Wall clock time and date at job start Tue Mar 31 2020 17:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47532 * 2 1 4 4 C 1.46506 * 119.99693 * 270.00014 * 3 2 1 5 5 C 1.50696 * 109.47358 * 89.99741 * 4 3 2 6 6 H 1.08006 * 119.99732 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00063 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00179 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 119.99976 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47017 * 59.99735 * 9 7 5 11 11 H 1.48494 * 109.47108 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46901 * 299.99817 * 9 7 5 13 13 C 1.34777 * 120.00538 * 89.99523 * 3 2 1 14 14 O 1.21271 * 120.00121 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99641 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47232 * 174.41789 * 15 13 3 17 17 C 1.47015 * 110.99976 * 293.76991 * 16 15 13 18 18 C 1.45103 * 115.50147 * 143.21649 * 17 16 15 19 19 C 1.55236 * 110.06420 * 63.42722 * 18 17 16 20 20 S 1.79281 * 109.69932 * 287.75816 * 19 18 17 21 21 O 1.42101 * 107.92806 * 202.80934 * 20 19 18 22 22 O 1.42092 * 107.93073 * 332.06760 * 20 19 18 23 23 C 1.82382 * 105.88179 * 87.44335 * 20 19 18 24 24 C 1.45426 * 111.00065 * 176.99093 * 16 15 13 25 25 H 1.08996 * 109.57279 * 107.94011 * 24 16 15 26 26 C 1.53000 * 109.57523 * 347.56468 * 24 16 15 27 27 H 1.08998 * 109.47246 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46886 * 300.00425 * 1 2 3 29 29 H 1.08996 * 109.46680 * 60.00212 * 1 2 3 30 30 H 1.09008 * 109.46974 * 119.99551 * 2 1 3 31 31 H 1.09002 * 109.47373 * 239.99494 * 2 1 3 32 32 H 1.09002 * 109.46583 * 209.99709 * 4 3 2 33 33 H 1.08998 * 109.46969 * 329.99511 * 4 3 2 34 34 H 0.96999 * 120.00234 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.47429 * 294.41758 * 15 13 3 36 36 H 1.09007 * 109.47438 * 54.41870 * 15 13 3 37 37 H 1.09003 * 108.27029 * 264.77892 * 17 16 15 38 38 H 1.08997 * 108.27785 * 21.84037 * 17 16 15 39 39 H 1.08996 * 109.37419 * 183.61298 * 18 17 16 40 40 H 1.09001 * 109.37022 * 303.37226 * 18 17 16 41 41 H 1.09000 * 109.43028 * 47.82718 * 19 18 17 42 42 H 1.09004 * 109.43363 * 167.73000 * 19 18 17 43 43 H 1.08999 * 109.22054 * 79.52009 * 23 20 19 44 44 H 1.08998 * 109.21996 * 198.87256 * 23 20 19 45 45 H 1.09006 * 109.46639 * 61.54667 * 26 24 16 46 46 H 1.08995 * 109.47336 * 181.54641 * 26 24 16 47 47 H 1.08995 * 109.47097 * 301.55307 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 1.0069 2.7821 -1.7039 6 1 0.1158 2.7246 -1.0963 7 6 0.9952 3.5046 -2.8782 8 7 2.0800 3.5742 -3.6183 9 14 -0.5613 4.3858 -3.4172 10 1 -0.9528 5.3765 -2.3824 11 1 -0.3138 5.0857 -4.7033 12 1 -1.6544 3.3963 -3.5939 13 6 2.2430 2.0166 1.1671 14 8 2.6469 3.1601 1.1671 15 6 1.9923 1.3061 2.4723 16 7 2.4355 2.1559 3.5855 17 6 3.8946 2.3344 3.5636 18 6 4.3694 3.6469 3.9602 19 6 3.9957 3.9234 5.4413 20 16 2.2320 4.2157 5.5751 21 8 2.0012 4.9625 6.7618 22 8 1.7820 4.7501 4.3378 23 6 1.4686 2.5730 5.7882 24 6 2.1439 1.5314 4.8661 25 1 3.0710 1.1857 5.3232 26 6 1.2003 0.3457 4.6551 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 3.0646 2.7983 -1.1384 33 1 2.5507 1.3450 -2.0284 34 1 2.0719 4.0828 -4.4442 35 1 0.9269 1.0995 2.5747 36 1 2.5474 0.3681 2.4879 37 1 4.3394 1.5945 4.2290 38 1 4.2479 2.1374 2.5515 39 1 5.4527 3.6891 3.8466 40 1 3.9096 4.4047 3.3257 41 1 4.2678 3.0617 6.0508 42 1 4.5361 4.8020 5.7938 43 1 1.5784 2.2582 6.8260 44 1 0.4084 2.6355 5.5431 45 1 1.6843 -0.3949 4.0184 46 1 0.9611 -0.1042 5.6186 47 1 0.2834 0.6915 4.1779 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933312065.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:25 Heat of formation + Delta-G solvation = -102.226446 kcal Electronic energy + Delta-G solvation = -28988.588008 eV Core-core repulsion = 25105.882743 eV Total energy + Delta-G solvation = -3882.705265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.30370 -39.54409 -37.68946 -36.81721 -36.79754 -35.36426 -34.81272 -32.75629 -31.44490 -29.89036 -28.92649 -27.87611 -26.82215 -24.58201 -24.01595 -22.40181 -21.43317 -19.64507 -19.41136 -18.66227 -18.38100 -17.72316 -17.45944 -17.00403 -16.93914 -16.56527 -16.16231 -15.92674 -15.44150 -15.14553 -14.88269 -14.54118 -14.41838 -14.19515 -14.03518 -13.78421 -13.74558 -13.42917 -13.27676 -13.04428 -12.98360 -12.89014 -12.83663 -12.82309 -12.62775 -12.53702 -12.48574 -12.34596 -12.09817 -11.86336 -11.72152 -11.61295 -11.45863 -11.35404 -11.13947 -10.60498 -10.36217 -9.41950 -9.31978 -8.18938 -6.31092 -0.74596 1.33950 1.39495 1.45618 1.99148 2.10682 2.30727 2.42573 2.87496 2.93742 3.10556 3.13629 3.59840 3.73895 3.80533 3.86224 3.98071 4.12982 4.19275 4.34270 4.38466 4.42312 4.50510 4.55750 4.59188 4.60499 4.71566 4.76849 4.80783 4.95249 4.99017 5.05811 5.08078 5.08452 5.11816 5.28646 5.34686 5.40525 5.56240 5.65126 5.85855 5.95741 6.06172 6.13525 6.76960 6.94271 7.34778 7.67900 8.87530 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014884 B = 0.003895 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.712126 B = 7186.407044 C = 7860.750088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.609 5.609 4 C 0.265 3.735 5 C -0.530 4.530 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.958 3.042 10 H -0.285 1.285 11 H -0.278 1.278 12 H -0.259 1.259 13 C 0.487 3.513 14 O -0.571 6.571 15 C 0.050 3.950 16 N -0.538 5.538 17 C 0.027 3.973 18 C -0.097 4.097 19 C -0.604 4.604 20 S 2.411 3.589 21 O -1.009 7.009 22 O -0.976 6.976 23 C -0.571 4.571 24 C 0.073 3.927 25 H 0.121 0.879 26 C -0.167 4.167 27 H 0.092 0.908 28 H 0.051 0.949 29 H 0.033 0.967 30 H 0.110 0.890 31 H 0.073 0.927 32 H -0.006 1.006 33 H 0.021 0.979 34 H 0.265 0.735 35 H 0.125 0.875 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.052 0.948 39 H 0.107 0.893 40 H 0.054 0.946 41 H 0.174 0.826 42 H 0.143 0.857 43 H 0.170 0.830 44 H 0.133 0.867 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.881 -14.922 22.352 27.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.017 4.017 3 N -0.342 5.342 4 C 0.143 3.857 5 C -0.568 4.568 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.783 3.217 10 H -0.211 1.211 11 H -0.203 1.203 12 H -0.183 1.183 13 C 0.275 3.725 14 O -0.449 6.449 15 C -0.080 4.080 16 N -0.263 5.263 17 C -0.100 4.100 18 C -0.136 4.136 19 C -0.736 4.736 20 S 2.599 3.401 21 O -1.006 7.006 22 O -0.973 6.973 23 C -0.704 4.704 24 C -0.036 4.036 25 H 0.139 0.861 26 C -0.225 4.225 27 H 0.111 0.889 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.012 0.988 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.142 0.858 36 H 0.124 0.876 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.125 0.875 40 H 0.073 0.927 41 H 0.192 0.808 42 H 0.161 0.839 43 H 0.188 0.812 44 H 0.151 0.849 45 H 0.102 0.898 46 H 0.108 0.892 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.482 -12.942 22.087 25.719 hybrid contribution -0.087 0.082 -1.036 1.043 sum 2.394 -12.860 21.051 24.784 Atomic orbital electron populations 1.22173 0.95892 1.02738 1.01501 1.21738 0.94938 0.81154 1.03898 1.48301 1.64756 1.15023 1.06102 1.18641 0.95033 0.91403 0.80615 1.21688 0.98048 1.31167 1.05937 0.93062 1.25771 0.99524 0.97063 0.96758 1.70031 1.29414 1.42703 1.14863 0.85620 0.80015 0.78875 0.77218 1.21074 1.20317 1.18313 1.21352 0.77876 0.86836 0.86462 1.90702 1.46932 1.19612 1.87646 1.22321 1.04432 0.94748 0.86480 1.62758 1.14863 1.46437 1.02239 1.21193 0.87371 0.98519 1.02903 1.20168 1.03176 0.98868 0.91354 1.30390 1.23227 1.14309 1.05627 1.07692 0.79829 0.79516 0.73016 1.93482 1.86020 1.70263 1.50835 1.93590 1.80281 1.77597 1.45797 1.30677 1.12653 1.17147 1.09966 1.22249 1.01064 0.92463 0.87843 0.86127 1.22338 0.99214 0.96519 1.04412 0.88885 0.92968 0.94769 0.87199 0.90851 0.98832 0.96126 0.92632 0.85764 0.87612 0.88450 0.92923 0.87454 0.92714 0.80779 0.83876 0.81240 0.84870 0.89810 0.89201 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.45 10.24 71.98 0.74 -3.71 16 2 C 0.10 2.92 6.00 86.38 0.52 3.44 16 3 N -0.61 -24.97 2.46 -826.15 -2.03 -27.00 16 4 C 0.26 14.36 5.20 85.63 0.45 14.80 16 5 C -0.53 -31.15 8.92 25.60 0.23 -30.92 16 6 H 0.05 3.01 7.42 -2.91 -0.02 2.99 16 7 C 0.01 0.43 5.46 84.65 0.46 0.89 16 8 N -0.93 -57.65 13.29 21.45 0.28 -57.36 16 9 Si 0.96 46.90 29.54 68.60 2.03 48.92 16 10 H -0.28 -14.28 7.11 99.48 0.71 -13.58 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 13 C 0.49 19.62 6.88 87.66 0.60 20.22 16 14 O -0.57 -29.89 14.79 -3.00 -0.04 -29.94 16 15 C 0.05 1.23 2.81 85.56 0.24 1.47 16 16 N -0.54 -12.64 3.03 -890.25 -2.70 -15.34 16 17 C 0.03 0.58 3.93 83.88 0.33 0.91 16 18 C -0.10 -2.25 5.54 28.96 0.16 -2.09 16 19 C -0.60 -9.83 5.85 72.75 0.43 -9.40 16 20 S 2.41 58.98 4.89 -56.49 -0.28 58.70 16 21 O -1.01 -30.58 18.05 -127.27 -2.30 -32.88 16 22 O -0.98 -37.77 15.90 -127.27 -2.02 -39.79 16 23 C -0.57 -7.93 6.14 72.54 0.45 -7.48 16 24 C 0.07 0.89 2.56 45.75 0.12 1.01 16 25 H 0.12 0.51 6.27 -2.39 -0.01 0.50 16 26 C -0.17 -1.43 7.80 71.98 0.56 -0.86 16 27 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.05 1.36 7.39 -2.39 -0.02 1.34 16 29 H 0.03 1.21 7.26 -2.39 -0.02 1.19 16 30 H 0.11 1.93 6.29 -2.38 -0.01 1.92 16 31 H 0.07 2.05 7.89 -2.39 -0.02 2.03 16 32 H -0.01 -0.41 7.42 -2.39 -0.02 -0.42 16 33 H 0.02 1.14 7.89 -2.39 -0.02 1.12 16 34 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 35 H 0.12 2.70 5.34 -2.39 -0.01 2.68 16 36 H 0.11 1.65 6.13 -2.38 -0.01 1.63 16 37 H 0.10 1.02 6.49 -2.39 -0.02 1.00 16 38 H 0.05 1.46 6.31 -2.39 -0.02 1.44 16 39 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.05 1.91 7.22 -2.39 -0.02 1.89 16 41 H 0.17 0.96 7.80 -2.49 -0.02 0.94 16 42 H 0.14 2.10 8.14 -2.50 -0.02 2.08 16 43 H 0.17 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.13 2.02 7.97 -2.39 -0.02 2.01 16 45 H 0.08 0.49 6.61 -2.38 -0.02 0.47 16 46 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 47 H 0.06 0.70 6.86 -2.39 -0.02 0.68 16 Total: -1.00 -97.52 368.21 -0.82 -98.34 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.96 Total: 8.05 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: 5.28 Total: -11.72 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -4.44 Total: -99.69 kcal Atomic # 8 Polarization: -98.24 SS G_CDS: -4.37 Total: -102.61 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Atomic # 16 Polarization: 58.98 SS G_CDS: -0.28 Total: 58.70 kcal Total: -97.52 -0.82 -98.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933312065.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.887 kcal (2) G-P(sol) polarization free energy of solvation -97.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds