Wall clock time and date at job start Tue Mar 31 2020 18:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.47095 * 2 1 4 4 C 1.34722 * 116.99827 * 180.02562 * 3 2 1 5 5 O 1.21487 * 120.00026 * 359.97438 * 4 3 2 6 6 C 1.47627 * 120.00170 * 179.97438 * 4 3 2 7 7 C 1.40368 * 126.16787 * 179.97438 * 6 4 3 8 8 C 1.38370 * 105.19020 * 179.72655 * 7 6 4 9 9 C 1.41509 * 133.71401 * 180.26718 * 8 7 6 10 10 N 1.38378 * 120.28858 * 359.95550 * 9 8 7 11 11 C 1.46505 * 119.99477 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.46917 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47229 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47387 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99915 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99820 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00395 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99590 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47264 * 59.99613 * 18 16 14 20 20 H 1.48504 * 109.46790 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46946 * 299.99480 * 18 16 14 22 22 N 1.31947 * 119.41275 * 179.97438 * 9 8 7 23 23 C 1.33696 * 120.97352 * 359.97199 * 22 9 8 24 24 C 1.50696 * 119.16723 * 179.97438 * 23 22 9 25 25 C 1.34625 * 121.66561 * 0.02562 * 23 22 9 26 26 N 1.37374 * 106.86429 * 0.24112 * 8 7 6 27 27 N 1.28502 * 109.33646 * 359.97438 * 26 8 7 28 28 H 1.08999 * 109.47344 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47092 * 300.00016 * 1 2 3 30 30 H 1.09001 * 109.47165 * 60.00403 * 1 2 3 31 31 H 1.08996 * 109.47241 * 239.99706 * 2 1 3 32 32 H 1.09003 * 109.46782 * 119.99969 * 2 1 3 33 33 H 1.08002 * 127.40667 * 359.97438 * 7 6 4 34 34 H 0.97001 * 120.00702 * 0.02562 * 10 9 8 35 35 H 1.09004 * 109.47131 * 299.99522 * 11 10 9 36 36 H 1.08997 * 109.47615 * 60.00169 * 11 10 9 37 37 H 1.09008 * 109.47160 * 299.99719 * 12 11 10 38 38 H 1.09001 * 109.47444 * 59.99512 * 12 11 10 39 39 H 1.08996 * 109.47250 * 299.99809 * 13 12 11 40 40 H 1.09001 * 109.47178 * 59.99506 * 13 12 11 41 41 H 0.97002 * 119.99934 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.47407 * 270.02459 * 24 23 22 43 43 H 1.09003 * 109.47375 * 30.02509 * 24 23 22 44 44 H 1.08998 * 109.47244 * 150.02222 * 24 23 22 45 45 H 1.07997 * 119.93783 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3496 1.5454 -0.0005 5 8 4.0896 0.5820 -0.0005 6 6 3.9140 2.9096 -0.0011 7 6 5.2777 3.2419 -0.0012 8 6 5.3139 4.6251 -0.0082 9 6 6.3619 5.5759 -0.0166 10 7 7.6817 5.1599 -0.0182 11 6 8.7616 6.1499 -0.0264 12 6 10.1123 5.4311 -0.0271 13 6 11.2402 6.4649 -0.0363 14 6 12.5706 5.7569 -0.0364 15 1 12.6079 4.6776 -0.0301 16 6 13.7400 6.4872 -0.0434 17 7 13.6946 7.8015 -0.0506 18 14 15.3891 5.6096 -0.0443 19 1 15.4935 4.7533 -1.2529 20 1 16.4838 6.6130 -0.0531 21 1 15.5009 4.7649 1.1720 22 7 6.0695 6.8626 -0.0225 23 6 4.7992 7.2795 -0.0213 24 6 4.5117 8.7587 -0.0276 25 6 3.7704 6.4112 -0.0135 26 7 4.0101 5.0578 -0.0065 27 7 3.2243 4.0411 0.0005 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 6.1183 2.5637 -0.0005 34 1 7.8918 4.2130 -0.0140 35 1 8.6798 6.7696 -0.9194 36 1 8.6849 6.7787 0.8606 37 1 10.1945 4.8111 0.8657 38 1 10.1889 4.8025 -0.9143 39 1 11.1579 7.0845 -0.9292 40 1 11.1637 7.0938 0.8507 41 1 14.5174 8.3152 -0.0559 42 1 4.4454 9.1204 0.9985 43 1 5.3145 9.2827 -0.5464 44 1 3.5672 8.9431 -0.5395 45 1 2.7549 6.7787 -0.0122 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881918063.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:07 Heat of formation + Delta-G solvation = 0.093539 kcal Electronic energy + Delta-G solvation = -26928.250581 eV Core-core repulsion = 22946.831044 eV Total energy + Delta-G solvation = -3981.419537 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.50756 -41.48708 -40.10718 -38.05260 -37.76181 -35.85152 -34.34117 -33.73138 -32.59222 -32.09509 -31.51697 -28.71321 -28.33616 -25.85142 -25.26084 -23.94685 -23.76785 -23.27544 -22.25156 -21.72429 -19.82507 -19.34846 -18.45343 -18.19432 -18.05333 -17.66240 -17.42489 -16.79905 -16.52161 -16.34855 -16.30697 -15.50032 -15.27471 -14.85971 -14.84546 -14.46124 -14.26983 -14.13449 -13.96396 -13.67669 -13.64644 -13.14184 -13.09574 -13.01714 -12.68472 -12.55996 -12.54781 -12.41837 -12.29676 -12.06864 -12.05247 -11.61556 -11.58189 -11.48683 -11.20009 -10.84442 -10.77798 -10.52786 -10.27128 -8.57425 -8.18163 -6.28692 -0.53215 -0.12750 0.45711 0.88817 1.42504 1.44606 1.48589 1.52478 1.84658 1.92478 2.38070 2.42915 2.80140 3.04334 3.15717 3.25566 3.64613 3.91120 3.99844 4.03806 4.12367 4.15028 4.25120 4.26042 4.26788 4.34226 4.58728 4.66463 4.76407 4.83907 4.85531 4.91263 4.95830 4.98519 5.04762 5.08795 5.18445 5.25624 5.31407 5.39617 5.52729 5.74131 5.80094 5.86539 6.14970 6.25301 6.35675 6.61665 6.88137 6.97899 7.40458 8.93188 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013564 B = 0.002160 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.762187 B =12962.828001 C =14984.910641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.349 6.349 4 C 0.564 3.436 5 O -0.513 6.513 6 C -0.010 4.010 7 C -0.130 4.130 8 C -0.065 4.065 9 C 0.475 3.525 10 N -0.678 5.678 11 C 0.145 3.855 12 C -0.108 4.108 13 C 0.027 3.973 14 C -0.543 4.543 15 H 0.063 0.937 16 C 0.000 4.000 17 N -0.931 5.931 18 Si 0.962 3.038 19 H -0.268 1.268 20 H -0.285 1.285 21 H -0.268 1.268 22 N -0.574 5.574 23 C 0.155 3.845 24 C -0.092 4.092 25 C -0.084 4.084 26 N -0.142 5.142 27 N -0.263 5.263 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.194 0.806 34 H 0.423 0.577 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.065 0.935 39 H -0.004 1.004 40 H -0.004 1.004 41 H 0.263 0.737 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.109 0.891 45 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.951 -8.183 0.110 29.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.264 6.264 4 C 0.407 3.593 5 O -0.400 6.400 6 C -0.156 4.156 7 C -0.161 4.161 8 C -0.188 4.188 9 C 0.217 3.783 10 N -0.309 5.309 11 C 0.022 3.978 12 C -0.146 4.146 13 C -0.011 4.011 14 C -0.581 4.581 15 H 0.081 0.919 16 C -0.198 4.198 17 N -0.571 5.571 18 Si 0.787 3.213 19 H -0.193 1.193 20 H -0.211 1.211 21 H -0.193 1.193 22 N -0.302 5.302 23 C 0.032 3.968 24 C -0.149 4.149 25 C -0.208 4.208 26 N 0.078 4.922 27 N -0.105 5.105 28 H 0.124 0.876 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.211 0.789 34 H 0.262 0.738 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.015 0.985 40 H 0.014 0.986 41 H 0.072 0.928 42 H 0.115 0.885 43 H 0.097 0.903 44 H 0.127 0.873 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -28.146 -7.213 0.106 29.056 hybrid contribution 1.413 -1.495 0.017 2.057 sum -26.733 -8.708 0.124 28.115 Atomic orbital electron populations 1.21840 0.90260 1.04597 1.03654 1.23475 0.97214 0.78175 1.03311 1.86639 1.21989 1.34599 1.83208 1.19345 0.81277 0.86397 0.72279 1.90866 1.61138 1.41068 1.46968 1.20656 0.91964 0.90457 1.12513 1.21900 0.96804 0.91787 1.05617 1.20167 0.87426 0.94733 1.16457 1.18000 0.84946 0.87470 0.87909 1.44676 1.00721 1.10722 1.74755 1.21330 0.84305 0.90412 1.01797 1.21650 0.92160 0.98813 1.01960 1.18899 0.92616 0.94161 0.95390 1.21657 0.92283 0.93610 1.50566 0.91900 1.25945 1.03422 0.95569 0.94870 1.70083 1.28916 1.06546 1.51554 0.85545 0.78465 0.78177 0.79118 1.19266 1.21088 1.19253 1.68069 1.22048 1.12848 1.27204 1.20945 0.85226 0.98752 0.91896 1.20783 1.04277 0.85061 1.04799 1.22314 1.04131 0.75856 1.18516 1.42939 1.03569 1.06442 1.39220 1.73916 1.20682 0.92581 1.23323 0.87607 0.91427 0.91422 0.90527 0.90526 0.78860 0.73817 0.92004 0.91996 0.91660 0.91662 0.98547 0.98555 0.92836 0.88517 0.90281 0.87271 0.77777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.29 71.98 0.74 -0.64 16 2 C 0.05 0.78 6.19 71.98 0.45 1.22 16 3 O -0.35 -7.83 10.23 -56.32 -0.58 -8.40 16 4 C 0.56 14.49 7.97 70.30 0.56 15.05 16 5 O -0.51 -14.45 16.69 19.88 0.33 -14.12 16 6 C -0.01 -0.28 7.11 42.04 0.30 0.02 16 7 C -0.13 -3.18 10.57 22.82 0.24 -2.94 16 8 C -0.06 -1.68 6.76 39.11 0.26 -1.42 16 9 C 0.47 12.83 7.55 134.00 1.01 13.84 16 10 N -0.68 -17.61 5.69 -343.82 -1.96 -19.57 16 11 C 0.14 4.55 5.71 86.38 0.49 5.04 16 12 C -0.11 -3.93 5.27 30.59 0.16 -3.77 16 13 C 0.03 1.35 4.97 29.85 0.15 1.49 16 14 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16 15 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 16 C 0.00 0.00 5.46 84.65 0.46 0.46 16 17 N -0.93 -55.52 13.29 21.45 0.28 -55.24 16 18 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 N -0.57 -15.67 9.60 -181.57 -1.74 -17.41 16 23 C 0.16 3.26 6.70 41.45 0.28 3.54 16 24 C -0.09 -1.19 10.13 71.23 0.72 -0.46 16 25 C -0.08 -1.68 10.74 82.99 0.89 -0.79 16 26 N -0.14 -3.64 3.62 -187.01 -0.68 -4.31 16 27 N -0.26 -7.09 12.14 -48.61 -0.59 -7.68 16 28 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.19 3.78 8.06 -2.91 -0.02 3.76 16 34 H 0.42 9.07 8.24 -92.71 -0.76 8.31 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 41 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 42 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 44 H 0.11 0.75 8.05 -2.39 -0.02 0.73 16 45 H 0.21 2.64 8.05 -2.91 -0.02 2.62 16 Total: -1.00 -71.30 390.92 4.30 -67.00 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.25 Total: 13.19 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 6.95 Total: 1.18 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -4.68 Total: -104.21 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.24 Total: -22.52 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -71.30 4.30 -67.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881918063.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.090 kcal (2) G-P(sol) polarization free energy of solvation -71.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds