Wall clock time and date at job start Tue Mar 31 2020 17:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46950 * 2 1 4 4 N 1.28393 * 119.10237 * 270.27477 * 3 2 1 5 5 C 1.31405 * 122.26183 * 180.29303 * 4 3 2 6 6 C 1.47890 * 119.88895 * 179.70497 * 5 4 3 7 7 O 1.21556 * 119.99697 * 179.73202 * 6 5 4 8 8 N 1.34774 * 120.00385 * 359.72926 * 6 5 4 9 9 C 1.46495 * 120.00316 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.46947 * 180.02562 * 9 8 6 11 11 C 1.29452 * 117.69181 * 95.00964 * 10 9 8 12 12 C 1.50330 * 123.65116 * 180.86081 * 11 10 9 13 13 N 1.47004 * 109.16260 * 349.01076 * 12 11 10 14 14 C 1.36934 * 121.37760 * 222.97150 * 13 12 11 15 15 H 1.07997 * 120.00453 * 155.97397 * 14 13 12 16 16 C 1.38809 * 119.99814 * 335.97601 * 14 13 12 17 17 N 1.31627 * 120.00143 * 344.51267 * 16 14 13 18 18 Si 1.86804 * 120.00244 * 164.51268 * 16 14 13 19 19 H 1.48495 * 109.47006 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47031 * 119.99992 * 18 16 14 21 21 H 1.48493 * 109.47107 * 240.00266 * 18 16 14 22 22 C 1.47341 * 117.24851 * 42.95249 * 13 12 11 23 23 C 1.49971 * 117.69408 * 274.74004 * 10 9 8 24 24 C 1.41579 * 120.21787 * 359.43716 * 5 4 3 25 25 C 1.36329 * 118.23394 * 0.26597 * 24 5 4 26 26 C 1.34616 * 119.10240 * 90.00089 * 3 2 1 27 27 O 1.21980 * 120.22228 * 359.97438 * 26 3 2 28 28 H 1.08997 * 109.46831 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46968 * 299.99401 * 1 2 3 30 30 H 1.08995 * 109.46972 * 59.99847 * 1 2 3 31 31 H 1.09004 * 109.47399 * 240.00762 * 2 1 3 32 32 H 1.08995 * 109.47497 * 120.00162 * 2 1 3 33 33 H 0.97005 * 119.99468 * 0.02562 * 8 6 5 34 34 H 1.09004 * 109.46792 * 60.00285 * 9 8 6 35 35 H 1.08998 * 109.47627 * 300.00458 * 9 8 6 36 36 H 1.07999 * 118.17544 * 0.87140 * 11 10 9 37 37 H 1.08993 * 109.52463 * 108.91958 * 12 11 10 38 38 H 1.08998 * 109.51662 * 229.11096 * 12 11 10 39 39 H 0.96998 * 120.00224 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.77864 * 57.80878 * 22 13 12 41 41 H 1.08999 * 109.77691 * 178.61148 * 22 13 12 42 42 H 1.08998 * 109.31561 * 281.29253 * 23 10 9 43 43 H 1.08991 * 109.31460 * 40.72321 * 23 10 9 44 44 H 1.07994 * 120.88171 * 180.29493 * 24 5 4 45 45 H 1.07998 * 121.03171 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2214 1.9718 -1.1218 5 6 2.6637 3.2070 -1.1943 6 6 2.8854 3.8341 -2.5152 7 8 3.2899 4.9783 -2.5845 8 7 2.6389 3.1371 -3.6420 9 6 2.8580 3.7585 -4.9505 10 6 2.5099 2.7752 -6.0381 11 6 1.3184 2.8314 -6.5410 12 6 0.8236 1.9049 -7.6165 13 7 1.9593 1.1458 -8.1596 14 6 2.1020 0.9419 -9.5061 15 1 3.0789 0.7441 -9.9219 16 6 0.9909 0.9894 -10.3368 17 7 -0.2189 0.9240 -9.8222 18 14 1.2124 1.1461 -12.1850 19 1 2.6610 1.1995 -12.5071 20 1 0.5990 -0.0268 -12.8583 21 1 0.5533 2.3895 -12.6588 22 6 2.9381 0.6139 -7.1952 23 6 3.5702 1.8047 -6.4658 24 6 2.9234 3.9414 -0.0120 25 6 2.7074 3.3303 1.1873 26 6 2.2365 1.9985 1.1762 27 8 2.0287 1.4119 2.2253 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.3158 2.2241 -3.5867 34 1 3.9044 4.0490 -5.0441 35 1 2.2260 4.6417 -5.0437 36 1 0.6422 3.5861 -6.1673 37 1 0.0926 1.2150 -7.1950 38 1 0.3599 2.4864 -8.4132 39 1 -0.9953 0.9575 -10.4026 40 1 2.4350 -0.0368 -6.4800 41 1 3.7102 0.0548 -7.7238 42 1 4.2725 2.3078 -7.1305 43 1 4.1048 1.4444 -5.5870 44 1 3.2826 4.9587 -0.0591 45 1 2.8902 3.8484 2.1171 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001271959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:37 Heat of formation + Delta-G solvation = 36.765337 kcal Electronic energy + Delta-G solvation = -27935.105841 eV Core-core repulsion = 23955.276512 eV Total energy + Delta-G solvation = -3979.829329 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.52987 -39.86623 -38.13031 -37.76848 -35.79913 -35.07905 -33.10358 -32.33690 -31.30690 -30.66319 -29.74897 -27.28562 -26.17788 -25.10726 -24.12931 -23.01087 -22.76655 -21.48902 -21.05975 -19.09819 -18.48635 -17.67954 -17.17175 -16.97735 -16.39219 -15.94007 -15.76715 -15.36808 -15.02706 -14.72291 -14.52860 -14.08597 -13.92398 -13.81441 -13.67064 -13.60043 -13.38549 -13.15291 -12.81127 -12.55461 -12.31667 -12.09901 -12.00676 -11.63680 -11.61532 -11.42654 -10.96416 -10.87155 -10.78857 -10.56693 -10.38747 -10.32446 -10.13021 -9.87174 -9.65109 -9.19388 -8.92005 -8.73490 -8.12842 -6.79682 -5.84462 -3.23335 0.03926 0.77187 1.68126 2.45525 2.50937 3.20796 3.21046 3.34824 3.42887 3.44696 3.60788 4.23673 4.36591 4.45531 4.48482 4.58091 4.60280 4.83259 5.05757 5.06011 5.22254 5.28655 5.34211 5.34879 5.41497 5.48650 5.53963 5.63201 5.71013 5.74437 5.85582 6.01714 6.10883 6.27783 6.30081 6.45608 6.67889 6.82019 7.09044 7.10948 7.19609 7.25370 7.37164 7.59779 7.67980 7.77349 7.97768 8.33191 9.14803 9.77463 10.35092 11.25994 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019373 B = 0.002431 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.962125 B =11516.512388 C =12397.011899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.103 3.897 3 N -0.333 5.333 4 N -0.176 5.176 5 C 0.018 3.982 6 C 0.584 3.416 7 O -0.532 6.532 8 N -0.699 5.699 9 C 0.156 3.844 10 C -0.168 4.168 11 C -0.121 4.121 12 C 0.193 3.807 13 N -0.595 5.595 14 C -0.245 4.245 15 H 0.069 0.931 16 C -0.001 4.001 17 N -0.909 5.909 18 Si 0.904 3.096 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.289 1.289 22 C 0.144 3.856 23 C -0.090 4.090 24 C -0.029 4.029 25 C -0.194 4.194 26 C 0.480 3.520 27 O -0.526 6.526 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.410 0.590 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.042 0.958 38 H 0.094 0.906 39 H 0.254 0.746 40 H 0.024 0.976 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.164 0.836 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.069 2.241 20.028 20.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.016 4.016 3 N -0.155 5.155 4 N -0.007 5.007 5 C -0.153 4.153 6 C 0.367 3.633 7 O -0.407 6.407 8 N -0.350 5.350 9 C 0.034 3.966 10 C -0.169 4.169 11 C -0.142 4.142 12 C 0.068 3.932 13 N -0.319 5.319 14 C -0.375 4.375 15 H 0.087 0.913 16 C -0.199 4.199 17 N -0.555 5.555 18 Si 0.734 3.266 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.216 1.216 22 C 0.017 3.983 23 C -0.129 4.129 24 C -0.053 4.053 25 C -0.224 4.224 26 C 0.279 3.721 27 O -0.404 6.404 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.246 0.754 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.060 0.940 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.182 0.818 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.835 1.969 19.947 20.408 hybrid contribution -0.007 0.341 -0.317 0.466 sum 3.828 2.311 19.630 20.133 Atomic orbital electron populations 1.22128 0.93338 1.03970 1.03240 1.22146 0.96341 0.77252 1.05867 1.46994 1.51059 1.15017 1.02472 1.71075 1.06145 1.10609 1.12851 1.21834 1.06506 0.90590 0.96404 1.17234 0.78458 0.85388 0.82268 1.90825 1.46623 1.16889 1.86409 1.46090 1.65585 1.17978 1.05303 1.20578 1.01601 0.94897 0.79566 1.20468 0.96885 1.00310 0.99235 1.23311 0.95363 0.98054 0.97430 1.19768 0.89249 0.91475 0.92660 1.44138 1.25605 1.59910 1.02204 1.19222 0.92784 1.43570 0.81896 0.91291 1.24991 0.95375 1.01315 0.98243 1.70014 0.97030 1.54458 1.33983 0.86185 0.77584 0.77369 0.85432 1.20298 1.21752 1.21569 1.20989 0.92694 0.92580 0.92010 1.20789 0.96173 0.96967 0.98997 1.22248 0.91133 1.01612 0.90293 1.22691 1.04986 0.94253 1.00460 1.18123 0.80963 0.89011 0.84016 1.90974 1.52940 1.67086 1.29394 0.89742 0.91857 0.91338 0.87505 0.87329 0.75390 0.91058 0.91157 0.88708 0.94042 0.88835 0.93638 0.95839 0.92464 0.91648 0.92873 0.81849 0.81389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.24 37.16 0.38 -0.81 16 2 C 0.10 0.77 6.27 -4.04 -0.03 0.75 16 3 N -0.33 -3.25 3.22 -63.33 -0.20 -3.46 16 4 N -0.18 -1.77 10.11 33.42 0.34 -1.43 16 5 C 0.02 0.19 6.84 -82.83 -0.57 -0.38 16 6 C 0.58 7.18 7.81 -12.31 -0.10 7.09 16 7 O -0.53 -7.86 16.38 5.32 0.09 -7.77 16 8 N -0.70 -8.44 5.54 -62.42 -0.35 -8.79 16 9 C 0.16 2.11 5.66 -5.20 -0.03 2.08 16 10 C -0.17 -2.67 5.22 -100.99 -0.53 -3.20 16 11 C -0.12 -2.15 9.47 -35.78 -0.34 -2.49 16 12 C 0.19 4.36 5.23 -5.10 -0.03 4.34 16 13 N -0.60 -14.26 3.01 -173.57 -0.52 -14.78 16 14 C -0.25 -6.52 9.71 -15.06 -0.15 -6.66 16 15 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 16 C 0.00 -0.04 5.01 -17.43 -0.09 -0.13 16 17 N -0.91 -25.49 11.08 55.49 0.61 -24.88 16 18 Si 0.90 21.24 29.58 -169.99 -5.03 16.21 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 C 0.14 2.81 6.59 -3.43 -0.02 2.79 16 23 C -0.09 -1.46 5.95 -28.09 -0.17 -1.63 16 24 C -0.03 -0.25 9.68 -39.00 -0.38 -0.63 16 25 C -0.19 -1.68 10.11 -39.12 -0.40 -2.07 16 26 C 0.48 5.23 7.47 -15.18 -0.11 5.11 16 27 O -0.53 -7.03 16.62 4.94 0.08 -6.95 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.11 0.79 7.36 -51.93 -0.38 0.41 16 33 H 0.41 4.63 7.80 -40.82 -0.32 4.31 16 34 H 0.07 0.97 8.11 -51.93 -0.42 0.54 16 35 H 0.07 0.97 7.78 -51.93 -0.40 0.56 16 36 H 0.09 1.50 7.73 -52.49 -0.41 1.10 16 37 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 2.38 6.41 -51.93 -0.33 2.04 16 39 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 1.10 7.96 -51.93 -0.41 0.68 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.16 1.16 7.72 -52.49 -0.41 0.76 16 45 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 378.33 15.07 5.70 5.70 Total: -1.00 -31.62 378.33 -8.25 -39.87 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.44 Total: 2.11 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -2.54 Total: 4.15 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.12 Total: -53.33 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: 0.17 Total: -14.72 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.62 -8.25 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001271959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.635 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds