Wall clock time and date at job start Tue Mar 31 2020 18:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 O 1.21273 * 119.99691 * 2 1 4 4 N 1.34770 * 120.00073 * 179.97438 * 2 1 3 5 5 C 1.39275 * 119.99762 * 175.42770 * 4 2 1 6 6 C 1.39481 * 120.55890 * 35.05911 * 5 4 2 7 7 C 1.38268 * 118.43013 * 179.97438 * 6 5 4 8 8 C 1.38783 * 119.45626 * 0.02562 * 7 6 5 9 9 N 1.31379 * 121.10261 * 359.97438 * 8 7 6 10 10 C 1.32850 * 121.70620 * 359.77336 * 9 8 7 11 11 C 1.47812 * 119.78927 * 180.24680 * 10 9 8 12 12 O 1.21561 * 119.99803 * 185.59933 * 11 10 9 13 13 N 1.34782 * 120.00397 * 5.59155 * 11 10 9 14 14 C 1.46496 * 120.00164 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47121 * 180.02562 * 14 13 11 16 16 H 1.08991 * 110.64546 * 305.70319 * 15 14 13 17 17 C 1.55157 * 110.72002 * 182.55977 * 15 14 13 18 18 C 1.54907 * 101.58105 * 206.13879 * 17 15 14 19 19 N 1.47419 * 104.83520 * 37.00959 * 18 17 15 20 20 C 1.36939 * 125.65150 * 155.90336 * 19 18 17 21 21 H 1.07998 * 119.99874 * 179.97438 * 20 19 18 22 22 C 1.38804 * 119.99713 * 359.97438 * 20 19 18 23 23 N 1.31616 * 120.00367 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 120.00043 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47074 * 89.99633 * 24 22 20 26 26 H 1.48505 * 109.47055 * 209.99856 * 24 22 20 27 27 H 1.48501 * 109.46733 * 329.99733 * 24 22 20 28 28 C 1.47323 * 108.73568 * 335.71622 * 19 18 17 29 29 H 1.08996 * 109.46900 * 90.00228 * 1 2 3 30 30 H 1.08994 * 109.47081 * 330.00003 * 1 2 3 31 31 H 1.08996 * 109.46618 * 209.99987 * 1 2 3 32 32 H 0.96999 * 119.99952 * 355.42646 * 4 2 1 33 33 H 1.08007 * 120.78388 * 0.02562 * 6 5 4 34 34 H 1.07995 * 120.27009 * 180.02562 * 7 6 5 35 35 H 1.08004 * 119.44757 * 180.02562 * 8 7 6 36 36 H 0.96997 * 119.99949 * 0.02562 * 13 11 10 37 37 H 1.08996 * 109.47272 * 300.00492 * 14 13 11 38 38 H 1.09003 * 109.47205 * 60.00143 * 14 13 11 39 39 H 1.09008 * 111.00584 * 324.21269 * 17 15 14 40 40 H 1.08998 * 111.00350 * 88.02774 * 17 15 14 41 41 H 1.09004 * 110.37009 * 155.84860 * 18 17 15 42 42 H 1.09001 * 110.36664 * 278.05737 * 18 17 15 43 43 H 0.97004 * 120.00523 * 179.97438 * 23 22 20 44 44 H 1.08995 * 110.06409 * 241.86804 * 28 19 18 45 45 H 1.09007 * 109.84775 * 120.61065 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.5704 -1.1690 -0.0956 6 6 4.3241 -0.1598 0.5035 7 6 5.7006 -0.2052 0.3809 8 6 6.2887 -1.2430 -0.3284 9 7 5.5595 -2.1835 -0.8850 10 6 4.2343 -2.1868 -0.7912 11 6 3.4556 -3.2690 -1.4294 12 8 2.2409 -3.2224 -1.4339 13 7 4.0923 -4.3074 -2.0064 14 6 3.3206 -5.3797 -2.6394 15 6 4.2776 -6.4269 -3.2125 16 1 5.0011 -5.9611 -3.8814 17 6 3.4917 -7.5452 -3.9468 18 6 4.4676 -8.7421 -3.8256 19 7 5.0711 -8.6030 -2.4878 20 6 5.6168 -9.6187 -1.7489 21 1 6.0362 -9.4129 -0.7751 22 6 5.6308 -10.9125 -2.2514 23 7 5.1192 -11.1633 -3.4378 24 14 6.3744 -12.2981 -1.2431 25 1 5.3240 -12.9070 -0.3881 26 1 6.9306 -13.3302 -2.1546 27 1 7.4599 -11.7586 -0.3852 28 6 4.9945 -7.1899 -2.0786 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 0.8899 0.5138 31 1 -0.3632 -0.8900 0.5138 32 1 1.6983 -2.0058 0.0679 33 1 3.8438 0.6378 1.0510 34 1 6.3129 0.5607 0.8333 35 1 7.3639 -1.2785 -0.4238 36 1 5.0616 -4.3447 -2.0026 37 1 2.6725 -5.8472 -1.8982 38 1 2.7126 -4.9641 -3.4431 39 1 2.5493 -7.7569 -3.4415 40 1 3.3224 -7.2826 -4.9910 41 1 3.9241 -9.6840 -3.9005 42 1 5.2351 -8.6855 -4.5976 43 1 5.1293 -12.0674 -3.7892 44 1 5.9971 -6.7867 -1.9367 45 1 4.4234 -7.1027 -1.1542 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028587071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:38 Heat of formation + Delta-G solvation = -4.175786 kcal Electronic energy + Delta-G solvation = -27888.724144 eV Core-core repulsion = 23907.119475 eV Total energy + Delta-G solvation = -3981.604669 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.44480 -39.75451 -39.05831 -37.63304 -35.56928 -34.56432 -32.88852 -32.33021 -31.43185 -29.86384 -29.22533 -28.20873 -25.83174 -24.80110 -24.00082 -23.13496 -21.22234 -20.78585 -20.07697 -19.72992 -18.27939 -18.09642 -17.41698 -16.85456 -16.64427 -15.87222 -15.73873 -15.43807 -15.16351 -14.93763 -14.61608 -14.47489 -13.93837 -13.79538 -13.61478 -13.42076 -13.10184 -12.86042 -12.82027 -12.61322 -12.50545 -11.79171 -11.71512 -11.50804 -11.28073 -10.95787 -10.80321 -10.65138 -10.51245 -10.29865 -10.12743 -10.06369 -10.00305 -9.81507 -9.63882 -9.50355 -9.08332 -8.65150 -8.64360 -6.83433 -5.65458 -3.07021 0.31103 0.85229 2.18374 2.55016 2.75270 3.03350 3.39843 3.44753 3.46777 3.59204 3.95672 4.31187 4.47332 4.50537 4.54863 4.67680 4.81912 4.96523 5.02774 5.07017 5.12443 5.24150 5.40151 5.45235 5.51908 5.57451 5.67858 5.76388 5.84970 5.88117 6.03402 6.08083 6.31770 6.33882 6.38242 6.56328 6.57626 6.71476 6.90484 7.02165 7.30118 7.51299 7.59290 7.62495 7.69195 7.85305 8.07419 8.36279 9.22224 9.82935 10.47885 11.38566 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018864 B = 0.002348 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.984751 B =11923.818975 C =12603.643541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.514 3.486 3 O -0.535 6.535 4 N -0.653 5.653 5 C 0.158 3.842 6 C -0.091 4.091 7 C -0.129 4.129 8 C 0.082 3.918 9 N -0.437 5.437 10 C 0.046 3.954 11 C 0.573 3.427 12 O -0.548 6.548 13 N -0.697 5.697 14 C 0.130 3.870 15 C -0.115 4.115 16 H 0.077 0.923 17 C -0.134 4.134 18 C 0.152 3.848 19 N -0.605 5.605 20 C -0.222 4.222 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.923 5.923 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.141 3.859 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.427 0.573 33 H 0.156 0.844 34 H 0.144 0.856 35 H 0.166 0.834 36 H 0.414 0.586 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.107 0.893 42 H 0.012 0.988 43 H 0.252 0.748 44 H 0.020 0.980 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.074 23.084 6.190 24.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.303 3.697 3 O -0.412 6.412 4 N -0.303 5.303 5 C 0.058 3.942 6 C -0.119 4.119 7 C -0.150 4.150 8 C -0.080 4.080 9 N -0.148 5.148 10 C -0.094 4.094 11 C 0.358 3.642 12 O -0.427 6.427 13 N -0.347 5.347 14 C 0.007 3.993 15 C -0.135 4.135 16 H 0.096 0.904 17 C -0.174 4.174 18 C 0.027 3.973 19 N -0.331 5.331 20 C -0.350 4.350 21 H 0.095 0.905 22 C -0.207 4.207 23 N -0.572 5.572 24 Si 0.745 3.255 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.208 1.208 28 C 0.015 3.985 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.104 0.896 32 H 0.271 0.729 33 H 0.173 0.827 34 H 0.162 0.838 35 H 0.183 0.817 36 H 0.250 0.750 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.125 0.875 42 H 0.030 0.970 43 H 0.063 0.937 44 H 0.038 0.962 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.200 22.874 5.662 24.131 hybrid contribution 0.446 -0.408 0.927 1.107 sum -4.754 22.466 6.589 23.890 Atomic orbital electron populations 1.21865 0.90174 1.05267 1.05540 1.21142 0.91281 0.82801 0.74487 1.90699 1.70604 1.31445 1.48452 1.43838 1.04315 1.11538 1.70644 1.18614 0.84595 0.95856 0.95169 1.21791 0.93614 0.98667 0.97820 1.22325 0.94875 0.99227 0.98583 1.22796 1.00498 0.89977 0.94711 1.67560 1.04741 1.25381 1.17096 1.21037 0.90591 0.97441 1.00351 1.17701 0.86574 0.81433 0.78457 1.90620 1.13103 1.78380 1.60601 1.45928 1.11725 1.21398 1.55621 1.21570 0.94095 0.86574 0.97067 1.22453 0.97556 0.95013 0.98436 0.90446 1.23004 0.99404 0.96563 0.98396 1.21927 0.92962 0.96641 0.85758 1.44578 1.69692 1.01621 1.17195 1.19079 1.30819 0.86409 0.98691 0.90545 1.24784 1.01535 0.97409 0.97020 1.69791 1.50725 1.19406 1.17249 0.86074 0.78632 0.81937 0.78868 1.21600 1.21649 1.20756 1.21387 0.96483 0.86252 0.94398 0.88123 0.88457 0.89586 0.72948 0.82692 0.83804 0.81663 0.74999 0.90868 0.91320 0.91831 0.92097 0.87514 0.97012 0.93734 0.96167 0.95791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.31 36.01 0.37 -0.63 16 2 C 0.51 5.15 7.79 -10.98 -0.09 5.07 16 3 O -0.54 -6.90 14.58 5.56 0.08 -6.82 16 4 N -0.65 -6.89 4.56 -9.60 -0.04 -6.94 16 5 C 0.16 1.85 6.32 -83.35 -0.53 1.33 16 6 C -0.09 -0.93 8.80 -39.11 -0.34 -1.27 16 7 C -0.13 -1.04 10.10 -39.37 -0.40 -1.44 16 8 C 0.08 0.73 11.17 -17.54 -0.20 0.53 16 9 N -0.44 -5.12 9.55 -9.68 -0.09 -5.21 16 10 C 0.05 0.58 6.76 -82.85 -0.56 0.02 16 11 C 0.57 7.96 7.78 -12.34 -0.10 7.86 16 12 O -0.55 -8.13 13.95 5.31 0.07 -8.05 16 13 N -0.70 -9.49 5.42 -61.26 -0.33 -9.82 16 14 C 0.13 1.87 5.00 -4.04 -0.02 1.85 16 15 C -0.12 -1.91 2.98 -88.78 -0.26 -2.17 16 16 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 17 C -0.13 -2.45 6.54 -24.58 -0.16 -2.61 16 18 C 0.15 3.64 5.89 -2.53 -0.01 3.63 16 19 N -0.60 -15.41 3.40 -169.83 -0.58 -15.99 16 20 C -0.22 -6.18 10.28 -15.06 -0.15 -6.34 16 21 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 22 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 23 N -0.92 -26.85 10.09 55.49 0.56 -26.29 16 24 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.14 2.87 6.67 -2.90 -0.02 2.85 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.43 4.30 6.55 -40.82 -0.27 4.03 16 33 H 0.16 1.57 6.33 -52.48 -0.33 1.23 16 34 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 35 H 0.17 0.97 8.06 -52.48 -0.42 0.54 16 36 H 0.41 5.41 7.74 -40.82 -0.32 5.10 16 37 H 0.07 1.13 8.00 -51.93 -0.42 0.71 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 1.14 8.05 -51.92 -0.42 0.73 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.11 2.89 5.87 -51.93 -0.30 2.58 16 42 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.02 0.50 7.73 -51.93 -0.40 0.09 16 LS Contribution 371.93 15.07 5.60 5.60 Total: -1.00 -33.56 371.93 -8.54 -42.10 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.23 Total: 6.14 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: -2.56 Total: 8.24 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: -0.49 Total: -64.26 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.16 Total: -14.87 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.56 -8.54 -42.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028587071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.928 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds