Wall clock time and date at job start Tue Mar 31 2020 17:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46950 * 2 1 4 4 N 1.28393 * 119.10237 * 270.27477 * 3 2 1 5 5 C 1.31405 * 122.26183 * 180.29303 * 4 3 2 6 6 C 1.47890 * 119.88895 * 179.70497 * 5 4 3 7 7 O 1.21556 * 119.99697 * 179.73202 * 6 5 4 8 8 N 1.34774 * 120.00385 * 359.72926 * 6 5 4 9 9 C 1.46495 * 120.00316 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.46947 * 180.02562 * 9 8 6 11 11 C 1.29452 * 117.69181 * 95.00964 * 10 9 8 12 12 C 1.50330 * 123.65116 * 180.86081 * 11 10 9 13 13 N 1.47004 * 109.16260 * 349.01076 * 12 11 10 14 14 C 1.36934 * 121.37760 * 222.97150 * 13 12 11 15 15 H 1.07997 * 120.00453 * 155.97397 * 14 13 12 16 16 C 1.38809 * 119.99814 * 335.97601 * 14 13 12 17 17 N 1.31627 * 120.00143 * 344.51267 * 16 14 13 18 18 Si 1.86804 * 120.00244 * 164.51268 * 16 14 13 19 19 H 1.48495 * 109.47006 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47031 * 119.99992 * 18 16 14 21 21 H 1.48493 * 109.47107 * 240.00266 * 18 16 14 22 22 C 1.47341 * 117.24851 * 42.95249 * 13 12 11 23 23 C 1.49971 * 117.69408 * 274.74004 * 10 9 8 24 24 C 1.41579 * 120.21787 * 359.43716 * 5 4 3 25 25 C 1.36329 * 118.23394 * 0.26597 * 24 5 4 26 26 C 1.34616 * 119.10240 * 90.00089 * 3 2 1 27 27 O 1.21980 * 120.22228 * 359.97438 * 26 3 2 28 28 H 1.08997 * 109.46831 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46968 * 299.99401 * 1 2 3 30 30 H 1.08995 * 109.46972 * 59.99847 * 1 2 3 31 31 H 1.09004 * 109.47399 * 240.00762 * 2 1 3 32 32 H 1.08995 * 109.47497 * 120.00162 * 2 1 3 33 33 H 0.97005 * 119.99468 * 0.02562 * 8 6 5 34 34 H 1.09004 * 109.46792 * 60.00285 * 9 8 6 35 35 H 1.08998 * 109.47627 * 300.00458 * 9 8 6 36 36 H 1.07999 * 118.17544 * 0.87140 * 11 10 9 37 37 H 1.08993 * 109.52463 * 108.91958 * 12 11 10 38 38 H 1.08998 * 109.51662 * 229.11096 * 12 11 10 39 39 H 0.96998 * 120.00224 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.77864 * 57.80878 * 22 13 12 41 41 H 1.08999 * 109.77691 * 178.61148 * 22 13 12 42 42 H 1.08998 * 109.31561 * 281.29253 * 23 10 9 43 43 H 1.08991 * 109.31460 * 40.72321 * 23 10 9 44 44 H 1.07994 * 120.88171 * 180.29493 * 24 5 4 45 45 H 1.07998 * 121.03171 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2214 1.9718 -1.1218 5 6 2.6637 3.2070 -1.1943 6 6 2.8854 3.8341 -2.5152 7 8 3.2899 4.9783 -2.5845 8 7 2.6389 3.1371 -3.6420 9 6 2.8580 3.7585 -4.9505 10 6 2.5099 2.7752 -6.0381 11 6 1.3184 2.8314 -6.5410 12 6 0.8236 1.9049 -7.6165 13 7 1.9593 1.1458 -8.1596 14 6 2.1020 0.9419 -9.5061 15 1 3.0789 0.7441 -9.9219 16 6 0.9909 0.9894 -10.3368 17 7 -0.2189 0.9240 -9.8222 18 14 1.2124 1.1461 -12.1850 19 1 2.6610 1.1995 -12.5071 20 1 0.5990 -0.0268 -12.8583 21 1 0.5533 2.3895 -12.6588 22 6 2.9381 0.6139 -7.1952 23 6 3.5702 1.8047 -6.4658 24 6 2.9234 3.9414 -0.0120 25 6 2.7074 3.3303 1.1873 26 6 2.2365 1.9985 1.1762 27 8 2.0287 1.4119 2.2253 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.3158 2.2241 -3.5867 34 1 3.9044 4.0490 -5.0441 35 1 2.2260 4.6417 -5.0437 36 1 0.6422 3.5861 -6.1673 37 1 0.0926 1.2150 -7.1950 38 1 0.3599 2.4864 -8.4132 39 1 -0.9953 0.9575 -10.4026 40 1 2.4350 -0.0368 -6.4800 41 1 3.7102 0.0548 -7.7238 42 1 4.2725 2.3078 -7.1305 43 1 4.1048 1.4444 -5.5870 44 1 3.2826 4.9587 -0.0591 45 1 2.8902 3.8484 2.1171 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001271959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:36 Heat of formation + Delta-G solvation = 16.275248 kcal Electronic energy + Delta-G solvation = -27935.994358 eV Core-core repulsion = 23955.276512 eV Total energy + Delta-G solvation = -3980.717846 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.30558 -40.88142 -39.37435 -38.87547 -36.62571 -36.31697 -34.61208 -33.17608 -32.62840 -31.73861 -31.33909 -28.67490 -27.12802 -26.12203 -25.43014 -24.36168 -23.68678 -22.87541 -22.21868 -20.04494 -19.44868 -19.20490 -18.06002 -17.75751 -17.41823 -17.12385 -17.02854 -16.82714 -16.28982 -15.87789 -15.46038 -15.25297 -15.20725 -15.07631 -14.75265 -14.58275 -14.46008 -14.28850 -13.93673 -13.71766 -13.45904 -13.24195 -13.16083 -12.90547 -12.82131 -12.76880 -12.59185 -12.23509 -12.18550 -12.07325 -11.68338 -11.55436 -11.50286 -11.21702 -10.96472 -10.67862 -10.20172 -9.74212 -9.63390 -8.72917 -7.86993 -5.27823 -0.69075 -0.04261 0.94349 1.18897 1.47325 1.49790 1.59349 1.63124 2.18797 2.38857 2.52430 2.79861 3.30359 3.53359 3.61482 3.65218 3.71245 3.90114 3.99711 4.00376 4.01419 4.25094 4.45527 4.48068 4.49937 4.57618 4.67089 4.73552 4.78229 4.83958 4.86330 4.88790 4.95378 4.97630 5.13266 5.13792 5.24402 5.29193 5.43237 5.51783 5.63738 5.79709 6.19852 6.28084 6.35788 6.41014 6.79408 7.01475 7.15582 7.85823 8.38995 9.21495 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019373 B = 0.002431 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.962125 B =11516.512388 C =12397.011899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.096 3.904 3 N -0.331 5.331 4 N -0.176 5.176 5 C 0.013 3.987 6 C 0.590 3.410 7 O -0.555 6.555 8 N -0.695 5.695 9 C 0.165 3.835 10 C -0.140 4.140 11 C -0.140 4.140 12 C 0.204 3.796 13 N -0.615 5.615 14 C -0.254 4.254 15 H 0.070 0.930 16 C -0.054 4.054 17 N -0.939 5.939 18 Si 0.965 3.035 19 H -0.267 1.267 20 H -0.293 1.293 21 H -0.292 1.292 22 C 0.138 3.862 23 C -0.084 4.084 24 C -0.024 4.024 25 C -0.189 4.189 26 C 0.470 3.530 27 O -0.558 6.558 28 H 0.103 0.897 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.124 0.876 32 H 0.110 0.890 33 H 0.416 0.584 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.014 0.986 38 H 0.056 0.944 39 H 0.249 0.751 40 H 0.028 0.972 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.182 0.818 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.645 2.775 21.105 22.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.022 4.022 3 N -0.153 5.153 4 N -0.007 5.007 5 C -0.158 4.158 6 C 0.374 3.626 7 O -0.432 6.432 8 N -0.345 5.345 9 C 0.043 3.957 10 C -0.141 4.141 11 C -0.161 4.161 12 C 0.079 3.921 13 N -0.340 5.340 14 C -0.384 4.384 15 H 0.088 0.912 16 C -0.249 4.249 17 N -0.586 5.586 18 Si 0.794 3.206 19 H -0.192 1.192 20 H -0.221 1.221 21 H -0.219 1.219 22 C 0.013 3.987 23 C -0.123 4.123 24 C -0.047 4.047 25 C -0.219 4.219 26 C 0.270 3.730 27 O -0.438 6.438 28 H 0.122 0.878 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.128 0.872 33 H 0.252 0.748 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.132 0.868 37 H 0.031 0.969 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.046 0.954 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.199 0.801 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 5.436 2.492 21.031 21.865 hybrid contribution -0.445 0.103 -0.611 0.763 sum 4.992 2.595 20.420 21.181 Atomic orbital electron populations 1.22095 0.92996 1.04939 1.02120 1.22379 0.96611 0.76401 1.06816 1.47168 1.50328 1.15598 1.02181 1.71065 1.06133 1.10639 1.12861 1.21687 1.07067 0.90985 0.96081 1.17321 0.77702 0.84963 0.82646 1.90820 1.47696 1.17903 1.86802 1.45939 1.65590 1.18201 1.04810 1.20389 1.02085 0.94011 0.79239 1.20599 0.95624 0.99429 0.98447 1.22966 0.96981 0.98781 0.97322 1.19404 0.88662 0.91264 0.92735 1.44423 1.26578 1.60677 1.02276 1.19536 0.92763 1.42546 0.83533 0.91216 1.25711 0.95237 1.01912 1.02047 1.70169 0.97513 1.55923 1.34985 0.85226 0.77810 0.76726 0.80824 1.19164 1.22052 1.21882 1.21183 0.91903 0.94087 0.91535 1.20726 0.96076 0.95575 0.99933 1.22364 0.90689 1.02174 0.89451 1.22885 1.04236 0.93266 1.01484 1.18515 0.80831 0.89774 0.83848 1.90959 1.54595 1.67934 1.30360 0.87805 0.93284 0.91986 0.85764 0.87164 0.74751 0.90204 0.90990 0.86765 0.96875 0.92566 0.94184 0.95381 0.92395 0.91638 0.89384 0.80115 0.79158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 10.24 71.98 0.74 -1.39 16 2 C 0.10 1.31 6.27 86.38 0.54 1.85 16 3 N -0.33 -5.95 3.22 -472.48 -1.52 -7.47 16 4 N -0.18 -3.18 10.11 -48.19 -0.49 -3.66 16 5 C 0.01 0.23 6.84 42.59 0.29 0.52 16 6 C 0.59 13.00 7.81 86.80 0.68 13.68 16 7 O -0.56 -15.01 16.38 -3.89 -0.06 -15.07 16 8 N -0.69 -14.83 5.54 -469.67 -2.60 -17.43 16 9 C 0.17 3.98 5.66 85.63 0.48 4.47 16 10 C -0.14 -4.14 5.22 -15.14 -0.08 -4.22 16 11 C -0.14 -4.88 9.47 27.11 0.26 -4.63 16 12 C 0.20 9.48 5.23 85.42 0.45 9.92 16 13 N -0.62 -29.70 3.01 -703.04 -2.11 -31.81 16 14 C -0.25 -13.60 9.71 84.03 0.82 -12.78 16 15 H 0.07 3.64 7.88 -2.91 -0.02 3.61 16 16 C -0.05 -2.98 5.01 84.86 0.43 -2.55 16 17 N -0.94 -54.33 11.08 21.65 0.24 -54.09 16 18 Si 0.97 44.25 29.58 68.60 2.03 46.28 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 22 C 0.14 5.23 6.59 86.31 0.57 5.80 16 23 C -0.08 -2.52 5.95 29.72 0.18 -2.34 16 24 C -0.02 -0.35 9.68 22.65 0.22 -0.13 16 25 C -0.19 -2.87 10.11 22.57 0.23 -2.64 16 26 C 0.47 9.61 7.47 85.01 0.63 10.25 16 27 O -0.56 -14.52 16.62 -5.25 -0.09 -14.61 16 28 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.11 1.49 7.36 -2.39 -0.02 1.47 16 33 H 0.42 8.19 7.80 -92.70 -0.72 7.47 16 34 H 0.08 1.87 8.11 -2.38 -0.02 1.85 16 35 H 0.07 1.78 7.78 -2.39 -0.02 1.76 16 36 H 0.11 3.51 7.73 -2.91 -0.02 3.49 16 37 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.06 2.99 6.41 -2.39 -0.02 2.97 16 39 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 40 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 2.15 7.96 -2.39 -0.02 2.13 16 42 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.18 2.05 7.72 -2.91 -0.02 2.03 16 45 H 0.19 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -69.15 378.33 2.11 -67.04 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.29 Total: 15.00 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 6.42 Total: 15.82 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -6.48 Total: -114.46 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.15 Total: -29.68 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -69.15 2.11 -67.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001271959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.314 kcal (2) G-P(sol) polarization free energy of solvation -69.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds