Wall clock time and date at job start Tue Mar 31 2020 18:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21275 * 119.99936 * 2 1 4 4 N 1.34777 * 120.00028 * 180.02562 * 2 1 3 5 5 C 1.39450 * 120.00172 * 176.53384 * 4 2 1 6 6 C 1.39373 * 120.40037 * 34.93527 * 5 4 2 7 7 C 1.38281 * 118.43623 * 180.02562 * 6 5 4 8 8 C 1.39487 * 119.14737 * 0.02562 * 7 6 5 9 9 C 1.47912 * 119.64474 * 179.97438 * 8 7 6 10 10 O 1.21550 * 120.00112 * 23.81410 * 9 8 7 11 11 N 1.34781 * 120.00336 * 203.81666 * 9 8 7 12 12 C 1.46921 * 120.62711 * 359.92260 * 11 9 8 13 13 C 1.53198 * 108.77573 * 126.41184 * 12 11 9 14 14 C 1.53037 * 109.30959 * 54.63169 * 13 12 11 15 15 C 1.53032 * 109.54219 * 298.63647 * 14 13 12 16 16 H 1.09001 * 109.49872 * 301.38292 * 15 14 13 17 17 N 1.46498 * 109.50052 * 181.31590 * 15 14 13 18 18 C 1.36935 * 120.00372 * 154.99802 * 17 15 14 19 19 H 1.08002 * 119.99731 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00496 * 180.02562 * 18 17 15 21 21 N 1.31614 * 120.00308 * 179.72790 * 20 18 17 22 22 Si 1.86802 * 119.99595 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47267 * 89.99847 * 22 20 18 24 24 H 1.48496 * 109.47130 * 210.00025 * 22 20 18 25 25 H 1.48503 * 109.47013 * 329.99792 * 22 20 18 26 26 C 1.46917 * 120.63299 * 179.97438 * 11 9 8 27 27 N 1.32816 * 120.71261 * 0.24914 * 8 7 6 28 28 C 1.31348 * 121.70843 * 359.47616 * 27 8 7 29 29 H 1.09000 * 109.47201 * 240.00247 * 1 2 3 30 30 H 1.08999 * 109.46858 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.47211 * 120.00342 * 1 2 3 32 32 H 0.97009 * 119.99670 * 356.52768 * 4 2 1 33 33 H 1.08000 * 120.77915 * 0.04204 * 6 5 4 34 34 H 1.08001 * 120.42573 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.58748 * 6.63085 * 12 11 9 36 36 H 1.09000 * 109.58877 * 246.20101 * 12 11 9 37 37 H 1.09007 * 109.49677 * 294.68307 * 13 12 11 38 38 H 1.08998 * 109.49875 * 174.59074 * 13 12 11 39 39 H 1.09000 * 109.46130 * 178.61080 * 14 13 12 40 40 H 1.08999 * 109.44741 * 58.65270 * 14 13 12 41 41 H 0.97006 * 120.00159 * 335.00294 * 17 15 14 42 42 H 0.97001 * 120.00160 * 180.02562 * 21 20 18 43 43 H 1.08995 * 109.59115 * 113.79917 * 26 11 9 44 44 H 1.09008 * 109.58974 * 353.37332 * 26 11 9 45 45 H 1.08001 * 119.60594 * 180.26809 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5735 -1.1683 -0.0735 6 6 4.3131 -0.1633 0.5473 7 6 5.6918 -0.2038 0.4486 8 6 6.2916 -1.2416 -0.2646 9 6 7.7655 -1.2953 -0.3778 10 8 8.4594 -0.7458 0.4554 11 7 8.3391 -1.9534 -1.4046 12 6 7.5137 -2.6237 -2.4185 13 6 7.9344 -2.1256 -3.8048 14 6 9.4401 -2.3339 -3.9820 15 6 10.1966 -1.5231 -2.9273 16 1 9.9420 -0.4681 -3.0279 17 7 11.6386 -1.6983 -3.1174 18 6 12.5089 -0.7359 -2.6799 19 1 12.1322 0.1522 -2.1943 20 6 13.8752 -0.9016 -2.8604 21 7 14.7113 0.0260 -2.4447 22 14 14.5267 -2.4374 -3.7010 23 1 14.6133 -2.2017 -5.1646 24 1 15.8762 -2.7574 -3.1704 25 1 13.6084 -3.5740 -3.4361 26 6 9.8015 -2.0150 -1.5308 27 7 5.5535 -2.1791 -0.8479 28 6 4.2424 -2.1736 -0.7694 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8899 32 1 1.6971 -2.0065 0.0500 33 1 3.8210 0.6282 1.0929 34 1 6.2963 0.5589 0.9170 35 1 6.4632 -2.3877 -2.2488 36 1 7.6629 -3.7017 -2.3567 37 1 7.7006 -1.0649 -3.8967 38 1 7.3971 -2.6847 -4.5708 39 1 9.7380 -2.0031 -4.9769 40 1 9.6764 -3.3916 -3.8653 41 1 11.9770 -2.4961 -3.5533 42 1 15.6661 -0.0897 -2.5712 43 1 10.1369 -3.0433 -1.3968 44 1 10.2607 -1.3773 -0.7752 45 1 3.6756 -2.9554 -1.2533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999307326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:40 Heat of formation + Delta-G solvation = 2.808595 kcal Electronic energy + Delta-G solvation = -28111.645700 eV Core-core repulsion = 24130.343897 eV Total energy + Delta-G solvation = -3981.301804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.43454 -40.25246 -38.98051 -37.28767 -35.67384 -34.54682 -32.77892 -32.16991 -31.53151 -31.21937 -29.66252 -28.49728 -25.76489 -24.28167 -23.95364 -23.40131 -21.67366 -21.32111 -20.62864 -19.40943 -18.47001 -17.74306 -17.48863 -17.16150 -16.83296 -15.95054 -15.58682 -15.27763 -14.91244 -14.73450 -14.52136 -14.33281 -14.14791 -13.95110 -13.63053 -13.48216 -13.28329 -13.14148 -12.91713 -12.75473 -12.56609 -12.43422 -12.36302 -11.54747 -11.39501 -11.12593 -10.86282 -10.83513 -10.63611 -10.60262 -10.26987 -10.09824 -9.88659 -9.82863 -9.55384 -9.18079 -9.04028 -8.80376 -8.29161 -7.24981 -5.73222 -3.10275 0.34347 0.90018 1.92754 2.38233 2.77310 3.15264 3.39883 3.42222 3.47832 3.57927 3.97661 4.07496 4.37212 4.51651 4.57985 4.61543 4.68209 4.73670 4.81848 5.04607 5.19397 5.23143 5.28150 5.32190 5.48507 5.49759 5.58805 5.67952 5.77591 5.80835 5.89052 6.00991 6.04299 6.15345 6.19546 6.32020 6.40095 6.47386 6.67391 6.77520 6.78589 6.98624 7.36029 7.46476 7.69293 8.03125 8.34938 8.45765 9.22904 9.94546 10.13496 11.44824 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027736 B = 0.002365 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.261950 B =11838.122679 C =12298.096632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.510 3.490 3 O -0.520 6.520 4 N -0.669 5.669 5 C 0.107 3.893 6 C -0.084 4.084 7 C -0.090 4.090 8 C 0.073 3.927 9 C 0.564 3.436 10 O -0.532 6.532 11 N -0.584 5.584 12 C 0.082 3.918 13 C -0.132 4.132 14 C -0.130 4.130 15 C 0.173 3.827 16 H 0.060 0.940 17 N -0.742 5.742 18 C -0.246 4.246 19 H 0.092 0.908 20 C 0.006 3.994 21 N -0.931 5.931 22 Si 0.885 3.115 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C 0.090 3.910 27 N -0.429 5.429 28 C 0.071 3.929 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.416 0.584 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.130 0.870 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.362 0.638 42 H 0.259 0.741 43 H 0.062 0.938 44 H 0.095 0.905 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.953 -7.470 2.839 34.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.298 3.702 3 O -0.395 6.395 4 N -0.316 5.316 5 C 0.010 3.990 6 C -0.112 4.112 7 C -0.111 4.111 8 C -0.065 4.065 9 C 0.350 3.650 10 O -0.409 6.409 11 N -0.316 5.316 12 C -0.041 4.041 13 C -0.170 4.170 14 C -0.168 4.168 15 C 0.063 3.937 16 H 0.078 0.922 17 N -0.384 5.384 18 C -0.376 4.376 19 H 0.110 0.890 20 C -0.190 4.190 21 N -0.579 5.579 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.034 4.034 27 N -0.140 5.140 28 C -0.091 4.091 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.252 0.748 33 H 0.172 0.828 34 H 0.170 0.830 35 H 0.147 0.853 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.114 0.886 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -32.606 -6.815 2.903 33.437 hybrid contribution -0.046 -0.994 -0.188 1.013 sum -32.652 -7.809 2.715 33.682 Atomic orbital electron populations 1.21933 0.90129 1.06334 1.04778 1.21146 0.91132 0.82964 0.74943 1.90776 1.70488 1.31225 1.46990 1.43440 1.04461 1.10383 1.73279 1.18961 0.83836 0.98209 0.97980 1.21704 0.93137 0.98921 0.97401 1.22068 0.94507 0.98081 0.96476 1.21288 0.94554 0.93080 0.97576 1.17812 0.85629 0.79355 0.82231 1.90828 1.62818 1.46054 1.41158 1.48081 1.08034 1.51036 1.24408 1.22682 0.98338 0.96586 0.86506 1.21926 0.96569 1.01689 0.96853 1.21876 0.94349 1.00483 1.00124 1.20468 0.84285 0.98041 0.90931 0.92243 1.42738 1.00846 1.23179 1.71675 1.19114 0.87308 0.99184 1.31992 0.89037 1.24687 0.95784 0.97704 1.00844 1.69706 1.02186 1.34094 1.51872 0.86545 0.78347 0.83957 0.79646 1.21098 1.21745 1.20311 1.22771 0.76691 1.02019 1.01895 1.67634 1.05995 1.24371 1.16028 1.22753 0.90492 0.98453 0.97371 0.88843 0.88331 0.88799 0.74765 0.82821 0.83002 0.85324 0.91780 0.91861 0.91157 0.91533 0.92208 0.80480 0.93045 0.91940 0.88634 0.81834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.29 10.32 36.01 0.37 0.08 16 2 C 0.51 3.11 7.78 -10.99 -0.09 3.03 16 3 O -0.52 -5.71 14.58 5.56 0.08 -5.63 16 4 N -0.67 -3.10 5.33 -9.74 -0.05 -3.15 16 5 C 0.11 0.87 6.32 -83.55 -0.53 0.34 16 6 C -0.08 -0.87 8.78 -39.14 -0.34 -1.22 16 7 C -0.09 -1.11 9.61 -39.10 -0.38 -1.49 16 8 C 0.07 1.00 6.41 -83.01 -0.53 0.47 16 9 C 0.56 9.83 7.59 -12.30 -0.09 9.74 16 10 O -0.53 -11.15 15.97 5.32 0.08 -11.06 16 11 N -0.58 -9.76 2.97 -173.83 -0.52 -10.27 16 12 C 0.08 1.07 5.97 -3.71 -0.02 1.05 16 13 C -0.13 -1.70 6.08 -26.61 -0.16 -1.86 16 14 C -0.13 -2.04 5.35 -26.70 -0.14 -2.19 16 15 C 0.17 3.48 2.92 -67.79 -0.20 3.28 16 16 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 17 N -0.74 -17.88 4.93 -53.29 -0.26 -18.14 16 18 C -0.25 -7.11 10.41 -15.06 -0.16 -7.27 16 19 H 0.09 2.88 8.06 -52.49 -0.42 2.45 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 21 N -0.93 -29.86 13.97 55.49 0.78 -29.09 16 22 Si 0.88 22.39 27.74 -169.99 -4.71 17.67 16 23 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 26 C 0.09 1.77 6.02 -3.69 -0.02 1.74 16 27 N -0.43 -4.82 6.43 -9.64 -0.06 -4.88 16 28 C 0.07 0.56 11.12 -17.34 -0.19 0.37 16 29 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 30 H 0.10 0.24 8.12 -51.93 -0.42 -0.18 16 31 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 32 H 0.42 0.28 8.82 -40.82 -0.36 -0.08 16 33 H 0.15 1.60 6.34 -52.49 -0.33 1.27 16 34 H 0.15 1.88 7.82 -52.49 -0.41 1.47 16 35 H 0.13 1.55 4.06 -74.55 -0.30 1.25 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.36 8.47 5.66 -40.82 -0.23 8.23 16 42 H 0.26 7.90 8.31 -40.82 -0.34 7.57 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.10 2.18 7.00 -51.92 -0.36 1.82 16 45 H 0.16 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -37.86 368.31 -7.93 -45.80 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.24 Total: 7.05 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -2.58 Total: 6.16 kcal Atomic # 7 Polarization: -65.41 SS G_CDS: -0.12 Total: -65.53 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.17 Total: -16.69 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.71 Total: 17.67 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.86 -7.93 -45.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999307326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.605 kcal (2) G-P(sol) polarization free energy of solvation -37.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds