Wall clock time and date at job start Tue Mar 31 2020 18:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.47095 * 2 1 4 4 C 1.34722 * 116.99827 * 180.02562 * 3 2 1 5 5 O 1.21487 * 120.00026 * 359.97438 * 4 3 2 6 6 C 1.47627 * 120.00170 * 179.97438 * 4 3 2 7 7 C 1.40368 * 126.16787 * 179.97438 * 6 4 3 8 8 C 1.38370 * 105.19020 * 179.72655 * 7 6 4 9 9 C 1.41509 * 133.71401 * 180.26718 * 8 7 6 10 10 N 1.38378 * 120.28858 * 359.95550 * 9 8 7 11 11 C 1.46505 * 119.99477 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.46917 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47229 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47387 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99915 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99820 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00395 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99590 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47264 * 59.99613 * 18 16 14 20 20 H 1.48504 * 109.46790 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46946 * 299.99480 * 18 16 14 22 22 N 1.31947 * 119.41275 * 179.97438 * 9 8 7 23 23 C 1.33696 * 120.97352 * 359.97199 * 22 9 8 24 24 C 1.50696 * 119.16723 * 179.97438 * 23 22 9 25 25 C 1.34625 * 121.66561 * 0.02562 * 23 22 9 26 26 N 1.37374 * 106.86429 * 0.24112 * 8 7 6 27 27 N 1.28502 * 109.33646 * 359.97438 * 26 8 7 28 28 H 1.08999 * 109.47344 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47092 * 300.00016 * 1 2 3 30 30 H 1.09001 * 109.47165 * 60.00403 * 1 2 3 31 31 H 1.08996 * 109.47241 * 239.99706 * 2 1 3 32 32 H 1.09003 * 109.46782 * 119.99969 * 2 1 3 33 33 H 1.08002 * 127.40667 * 359.97438 * 7 6 4 34 34 H 0.97001 * 120.00702 * 0.02562 * 10 9 8 35 35 H 1.09004 * 109.47131 * 299.99522 * 11 10 9 36 36 H 1.08997 * 109.47615 * 60.00169 * 11 10 9 37 37 H 1.09008 * 109.47160 * 299.99719 * 12 11 10 38 38 H 1.09001 * 109.47444 * 59.99512 * 12 11 10 39 39 H 1.08996 * 109.47250 * 299.99809 * 13 12 11 40 40 H 1.09001 * 109.47178 * 59.99506 * 13 12 11 41 41 H 0.97002 * 119.99934 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.47407 * 270.02459 * 24 23 22 43 43 H 1.09003 * 109.47375 * 30.02509 * 24 23 22 44 44 H 1.08998 * 109.47244 * 150.02222 * 24 23 22 45 45 H 1.07997 * 119.93783 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3496 1.5454 -0.0005 5 8 4.0896 0.5820 -0.0005 6 6 3.9140 2.9096 -0.0011 7 6 5.2777 3.2419 -0.0012 8 6 5.3139 4.6251 -0.0082 9 6 6.3619 5.5759 -0.0166 10 7 7.6817 5.1599 -0.0182 11 6 8.7616 6.1499 -0.0264 12 6 10.1123 5.4311 -0.0271 13 6 11.2402 6.4649 -0.0363 14 6 12.5706 5.7569 -0.0364 15 1 12.6079 4.6776 -0.0301 16 6 13.7400 6.4872 -0.0434 17 7 13.6946 7.8015 -0.0506 18 14 15.3891 5.6096 -0.0443 19 1 15.4935 4.7533 -1.2529 20 1 16.4838 6.6130 -0.0531 21 1 15.5009 4.7649 1.1720 22 7 6.0695 6.8626 -0.0225 23 6 4.7992 7.2795 -0.0213 24 6 4.5117 8.7587 -0.0276 25 6 3.7704 6.4112 -0.0135 26 7 4.0101 5.0578 -0.0065 27 7 3.2243 4.0411 0.0005 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 6.1183 2.5637 -0.0005 34 1 7.8918 4.2130 -0.0140 35 1 8.6798 6.7696 -0.9194 36 1 8.6849 6.7787 0.8606 37 1 10.1945 4.8111 0.8657 38 1 10.1889 4.8025 -0.9143 39 1 11.1579 7.0845 -0.9292 40 1 11.1637 7.0938 0.8507 41 1 14.5174 8.3152 -0.0559 42 1 4.4454 9.1204 0.9985 43 1 5.3145 9.2827 -0.5464 44 1 3.5672 8.9431 -0.5395 45 1 2.7549 6.7787 -0.0122 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881918063.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:08 Heat of formation + Delta-G solvation = 18.993597 kcal Electronic energy + Delta-G solvation = -26927.431013 eV Core-core repulsion = 22946.831044 eV Total energy + Delta-G solvation = -3980.599969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.52835 -40.55226 -39.11832 -37.00255 -36.76768 -34.22566 -33.08464 -32.46174 -31.92249 -30.73191 -30.54201 -27.73264 -26.81274 -24.86415 -23.92801 -23.04237 -22.68349 -22.30808 -20.90308 -20.50288 -18.78185 -18.40382 -17.21023 -17.11608 -16.70780 -16.53439 -16.39759 -15.87842 -15.27642 -15.01438 -14.58499 -14.46076 -14.27627 -14.04575 -13.97062 -13.63978 -13.15972 -13.06589 -12.98608 -12.53288 -12.34452 -12.33860 -11.98243 -11.88832 -11.75453 -11.30069 -11.12056 -11.07612 -10.88471 -10.87341 -10.82060 -10.64091 -9.95230 -9.89386 -9.77816 -9.52505 -9.19387 -9.19358 -8.40788 -7.59911 -6.05751 -4.08949 0.43472 0.87224 1.41361 1.80629 2.36685 2.83897 2.95253 3.30137 3.33932 3.34988 3.37153 3.73746 3.98917 4.16125 4.41281 4.52540 4.56094 4.61248 4.84703 4.89104 4.91948 5.04845 5.15942 5.30252 5.31485 5.39014 5.39744 5.45330 5.54209 5.57053 5.59355 5.67082 5.83369 5.95483 6.03752 6.05650 6.26828 6.49853 6.52233 6.85396 6.96349 7.14583 7.30719 7.57629 7.58716 7.69344 7.92147 7.95048 8.33150 8.97161 9.55550 11.05313 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013564 B = 0.002160 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.762187 B =12962.828001 C =14984.910641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.342 6.342 4 C 0.561 3.439 5 O -0.495 6.495 6 C 0.003 3.997 7 C -0.132 4.132 8 C -0.055 4.055 9 C 0.484 3.516 10 N -0.681 5.681 11 C 0.124 3.876 12 C -0.125 4.125 13 C 0.026 3.974 14 C -0.525 4.525 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 N -0.553 5.553 23 C 0.166 3.834 24 C -0.095 4.095 25 C -0.086 4.086 26 N -0.137 5.137 27 N -0.250 5.250 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.176 0.824 34 H 0.413 0.587 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.262 0.738 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.725 -7.168 0.096 27.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.258 6.258 4 C 0.403 3.597 5 O -0.381 6.381 6 C -0.143 4.143 7 C -0.163 4.163 8 C -0.178 4.178 9 C 0.225 3.775 10 N -0.309 5.309 11 C 0.002 3.998 12 C -0.163 4.163 13 C -0.011 4.011 14 C -0.563 4.563 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 N -0.280 5.280 23 C 0.042 3.958 24 C -0.153 4.153 25 C -0.212 4.212 26 N 0.084 4.916 27 N -0.092 5.092 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.194 0.806 34 H 0.250 0.750 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.072 0.928 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -26.870 -6.177 0.092 27.571 hybrid contribution 1.159 -1.863 0.020 2.194 sum -25.711 -8.040 0.113 26.939 Atomic orbital electron populations 1.21808 0.92360 1.03019 1.03754 1.23123 0.95580 0.79667 1.02898 1.86640 1.22928 1.32494 1.83709 1.19373 0.80840 0.86747 0.72698 1.90886 1.60653 1.40639 1.45880 1.20455 0.91471 0.90215 1.12135 1.21622 0.96480 0.91759 1.06474 1.20136 0.87340 0.94479 1.15892 1.17980 0.84957 0.87235 0.87304 1.45005 1.01287 1.10766 1.73863 1.21822 0.84780 0.90572 1.02654 1.21951 0.92872 1.00324 1.01133 1.19004 0.91021 0.93388 0.97715 1.21155 0.90930 0.92976 1.51220 0.92679 1.25016 0.99312 0.94847 0.95192 1.69947 1.27930 1.04949 1.50370 0.86642 0.83330 0.79305 0.78630 1.20235 1.21250 1.20230 1.68046 1.20201 1.12590 1.27202 1.20336 0.86119 0.96979 0.92384 1.20657 1.03123 0.87765 1.03753 1.21700 1.02613 0.76764 1.20097 1.42649 1.03652 1.05791 1.39480 1.73952 1.20434 0.92290 1.22557 0.90062 0.91350 0.91345 0.90906 0.90907 0.80641 0.74977 0.91058 0.91051 0.92555 0.92554 0.96189 0.96196 0.92849 0.89724 0.89408 0.90279 0.80886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.29 37.16 0.38 -0.46 16 2 C 0.06 0.49 6.19 37.16 0.23 0.72 16 3 O -0.34 -3.94 10.23 -40.55 -0.41 -4.35 16 4 C 0.56 7.32 7.97 34.56 0.28 7.59 16 5 O -0.49 -7.06 16.69 -19.26 -0.32 -7.38 16 6 C 0.00 0.05 7.11 -82.94 -0.59 -0.54 16 7 C -0.13 -1.66 10.57 -38.73 -0.41 -2.07 16 8 C -0.06 -0.74 6.76 -84.09 -0.57 -1.31 16 9 C 0.48 6.67 7.55 -155.10 -1.17 5.50 16 10 N -0.68 -9.03 5.69 -60.02 -0.34 -9.37 16 11 C 0.12 1.94 5.71 -4.04 -0.02 1.92 16 12 C -0.12 -2.28 5.27 -26.73 -0.14 -2.43 16 13 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 14 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 18 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 N -0.55 -7.71 9.60 -8.74 -0.08 -7.79 16 23 C 0.17 1.86 6.70 -83.06 -0.56 1.31 16 24 C -0.10 -0.71 10.13 36.00 0.36 -0.35 16 25 C -0.09 -0.95 10.74 -16.32 -0.18 -1.13 16 26 N -0.14 -1.82 3.62 -10.46 -0.04 -1.86 16 27 N -0.25 -3.49 12.14 33.28 0.40 -3.08 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.18 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.41 4.64 8.24 -40.82 -0.34 4.30 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.40 8.05 -51.93 -0.42 -0.02 16 45 H 0.17 1.37 8.05 -52.49 -0.42 0.95 16 LS Contribution 390.92 15.07 5.89 5.89 Total: -1.00 -32.84 390.92 -8.76 -41.59 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -6.64 Total: -0.58 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -2.93 Total: -3.81 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.68 Total: -47.52 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -0.74 Total: -11.74 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.84 -8.76 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881918063.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.586 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds