Wall clock time and date at job start Tue Mar 31 2020 16:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46507 * 109.46719 * 2 1 4 4 N 1.39799 * 125.33723 * 270.29800 * 3 2 1 5 5 C 1.30207 * 110.13100 * 180.13973 * 4 3 2 6 6 C 1.45978 * 107.58861 * 359.62075 * 5 4 3 7 7 C 1.39649 * 134.11688 * 180.26328 * 6 5 4 8 8 C 1.39573 * 117.94162 * 179.97438 * 7 6 5 9 9 C 1.47583 * 120.41088 * 180.02562 * 8 7 6 10 10 O 1.21612 * 120.00004 * 136.25965 * 9 8 7 11 11 N 1.34771 * 120.00234 * 316.26074 * 9 8 7 12 12 C 1.36907 * 119.99982 * 5.23556 * 11 9 8 13 13 H 1.08004 * 120.00025 * 321.46148 * 12 11 9 14 14 C 1.39021 * 120.00257 * 141.46550 * 12 11 9 15 15 N 1.31385 * 119.99952 * 339.10008 * 14 12 11 16 16 Si 1.86794 * 120.00359 * 159.09886 * 14 12 11 17 17 H 1.48501 * 109.47174 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47363 * 119.99900 * 16 14 12 19 19 H 1.48502 * 109.47230 * 239.99993 * 16 14 12 20 20 C 1.46507 * 120.00288 * 185.23926 * 11 9 8 21 21 C 1.53003 * 109.46849 * 84.46622 * 20 11 9 22 22 O 1.42898 * 109.47483 * 65.00123 * 21 20 11 23 23 C 1.42896 * 114.00207 * 179.97438 * 22 21 20 24 24 C 1.40234 * 119.17310 * 359.97438 * 8 7 6 25 25 C 1.50704 * 119.32072 * 180.02562 * 24 8 7 26 26 N 1.31182 * 121.36697 * 0.02562 * 24 8 7 27 27 C 1.32942 * 121.85089 * 359.97438 * 26 24 8 28 28 H 1.08994 * 109.47299 * 59.99865 * 1 2 3 29 29 H 1.08998 * 109.46715 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46606 * 300.00112 * 1 2 3 31 31 H 1.08993 * 109.47241 * 240.00149 * 2 1 3 32 32 H 1.08997 * 109.47239 * 119.99597 * 2 1 3 33 33 H 1.07991 * 126.20397 * 179.87995 * 5 4 3 34 34 H 1.07995 * 121.02770 * 359.97438 * 7 6 5 35 35 H 0.96996 * 120.00082 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.46974 * 204.46212 * 20 11 9 37 37 H 1.09000 * 109.46744 * 324.47009 * 20 11 9 38 38 H 1.09007 * 109.46662 * 185.00207 * 21 20 11 39 39 H 1.09005 * 109.47341 * 304.99797 * 21 20 11 40 40 H 1.08996 * 109.47038 * 179.97438 * 23 22 21 41 41 H 1.08999 * 109.47313 * 300.00508 * 23 22 21 42 42 H 1.09010 * 109.46728 * 60.00353 * 23 22 21 43 43 H 1.08992 * 109.46904 * 84.78856 * 25 24 8 44 44 H 1.09003 * 109.47110 * 204.79568 * 25 24 8 45 45 H 1.09001 * 109.46413 * 324.78890 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2822 2.1457 -1.1404 5 6 2.7054 3.3287 -0.7989 6 6 2.7262 3.3858 0.6596 7 6 3.0730 4.3685 1.5892 8 6 2.9624 4.0547 2.9447 9 6 3.3139 5.0525 3.9737 10 8 2.5957 5.2053 4.9431 11 7 4.4309 5.7945 3.8390 12 6 5.1821 5.7000 2.6984 13 1 5.3233 4.7408 2.2226 14 6 5.7633 6.8389 2.1524 15 7 5.2883 8.0267 2.4518 16 14 7.2193 6.6803 0.9931 17 1 7.5591 5.2453 0.8186 18 1 6.8695 7.2694 -0.3244 19 1 8.3865 7.4002 1.5630 20 6 4.8414 6.7022 4.9133 21 6 5.6456 5.9254 5.9578 22 8 6.8624 5.4587 5.3716 23 6 7.6923 4.7171 6.2679 24 6 2.5120 2.7798 3.3167 25 6 2.3908 2.4376 4.7793 26 7 2.1940 1.8788 2.4178 27 6 2.2813 2.1266 1.1146 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 2.9858 4.1249 -1.4725 34 1 3.4161 5.3412 1.2692 35 1 5.6935 8.8213 2.0706 36 1 5.4583 7.4997 4.4992 37 1 3.9570 7.1331 5.3825 38 1 5.8750 6.5790 6.7994 39 1 5.0609 5.0744 6.3074 40 1 8.5952 4.3983 5.7473 41 1 7.9641 5.3459 7.1158 42 1 7.1502 3.8411 6.6243 43 1 1.4268 2.7813 5.1541 44 1 2.4664 1.3577 4.9073 45 1 3.1916 2.9262 5.3343 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457201393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:40 Heat of formation + Delta-G solvation = 30.723480 kcal Electronic energy + Delta-G solvation = -29510.150243 eV Core-core repulsion = 25530.058920 eV Total energy + Delta-G solvation = -3980.091323 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.19182 -39.10171 -37.59268 -36.77922 -34.83897 -34.42040 -32.03147 -31.68092 -31.31183 -29.50942 -28.77054 -27.05666 -25.85018 -24.96481 -23.97954 -23.10016 -22.18368 -21.36439 -20.25653 -19.34377 -17.77012 -17.42512 -16.17595 -15.78618 -15.61646 -15.41721 -15.31447 -14.91483 -14.53998 -14.37067 -14.17023 -14.08204 -13.82303 -13.55299 -13.10729 -13.04362 -12.69486 -12.49626 -12.19780 -12.05271 -12.01746 -11.78106 -11.54354 -11.38704 -11.29145 -11.23342 -11.09502 -11.04554 -10.79039 -10.70579 -10.36865 -10.18556 -9.85314 -9.25012 -9.15837 -9.01729 -8.49734 -8.45508 -7.77923 -7.55744 -6.41975 -4.06389 1.21971 1.58794 2.38134 2.76156 3.12515 3.24649 3.29467 3.74250 4.09666 4.29731 4.37676 4.45479 4.56532 4.71883 4.94334 5.00278 5.03531 5.13066 5.22361 5.32365 5.45454 5.54362 5.62628 5.68642 5.75453 5.83525 5.90017 5.94571 6.00159 6.02089 6.06090 6.11136 6.17056 6.24821 6.34041 6.51986 6.62981 6.68807 6.71808 7.01551 7.18582 7.20826 7.42081 7.73566 7.75467 7.92928 8.30949 8.34276 9.03446 9.42407 9.84123 10.61065 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012391 B = 0.004548 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.138677 B = 6154.744254 C = 7391.956030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.143 3.857 3 N -0.399 5.399 4 N -0.256 5.256 5 C 0.095 3.905 6 C -0.248 4.248 7 C 0.065 3.935 8 C -0.185 4.185 9 C 0.519 3.481 10 O -0.599 6.599 11 N -0.418 5.418 12 C -0.328 4.328 13 H 0.088 0.912 14 C 0.052 3.948 15 N -0.858 5.858 16 Si 0.909 3.091 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.279 1.279 20 C 0.118 3.882 21 C 0.051 3.949 22 O -0.365 6.365 23 C 0.031 3.969 24 C 0.230 3.770 25 C -0.093 4.093 26 N -0.522 5.522 27 C 0.322 3.678 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.199 0.801 34 H 0.165 0.835 35 H 0.270 0.730 36 H 0.110 0.890 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.030 0.970 42 H 0.032 0.968 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.814 -8.851 -0.956 9.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.022 3.978 3 N -0.191 5.191 4 N -0.068 5.068 5 C -0.104 4.104 6 C -0.257 4.257 7 C 0.037 3.963 8 C -0.192 4.192 9 C 0.307 3.693 10 O -0.486 6.486 11 N -0.134 5.134 12 C -0.456 4.456 13 H 0.105 0.895 14 C -0.155 4.155 15 N -0.494 5.494 16 Si 0.735 3.265 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.204 1.204 20 C -0.005 4.005 21 C -0.027 4.027 22 O -0.283 6.283 23 C -0.066 4.066 24 C 0.082 3.918 25 C -0.150 4.150 26 N -0.239 5.239 27 C 0.084 3.916 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.216 0.784 34 H 0.182 0.818 35 H 0.080 0.920 36 H 0.128 0.872 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.677 -10.305 -1.500 10.752 hybrid contribution 1.361 1.200 0.006 1.815 sum -1.316 -9.104 -1.494 9.320 Atomic orbital electron populations 1.22182 0.95020 1.02507 1.02984 1.21496 0.94742 0.77804 1.03797 1.48104 1.58773 1.12169 1.00083 1.76588 1.17822 1.04623 1.07767 1.25041 0.97212 0.95025 0.93099 1.20514 1.13948 0.96805 0.94483 1.21720 0.85670 0.98635 0.90316 1.20514 1.07716 0.96347 0.94614 1.17859 0.81348 0.84114 0.85942 1.90623 1.51782 1.72128 1.34072 1.43180 1.19372 1.35805 1.15043 1.19324 1.29274 0.94383 1.02626 0.89466 1.25243 0.98070 0.94696 0.97454 1.69927 1.38050 0.98179 1.43256 0.86162 0.81966 0.78935 0.79398 1.19186 1.20834 1.20420 1.21424 0.97885 0.93761 0.87458 1.23057 0.85824 0.97540 0.96235 1.88130 1.31596 1.72024 1.36586 1.22647 0.95065 0.94879 0.94039 1.21167 0.88240 0.87376 0.95054 1.20705 1.04110 1.01392 0.88793 1.66435 1.23655 1.35506 0.98261 1.18991 0.95258 0.89422 0.87960 0.92066 0.90929 0.91949 0.89387 0.88978 0.78423 0.81764 0.91989 0.87169 0.90794 0.94111 0.94047 0.90441 0.95111 0.94946 0.89611 0.91479 0.90093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 10.24 37.16 0.38 -1.43 16 2 C 0.14 1.74 7.12 -4.04 -0.03 1.71 16 3 N -0.40 -6.47 3.63 -60.38 -0.22 -6.69 16 4 N -0.26 -4.11 12.39 31.87 0.39 -3.72 16 5 C 0.10 1.48 12.30 -15.14 -0.19 1.29 16 6 C -0.25 -4.58 6.36 -105.19 -0.67 -5.25 16 7 C 0.06 1.31 7.96 -38.56 -0.31 1.00 16 8 C -0.18 -3.95 5.23 -104.84 -0.55 -4.50 16 9 C 0.52 12.16 6.46 -12.45 -0.08 12.08 16 10 O -0.60 -14.75 15.03 5.27 0.08 -14.67 16 11 N -0.42 -9.94 2.47 -115.97 -0.29 -10.23 16 12 C -0.33 -7.88 6.40 -15.00 -0.10 -7.98 16 13 H 0.09 2.13 6.50 -52.48 -0.34 1.79 16 14 C 0.05 1.24 4.90 -17.45 -0.09 1.15 16 15 N -0.86 -21.35 11.59 55.50 0.64 -20.70 16 16 Si 0.91 19.18 29.60 -169.99 -5.03 14.15 16 17 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 18 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 C 0.12 2.66 5.32 -4.04 -0.02 2.64 16 21 C 0.05 1.00 6.24 37.16 0.23 1.23 16 22 O -0.37 -7.43 10.44 -35.23 -0.37 -7.80 16 23 C 0.03 0.47 11.01 101.05 1.11 1.59 16 24 C 0.23 4.52 6.82 -82.12 -0.56 3.96 16 25 C -0.09 -1.58 8.89 36.01 0.32 -1.26 16 26 N -0.52 -9.92 10.27 -8.25 -0.08 -10.00 16 27 C 0.32 5.99 7.96 -156.07 -1.24 4.75 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.20 2.31 8.06 -52.49 -0.42 1.89 16 34 H 0.16 3.40 6.52 -52.49 -0.34 3.06 16 35 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 36 H 0.11 2.66 5.66 -51.93 -0.29 2.37 16 37 H 0.07 1.67 7.52 -51.93 -0.39 1.28 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.03 0.46 8.14 -51.92 -0.42 0.04 16 43 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.08 1.47 6.89 -51.93 -0.36 1.11 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -29.63 377.10 -7.33 -36.95 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.36 Total: 6.04 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: -1.78 Total: 10.99 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.45 Total: -51.34 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.29 Total: -22.47 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.63 -7.33 -36.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457201393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.678 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds