Wall clock time and date at job start Tue Mar 31 2020 16:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46507 * 109.46719 * 2 1 4 4 N 1.39799 * 125.33723 * 270.29800 * 3 2 1 5 5 C 1.30207 * 110.13100 * 180.13973 * 4 3 2 6 6 C 1.45978 * 107.58861 * 359.62075 * 5 4 3 7 7 C 1.39649 * 134.11688 * 180.26328 * 6 5 4 8 8 C 1.39573 * 117.94162 * 179.97438 * 7 6 5 9 9 C 1.47583 * 120.41088 * 180.02562 * 8 7 6 10 10 O 1.21612 * 120.00004 * 136.25965 * 9 8 7 11 11 N 1.34771 * 120.00234 * 316.26074 * 9 8 7 12 12 C 1.36907 * 119.99982 * 5.23556 * 11 9 8 13 13 H 1.08004 * 120.00025 * 321.46148 * 12 11 9 14 14 C 1.39021 * 120.00257 * 141.46550 * 12 11 9 15 15 N 1.31385 * 119.99952 * 339.10008 * 14 12 11 16 16 Si 1.86794 * 120.00359 * 159.09886 * 14 12 11 17 17 H 1.48501 * 109.47174 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47363 * 119.99900 * 16 14 12 19 19 H 1.48502 * 109.47230 * 239.99993 * 16 14 12 20 20 C 1.46507 * 120.00288 * 185.23926 * 11 9 8 21 21 C 1.53003 * 109.46849 * 84.46622 * 20 11 9 22 22 O 1.42898 * 109.47483 * 65.00123 * 21 20 11 23 23 C 1.42896 * 114.00207 * 179.97438 * 22 21 20 24 24 C 1.40234 * 119.17310 * 359.97438 * 8 7 6 25 25 C 1.50704 * 119.32072 * 180.02562 * 24 8 7 26 26 N 1.31182 * 121.36697 * 0.02562 * 24 8 7 27 27 C 1.32942 * 121.85089 * 359.97438 * 26 24 8 28 28 H 1.08994 * 109.47299 * 59.99865 * 1 2 3 29 29 H 1.08998 * 109.46715 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46606 * 300.00112 * 1 2 3 31 31 H 1.08993 * 109.47241 * 240.00149 * 2 1 3 32 32 H 1.08997 * 109.47239 * 119.99597 * 2 1 3 33 33 H 1.07991 * 126.20397 * 179.87995 * 5 4 3 34 34 H 1.07995 * 121.02770 * 359.97438 * 7 6 5 35 35 H 0.96996 * 120.00082 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.46974 * 204.46212 * 20 11 9 37 37 H 1.09000 * 109.46744 * 324.47009 * 20 11 9 38 38 H 1.09007 * 109.46662 * 185.00207 * 21 20 11 39 39 H 1.09005 * 109.47341 * 304.99797 * 21 20 11 40 40 H 1.08996 * 109.47038 * 179.97438 * 23 22 21 41 41 H 1.08999 * 109.47313 * 300.00508 * 23 22 21 42 42 H 1.09010 * 109.46728 * 60.00353 * 23 22 21 43 43 H 1.08992 * 109.46904 * 84.78856 * 25 24 8 44 44 H 1.09003 * 109.47110 * 204.79568 * 25 24 8 45 45 H 1.09001 * 109.46413 * 324.78890 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2822 2.1457 -1.1404 5 6 2.7054 3.3287 -0.7989 6 6 2.7262 3.3858 0.6596 7 6 3.0730 4.3685 1.5892 8 6 2.9624 4.0547 2.9447 9 6 3.3139 5.0525 3.9737 10 8 2.5957 5.2053 4.9431 11 7 4.4309 5.7945 3.8390 12 6 5.1821 5.7000 2.6984 13 1 5.3233 4.7408 2.2226 14 6 5.7633 6.8389 2.1524 15 7 5.2883 8.0267 2.4518 16 14 7.2193 6.6803 0.9931 17 1 7.5591 5.2453 0.8186 18 1 6.8695 7.2694 -0.3244 19 1 8.3865 7.4002 1.5630 20 6 4.8414 6.7022 4.9133 21 6 5.6456 5.9254 5.9578 22 8 6.8624 5.4587 5.3716 23 6 7.6923 4.7171 6.2679 24 6 2.5120 2.7798 3.3167 25 6 2.3908 2.4376 4.7793 26 7 2.1940 1.8788 2.4178 27 6 2.2813 2.1266 1.1146 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 2.9858 4.1249 -1.4725 34 1 3.4161 5.3412 1.2692 35 1 5.6935 8.8213 2.0706 36 1 5.4583 7.4997 4.4992 37 1 3.9570 7.1331 5.3825 38 1 5.8750 6.5790 6.7994 39 1 5.0609 5.0744 6.3074 40 1 8.5952 4.3983 5.7473 41 1 7.9641 5.3459 7.1158 42 1 7.1502 3.8411 6.6243 43 1 1.4268 2.7813 5.1541 44 1 2.4664 1.3577 4.9073 45 1 3.1916 2.9262 5.3343 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457201393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:39 Heat of formation + Delta-G solvation = 13.601870 kcal Electronic energy + Delta-G solvation = -29510.892692 eV Core-core repulsion = 25530.058920 eV Total energy + Delta-G solvation = -3980.833772 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.57867 -40.76814 -39.08179 -38.31823 -36.63213 -35.57950 -33.57638 -33.40534 -32.74559 -30.96510 -30.10104 -28.47446 -27.26383 -26.68696 -25.31069 -24.39215 -23.71446 -22.87327 -21.51063 -21.10423 -19.43946 -18.79059 -17.81893 -17.32570 -17.09156 -16.94048 -16.72246 -16.37104 -16.10649 -15.99894 -15.63052 -15.33800 -15.14946 -14.92216 -14.62551 -14.47811 -14.20169 -13.71614 -13.60606 -13.57773 -13.33978 -13.08495 -12.98771 -12.87693 -12.78021 -12.71009 -12.52449 -12.46596 -12.35105 -12.06352 -11.98356 -11.79264 -11.33056 -10.99777 -10.76134 -10.49968 -10.23012 -9.85729 -9.40604 -9.20825 -8.25449 -5.94363 -0.21827 0.04675 1.15145 1.42974 1.45018 1.52433 1.62071 2.04048 2.35351 2.71400 2.89916 3.02685 3.09739 3.24533 3.34454 3.69747 3.82273 3.91525 4.11715 4.13049 4.28613 4.32393 4.35652 4.42411 4.51023 4.55788 4.58912 4.63684 4.69253 4.72624 4.75882 4.81515 4.82268 4.86201 4.93677 5.08788 5.16377 5.22835 5.31911 5.37596 5.51387 5.57610 5.87593 6.01669 6.41559 6.43448 6.46364 6.87074 7.17943 7.59955 8.01472 8.78496 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012391 B = 0.004548 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.138677 B = 6154.744254 C = 7391.956030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.132 3.868 3 N -0.397 5.397 4 N -0.257 5.257 5 C 0.103 3.897 6 C -0.262 4.262 7 C 0.066 3.934 8 C -0.213 4.213 9 C 0.514 3.486 10 O -0.620 6.620 11 N -0.427 5.427 12 C -0.329 4.329 13 H 0.081 0.919 14 C 0.021 3.979 15 N -0.885 5.885 16 Si 0.965 3.035 17 H -0.269 1.269 18 H -0.273 1.273 19 H -0.283 1.283 20 C 0.117 3.883 21 C 0.062 3.938 22 O -0.398 6.398 23 C 0.025 3.975 24 C 0.224 3.776 25 C -0.085 4.085 26 N -0.520 5.520 27 C 0.310 3.690 28 H 0.056 0.944 29 H 0.104 0.896 30 H 0.041 0.959 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.235 0.765 34 H 0.153 0.847 35 H 0.272 0.728 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.035 0.965 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.039 0.961 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.339 -10.542 -2.080 10.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.012 3.988 3 N -0.188 5.188 4 N -0.068 5.068 5 C -0.096 4.096 6 C -0.271 4.271 7 C 0.038 3.962 8 C -0.220 4.220 9 C 0.304 3.696 10 O -0.508 6.508 11 N -0.143 5.143 12 C -0.457 4.457 13 H 0.098 0.902 14 C -0.183 4.183 15 N -0.522 5.522 16 Si 0.790 3.210 17 H -0.193 1.193 18 H -0.198 1.198 19 H -0.208 1.208 20 C -0.006 4.006 21 C -0.016 4.016 22 O -0.317 6.317 23 C -0.071 4.071 24 C 0.075 3.925 25 C -0.142 4.142 26 N -0.237 5.237 27 C 0.070 3.930 28 H 0.075 0.925 29 H 0.123 0.877 30 H 0.060 0.940 31 H 0.129 0.871 32 H 0.115 0.885 33 H 0.251 0.749 34 H 0.170 0.830 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.058 0.942 43 H 0.106 0.894 44 H 0.110 0.890 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.207 -12.025 -2.644 12.508 hybrid contribution 1.174 1.652 0.319 2.052 sum -1.033 -10.372 -2.326 10.680 Atomic orbital electron populations 1.22121 0.93796 1.04212 1.01653 1.21893 0.95726 0.75968 1.05179 1.48537 1.57913 1.13179 0.99217 1.76597 1.17752 1.04761 1.07697 1.25598 0.96274 0.95677 0.92036 1.20732 1.14037 0.96457 0.95908 1.21563 0.85770 0.98552 0.90354 1.20473 1.10002 0.96906 0.94634 1.18199 0.80981 0.84310 0.86156 1.90582 1.52335 1.72858 1.35040 1.43351 1.19549 1.36000 1.15398 1.19310 1.29312 0.94186 1.02885 0.90160 1.25818 0.99578 0.94257 0.98632 1.70000 1.39062 0.98729 1.44453 0.85317 0.79065 0.78533 0.78129 1.19331 1.19839 1.20845 1.21380 0.97601 0.93784 0.87869 1.22859 0.85605 0.97405 0.95682 1.88060 1.31972 1.72892 1.38762 1.22875 0.94811 0.95100 0.94311 1.21445 0.87866 0.86907 0.96249 1.20662 1.03573 1.02810 0.87139 1.66502 1.23642 1.35016 0.98497 1.19299 0.95162 0.90118 0.88386 0.92531 0.87727 0.94003 0.87081 0.88533 0.74903 0.82951 0.91815 0.88921 0.91851 0.91339 0.94648 0.89080 0.92905 0.94186 0.89422 0.88976 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 10.24 71.98 0.74 -2.31 16 2 C 0.13 2.89 7.12 86.38 0.62 3.50 16 3 N -0.40 -12.11 3.63 -344.93 -1.25 -13.36 16 4 N -0.26 -7.65 12.39 -53.08 -0.66 -8.30 16 5 C 0.10 2.99 12.30 86.94 1.07 4.06 16 6 C -0.26 -9.51 6.36 -20.24 -0.13 -9.64 16 7 C 0.07 2.70 7.96 22.93 0.18 2.88 16 8 C -0.21 -9.32 5.23 -20.00 -0.10 -9.42 16 9 C 0.51 24.89 6.46 86.71 0.56 25.45 16 10 O -0.62 -31.51 15.03 -4.07 -0.06 -31.58 16 11 N -0.43 -20.92 2.47 -639.07 -1.58 -22.50 16 12 C -0.33 -16.11 6.40 84.09 0.54 -15.57 16 13 H 0.08 4.00 6.50 -2.91 -0.02 3.98 16 14 C 0.02 1.01 4.90 84.95 0.42 1.43 16 15 N -0.89 -44.81 11.59 21.68 0.25 -44.56 16 16 Si 0.96 39.24 29.60 68.60 2.03 41.27 16 17 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 18 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 19 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 20 C 0.12 5.43 5.32 86.38 0.46 5.89 16 21 C 0.06 2.44 6.24 71.98 0.45 2.89 16 22 O -0.40 -16.03 10.44 -148.98 -1.56 -17.59 16 23 C 0.03 0.73 11.01 113.37 1.25 1.98 16 24 C 0.22 8.87 6.82 43.14 0.29 9.16 16 25 C -0.08 -2.89 8.89 71.24 0.63 -2.25 16 26 N -0.52 -19.44 10.27 -180.02 -1.85 -21.29 16 27 C 0.31 11.22 7.96 134.17 1.07 12.29 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 29 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.23 4.79 8.06 -2.92 -0.02 4.77 16 34 H 0.15 6.50 6.52 -2.91 -0.02 6.48 16 35 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 36 H 0.09 4.62 5.66 -2.39 -0.01 4.60 16 37 H 0.06 2.98 7.52 -2.39 -0.02 2.97 16 38 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 39 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 44 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 45 H 0.07 2.46 6.89 -2.39 -0.02 2.44 16 Total: -1.00 -64.34 377.10 4.37 -59.97 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 1.01 Total: 27.60 kcal Atomic # 6 Polarization: 22.30 SS G_CDS: 8.04 Total: 30.33 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -5.09 Total: -110.01 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -1.62 Total: -49.16 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -64.34 4.37 -59.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457201393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.571 kcal (2) G-P(sol) polarization free energy of solvation -64.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds