Wall clock time and date at job start Tue Mar 31 2020 18:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21275 * 119.99936 * 2 1 4 4 N 1.34777 * 120.00028 * 180.02562 * 2 1 3 5 5 C 1.39450 * 120.00172 * 176.53384 * 4 2 1 6 6 C 1.39373 * 120.40037 * 34.93527 * 5 4 2 7 7 C 1.38281 * 118.43623 * 180.02562 * 6 5 4 8 8 C 1.39487 * 119.14737 * 0.02562 * 7 6 5 9 9 C 1.47912 * 119.64474 * 179.97438 * 8 7 6 10 10 O 1.21550 * 120.00112 * 23.81410 * 9 8 7 11 11 N 1.34781 * 120.00336 * 203.81666 * 9 8 7 12 12 C 1.46921 * 120.62711 * 359.92260 * 11 9 8 13 13 C 1.53198 * 108.77573 * 126.41184 * 12 11 9 14 14 C 1.53037 * 109.30959 * 54.63169 * 13 12 11 15 15 C 1.53032 * 109.54219 * 298.63647 * 14 13 12 16 16 H 1.09001 * 109.49872 * 301.38292 * 15 14 13 17 17 N 1.46498 * 109.50052 * 181.31590 * 15 14 13 18 18 C 1.36935 * 120.00372 * 154.99802 * 17 15 14 19 19 H 1.08002 * 119.99731 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00496 * 180.02562 * 18 17 15 21 21 N 1.31614 * 120.00308 * 179.72790 * 20 18 17 22 22 Si 1.86802 * 119.99595 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47267 * 89.99847 * 22 20 18 24 24 H 1.48496 * 109.47130 * 210.00025 * 22 20 18 25 25 H 1.48503 * 109.47013 * 329.99792 * 22 20 18 26 26 C 1.46917 * 120.63299 * 179.97438 * 11 9 8 27 27 N 1.32816 * 120.71261 * 0.24914 * 8 7 6 28 28 C 1.31348 * 121.70843 * 359.47616 * 27 8 7 29 29 H 1.09000 * 109.47201 * 240.00247 * 1 2 3 30 30 H 1.08999 * 109.46858 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.47211 * 120.00342 * 1 2 3 32 32 H 0.97009 * 119.99670 * 356.52768 * 4 2 1 33 33 H 1.08000 * 120.77915 * 0.04204 * 6 5 4 34 34 H 1.08001 * 120.42573 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.58748 * 6.63085 * 12 11 9 36 36 H 1.09000 * 109.58877 * 246.20101 * 12 11 9 37 37 H 1.09007 * 109.49677 * 294.68307 * 13 12 11 38 38 H 1.08998 * 109.49875 * 174.59074 * 13 12 11 39 39 H 1.09000 * 109.46130 * 178.61080 * 14 13 12 40 40 H 1.08999 * 109.44741 * 58.65270 * 14 13 12 41 41 H 0.97006 * 120.00159 * 335.00294 * 17 15 14 42 42 H 0.97001 * 120.00160 * 180.02562 * 21 20 18 43 43 H 1.08995 * 109.59115 * 113.79917 * 26 11 9 44 44 H 1.09008 * 109.58974 * 353.37332 * 26 11 9 45 45 H 1.08001 * 119.60594 * 180.26809 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5735 -1.1683 -0.0735 6 6 4.3131 -0.1633 0.5473 7 6 5.6918 -0.2038 0.4486 8 6 6.2916 -1.2416 -0.2646 9 6 7.7655 -1.2953 -0.3778 10 8 8.4594 -0.7458 0.4554 11 7 8.3391 -1.9534 -1.4046 12 6 7.5137 -2.6237 -2.4185 13 6 7.9344 -2.1256 -3.8048 14 6 9.4401 -2.3339 -3.9820 15 6 10.1966 -1.5231 -2.9273 16 1 9.9420 -0.4681 -3.0279 17 7 11.6386 -1.6983 -3.1174 18 6 12.5089 -0.7359 -2.6799 19 1 12.1322 0.1522 -2.1943 20 6 13.8752 -0.9016 -2.8604 21 7 14.7113 0.0260 -2.4447 22 14 14.5267 -2.4374 -3.7010 23 1 14.6133 -2.2017 -5.1646 24 1 15.8762 -2.7574 -3.1704 25 1 13.6084 -3.5740 -3.4361 26 6 9.8015 -2.0150 -1.5308 27 7 5.5535 -2.1791 -0.8479 28 6 4.2424 -2.1736 -0.7694 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8899 32 1 1.6971 -2.0065 0.0500 33 1 3.8210 0.6282 1.0929 34 1 6.2963 0.5589 0.9170 35 1 6.4632 -2.3877 -2.2488 36 1 7.6629 -3.7017 -2.3567 37 1 7.7006 -1.0649 -3.8967 38 1 7.3971 -2.6847 -4.5708 39 1 9.7380 -2.0031 -4.9769 40 1 9.6764 -3.3916 -3.8653 41 1 11.9770 -2.4961 -3.5533 42 1 15.6661 -0.0897 -2.5712 43 1 10.1369 -3.0433 -1.3968 44 1 10.2607 -1.3773 -0.7752 45 1 3.6756 -2.9554 -1.2533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999307326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:39 Heat of formation + Delta-G solvation = -26.541829 kcal Electronic energy + Delta-G solvation = -28112.918430 eV Core-core repulsion = 24130.343897 eV Total energy + Delta-G solvation = -3982.574534 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.25631 -41.21117 -39.97510 -38.74739 -36.50832 -36.15936 -34.10182 -33.42347 -32.93164 -32.19786 -30.65418 -29.70972 -26.93544 -25.69181 -25.17996 -24.46548 -23.12144 -22.28780 -21.70427 -20.76701 -19.57908 -19.10939 -18.64518 -18.06544 -17.68343 -16.92149 -16.79058 -16.50254 -16.27538 -15.84041 -15.70384 -15.59258 -15.28818 -15.02416 -14.82784 -14.76094 -14.45964 -14.28293 -14.02505 -13.84104 -13.74450 -13.34658 -13.16927 -13.06686 -12.96094 -12.53779 -12.17805 -12.09582 -11.99810 -11.90917 -11.84643 -11.44969 -11.38001 -11.27298 -11.11482 -10.74239 -10.15972 -9.88693 -9.48775 -9.25872 -8.05336 -5.41920 -0.55301 0.09734 1.35817 1.36091 1.41962 1.48902 1.67072 1.81842 2.00380 2.46538 2.64007 3.03088 3.24836 3.49475 3.57273 3.66039 3.73732 3.85550 3.94381 4.03290 4.07561 4.21634 4.32220 4.34844 4.54050 4.55691 4.66867 4.70433 4.72441 4.76642 4.84239 4.90961 4.98343 5.04293 5.10747 5.16157 5.21197 5.33987 5.43737 5.48589 5.66358 5.74615 6.18013 6.30248 6.34354 6.57279 7.01151 7.04075 7.05243 7.75231 7.98647 9.16421 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027736 B = 0.002365 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.261950 B =11838.122679 C =12298.096632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.505 3.495 3 O -0.575 6.575 4 N -0.650 5.650 5 C 0.126 3.874 6 C -0.094 4.094 7 C -0.099 4.099 8 C 0.049 3.951 9 C 0.555 3.445 10 O -0.587 6.587 11 N -0.584 5.584 12 C 0.079 3.921 13 C -0.124 4.124 14 C -0.121 4.121 15 C 0.170 3.830 16 H 0.028 0.972 17 N -0.742 5.742 18 C -0.239 4.239 19 H 0.043 0.957 20 C -0.066 4.066 21 N -0.985 5.985 22 Si 0.966 3.034 23 H -0.273 1.273 24 H -0.296 1.296 25 H -0.246 1.246 26 C 0.102 3.898 27 N -0.431 5.431 28 C 0.089 3.911 29 H 0.120 0.880 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.440 0.560 33 H 0.149 0.851 34 H 0.134 0.866 35 H 0.147 0.853 36 H 0.084 0.916 37 H 0.051 0.949 38 H 0.114 0.886 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.371 0.629 42 H 0.259 0.741 43 H 0.072 0.928 44 H 0.046 0.954 45 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.448 -11.710 0.621 40.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.296 3.704 3 O -0.454 6.454 4 N -0.298 5.298 5 C 0.027 3.973 6 C -0.122 4.122 7 C -0.121 4.121 8 C -0.086 4.086 9 C 0.343 3.657 10 O -0.467 6.467 11 N -0.315 5.315 12 C -0.042 4.042 13 C -0.162 4.162 14 C -0.159 4.159 15 C 0.061 3.939 16 H 0.047 0.953 17 N -0.385 5.385 18 C -0.370 4.370 19 H 0.061 0.939 20 C -0.257 4.257 21 N -0.634 5.634 22 Si 0.791 3.209 23 H -0.199 1.199 24 H -0.222 1.222 25 H -0.171 1.171 26 C -0.023 4.023 27 N -0.142 5.142 28 C -0.075 4.075 29 H 0.139 0.861 30 H 0.107 0.893 31 H 0.140 0.860 32 H 0.281 0.719 33 H 0.167 0.833 34 H 0.152 0.848 35 H 0.164 0.836 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.132 0.868 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.205 0.795 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.064 0.936 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -37.211 -11.124 0.662 38.843 hybrid contribution 1.100 0.416 0.582 1.312 sum -36.111 -10.707 1.244 37.685 Atomic orbital electron populations 1.21972 0.86187 1.06637 1.07337 1.22066 0.92885 0.82197 0.73218 1.90775 1.71815 1.33302 1.49462 1.43424 1.02844 1.11517 1.72012 1.19070 0.85537 0.96791 0.95898 1.21688 0.92262 1.00011 0.98226 1.21944 0.95486 0.97826 0.96861 1.20614 0.92389 0.95070 1.00569 1.18468 0.87431 0.78263 0.81508 1.90783 1.64571 1.48233 1.43128 1.48164 1.06906 1.51173 1.25238 1.23025 0.98592 0.97236 0.85345 1.21935 0.94617 1.01810 0.97862 1.21810 0.95642 1.00368 0.98071 1.20624 0.82787 0.97505 0.92984 0.95343 1.42632 1.01949 1.22361 1.71593 1.18958 0.88384 0.98744 1.30908 0.93873 1.25651 0.95869 1.01966 1.02251 1.69920 1.02483 1.36993 1.54043 0.85265 0.77474 0.79730 0.78392 1.19873 1.22239 1.17062 1.22303 0.78990 1.01142 0.99906 1.67484 1.07481 1.23252 1.16010 1.23517 0.89248 0.98789 0.95913 0.86122 0.89275 0.86046 0.71850 0.83307 0.84821 0.83632 0.89827 0.93016 0.86813 0.91174 0.90324 0.79455 0.93209 0.91004 0.93554 0.76610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.08 10.32 71.24 0.74 0.81 16 2 C 0.51 4.76 7.78 87.66 0.68 5.45 16 3 O -0.58 -12.20 14.58 -3.02 -0.04 -12.24 16 4 N -0.65 -3.39 5.33 -303.12 -1.62 -5.00 16 5 C 0.13 1.66 6.32 38.48 0.24 1.91 16 6 C -0.09 -1.94 8.78 22.55 0.20 -1.75 16 7 C -0.10 -2.62 9.61 22.58 0.22 -2.41 16 8 C 0.05 1.38 6.41 41.86 0.27 1.65 16 9 C 0.56 20.62 7.59 86.81 0.66 21.28 16 10 O -0.59 -27.25 15.97 -3.87 -0.06 -27.31 16 11 N -0.58 -19.94 2.97 -822.14 -2.44 -22.39 16 12 C 0.08 1.87 5.97 86.37 0.52 2.38 16 13 C -0.12 -2.80 6.08 30.67 0.19 -2.61 16 14 C -0.12 -3.52 5.35 30.62 0.16 -3.36 16 15 C 0.17 7.02 2.92 45.08 0.13 7.16 16 16 H 0.03 1.33 8.08 -2.39 -0.02 1.31 16 17 N -0.74 -36.33 4.93 -322.50 -1.59 -37.91 16 18 C -0.24 -14.54 10.41 84.03 0.88 -13.67 16 19 H 0.04 2.97 8.06 -2.91 -0.02 2.95 16 20 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 21 N -0.98 -66.10 13.97 21.65 0.30 -65.79 16 22 Si 0.97 46.60 27.74 68.60 1.90 48.50 16 23 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 25 H -0.25 -10.54 6.52 99.48 0.65 -9.90 16 26 C 0.10 4.18 6.02 86.38 0.52 4.70 16 27 N -0.43 -8.61 6.43 -184.42 -1.19 -9.79 16 28 C 0.09 1.01 11.12 85.04 0.95 1.96 16 29 H 0.12 -0.65 8.14 -2.39 -0.02 -0.67 16 30 H 0.09 0.21 8.12 -2.39 -0.02 0.19 16 31 H 0.12 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.44 -1.87 8.82 -92.70 -0.82 -2.69 16 33 H 0.15 3.23 6.34 -2.91 -0.02 3.21 16 34 H 0.13 3.86 7.82 -2.91 -0.02 3.83 16 35 H 0.15 3.04 4.06 -47.05 -0.19 2.85 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.37 16.78 5.66 -92.70 -0.52 16.26 16 42 H 0.26 16.43 8.31 -92.71 -0.77 15.66 16 43 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 44 H 0.05 2.33 7.00 -2.38 -0.02 2.32 16 45 H 0.22 0.22 8.06 -2.91 -0.02 0.20 16 Total: -1.00 -92.95 368.31 1.53 -91.41 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -0.54 Total: 20.63 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: 6.81 Total: 19.89 kcal Atomic # 7 Polarization: -134.36 SS G_CDS: -6.53 Total: -140.89 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -0.11 Total: -39.55 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.90 Total: 48.50 kcal Total: -92.95 1.53 -91.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999307326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.870 kcal (2) G-P(sol) polarization free energy of solvation -92.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds