.10530 -10.65165 -10.43855 -9.97938 -9.75685 -8.04240 -6.23325 -0.73897 1.37603 1.43189 1.46051 1.55844 1.84076 2.10228 2.43729 2.84373 3.13798 3.19462 3.52883 3.57912 3.91676 3.97122 4.00842 4.11959 4.14621 4.28065 4.32396 4.39578 4.45163 4.54310 4.56191 4.64385 4.73824 4.79584 4.82559 4.83286 4.92536 4.96777 4.99253 5.01054 5.04949 5.24495 5.26235 5.35117 5.45046 5.50467 5.57767 5.63130 5.93046 6.08427 6.31452 6.50833 6.81888 7.10290 7.45334 8.96019 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024605 B = 0.003564 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.690710 B = 7853.934511 C = 8068.577508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.092 3.908 3 N -0.600 5.600 4 C 0.105 3.895 5 C -0.135 4.135 6 C 0.090 3.910 7 N -0.994 5.994 8 S 2.600 3.400 9 O -0.981 6.981 10 O -0.990 6.990 11 C -0.581 4.581 12 C 0.068 3.932 13 C -0.158 4.158 14 C -0.159 4.159 15 C -0.516 4.516 16 H 0.066 0.934 17 C 0.016 3.984 18 N -0.909 5.909 19 Si 0.957 3.043 20 H -0.263 1.263 21 H -0.282 1.282 22 H -0.285 1.285 23 C 0.107 3.893 24 C 0.497 3.503 25 O -0.583 6.583 26 H 0.019 0.981 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.048 0.952 33 H 0.134 0.866 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.135 0.865 38 H 0.143 0.857 39 H 0.029 0.971 40 H 0.070 0.930 41 H 0.044 0.956 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.027 0.973 45 H 0.261 0.739 46 H 0.101 0.899 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.789 -16.035 -13.166 24.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.030 4.030 3 N -0.331 5.331 4 C -0.016 4.016 5 C -0.174 4.174 6 C -0.033 4.033 7 N -0.833 5.833 8 S 2.700 3.300 9 O -0.971 6.971 10 O -0.980 6.980 11 C -0.714 4.714 12 C 0.066 3.934 13 C -0.216 4.216 14 C -0.217 4.217 15 C -0.555 4.555 16 H 0.084 0.916 17 C -0.183 4.183 18 N -0.548 5.548 19 Si 0.783 3.217 20 H -0.187 1.187 21 H -0.208 1.208 22 H -0.212 1.212 23 C -0.021 4.021 24 C 0.283 3.717 25 O -0.463 6.463 26 H 0.039 0.961 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.067 0.933 33 H 0.152 0.848 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.153 0.847 38 H 0.161 0.839 39 H 0.047 0.953 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.089 0.911 44 H 0.046 0.954 45 H 0.071 0.929 46 H 0.119 0.881 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 11.519 -16.429 -12.766 23.782 hybrid contribution 0.024 1.400 1.035 1.741 sum 11.544 -15.029 -11.731 22.288 Atomic orbital electron populations 1.22092 0.96871 1.02834 1.00741 1.21785 0.94249 0.82810 1.04205 1.47394 1.64099 1.15545 1.06104 1.21699 0.99099 0.98814 0.81983 1.22472 0.97312 0.91784 1.05823 1.22086 1.00122 1.00234 0.80897 1.57454 1.53721 1.49885 1.22284 1.05250 0.74670 0.76191 0.73916 1.93483 1.72192 1.85318 1.46134 1.93554 1.73185 1.69613 1.61618 1.30461 1.11638 1.16383 1.12922 1.17945 0.90141 0.92794 0.92553 1.22185 1.01336 1.00744 0.97286 1.22204 1.01403 0.98275 0.99835 1.21320 0.93226 1.01752 1.39176 0.91563 1.25719 0.95365 1.01092 0.96167 1.69963 1.04751 1.33599 1.46512 0.85525 0.79112 0.79360 0.77751 1.18672 1.20829 1.21165 1.21617 1.01165 0.84297 0.95040 1.20820 0.79839 0.88188 0.82836 1.90716 1.51356 1.64408 1.39784 0.96127 0.92273 0.89642 0.91353 0.86365 0.86090 0.93335 0.84804 0.88967 0.89620 0.88092 0.84668 0.83867 0.95255 0.91152 0.93645 0.94306 0.91085 0.95423 0.92944 0.88101 0.82577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.71 10.17 71.98 0.73 -2.98 16 2 C 0.09 1.75 5.68 86.38 0.49 2.24 16 3 N -0.60 -12.91 2.77 -828.18 -2.29 -15.20 16 4 C 0.11 1.44 6.01 86.50 0.52 1.96 16 5 C -0.14 -1.21 5.65 30.92 0.17 -1.04 16 6 C 0.09 1.46 6.17 86.94 0.54 2.00 16 7 N -0.99 -24.83 2.80 -520.51 -1.46 -26.29 16 8 S 2.60 96.37 4.45 -56.49 -0.25 96.12 16 9 O -0.98 -39.95 14.25 -127.65 -1.82 -41.77 16 10 O -0.99 -44.80 14.65 -127.65 -1.87 -46.67 16 11 C -0.58 -21.82 5.12 71.98 0.37 -21.45 16 12 C 0.07 3.30 0.52 -52.93 -0.03 3.27 16 13 C -0.16 -7.86 7.77 71.98 0.56 -7.30 16 14 C -0.16 -8.22 7.78 71.98 0.56 -7.66 16 15 C -0.52 -26.78 8.01 25.60 0.21 -26.57 16 16 H 0.07 3.27 7.74 -2.91 -0.02 3.25 16 17 C 0.02 0.84 5.15 84.66 0.44 1.28 16 18 N -0.91 -50.84 9.35 21.45 0.20 -50.64 16 19 Si 0.96 42.04 29.54 68.60 2.03 44.06 16 20 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 23 C 0.11 2.50 5.12 85.43 0.44 2.94 16 24 C 0.50 14.34 7.06 87.79 0.62 14.96 16 25 O -0.58 -22.29 15.87 -3.01 -0.05 -22.34 16 26 H 0.02 0.62 7.87 -2.39 -0.02 0.61 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 1.52 7.20 -2.39 -0.02 1.50 16 30 H 0.12 1.18 7.53 -2.39 -0.02 1.16 16 31 H 0.12 0.73 7.49 -2.39 -0.02 0.71 16 32 H 0.05 0.88 7.84 -2.39 -0.02 0.86 16 33 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.09 0.65 6.31 -2.39 -0.02 0.64 16 35 H 0.09 1.63 6.91 -2.39 -0.02 1.62 16 36 H 0.10 1.07 8.14 -2.38 -0.02 1.06 16 37 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 38 H 0.14 4.57 8.14 -2.39 -0.02 4.55 16 39 H 0.03 1.40 5.46 -2.39 -0.01 1.39 16 40 H 0.07 3.85 6.07 -2.38 -0.01 3.84 16 41 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.07 3.98 6.07 -2.39 -0.01 3.97 16 44 H 0.03 1.38 5.46 -2.39 -0.01 1.37 16 45 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 46 H 0.10 2.64 7.80 -2.39 -0.02 2.62 16 47 H 0.16 2.01 6.64 -2.39 -0.02 1.99 16 Total: -1.00 -80.12 365.06 1.06 -79.06 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.96 Total: 22.02 kcal Atomic # 6 Polarization: -43.98 SS G_CDS: 5.61 Total: -38.36 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -3.55 Total: -92.13 kcal Atomic # 8 Polarization: -107.04 SS G_CDS: -3.74 Total: -110.77 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 96.37 SS G_CDS: -0.25 Total: 96.12 kcal Total: -80.12 1.06 -79.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408457440.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.955 kcal (2) G-P(sol) polarization free energy of solvation -80.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds