Wall clock time and date at job start Tue Mar 31 2020 18:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 O 1.21273 * 119.99691 * 2 1 4 4 N 1.34770 * 120.00073 * 179.97438 * 2 1 3 5 5 C 1.39275 * 119.99762 * 175.42770 * 4 2 1 6 6 C 1.39481 * 120.55890 * 35.05911 * 5 4 2 7 7 C 1.38268 * 118.43013 * 179.97438 * 6 5 4 8 8 C 1.38783 * 119.45626 * 0.02562 * 7 6 5 9 9 N 1.31379 * 121.10261 * 359.97438 * 8 7 6 10 10 C 1.32850 * 121.70620 * 359.77336 * 9 8 7 11 11 C 1.47812 * 119.78927 * 180.24680 * 10 9 8 12 12 O 1.21561 * 119.99803 * 185.59933 * 11 10 9 13 13 N 1.34782 * 120.00397 * 5.59155 * 11 10 9 14 14 C 1.46496 * 120.00164 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47121 * 180.02562 * 14 13 11 16 16 H 1.08991 * 110.64546 * 305.70319 * 15 14 13 17 17 C 1.55157 * 110.72002 * 182.55977 * 15 14 13 18 18 C 1.54907 * 101.58105 * 206.13879 * 17 15 14 19 19 N 1.47419 * 104.83520 * 37.00959 * 18 17 15 20 20 C 1.36939 * 125.65150 * 155.90336 * 19 18 17 21 21 H 1.07998 * 119.99874 * 179.97438 * 20 19 18 22 22 C 1.38804 * 119.99713 * 359.97438 * 20 19 18 23 23 N 1.31616 * 120.00367 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 120.00043 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47074 * 89.99633 * 24 22 20 26 26 H 1.48505 * 109.47055 * 209.99856 * 24 22 20 27 27 H 1.48501 * 109.46733 * 329.99733 * 24 22 20 28 28 C 1.47323 * 108.73568 * 335.71622 * 19 18 17 29 29 H 1.08996 * 109.46900 * 90.00228 * 1 2 3 30 30 H 1.08994 * 109.47081 * 330.00003 * 1 2 3 31 31 H 1.08996 * 109.46618 * 209.99987 * 1 2 3 32 32 H 0.96999 * 119.99952 * 355.42646 * 4 2 1 33 33 H 1.08007 * 120.78388 * 0.02562 * 6 5 4 34 34 H 1.07995 * 120.27009 * 180.02562 * 7 6 5 35 35 H 1.08004 * 119.44757 * 180.02562 * 8 7 6 36 36 H 0.96997 * 119.99949 * 0.02562 * 13 11 10 37 37 H 1.08996 * 109.47272 * 300.00492 * 14 13 11 38 38 H 1.09003 * 109.47205 * 60.00143 * 14 13 11 39 39 H 1.09008 * 111.00584 * 324.21269 * 17 15 14 40 40 H 1.08998 * 111.00350 * 88.02774 * 17 15 14 41 41 H 1.09004 * 110.37009 * 155.84860 * 18 17 15 42 42 H 1.09001 * 110.36664 * 278.05737 * 18 17 15 43 43 H 0.97004 * 120.00523 * 179.97438 * 23 22 20 44 44 H 1.08995 * 110.06409 * 241.86804 * 28 19 18 45 45 H 1.09007 * 109.84775 * 120.61065 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.5704 -1.1690 -0.0956 6 6 4.3241 -0.1598 0.5035 7 6 5.7006 -0.2052 0.3809 8 6 6.2887 -1.2430 -0.3284 9 7 5.5595 -2.1835 -0.8850 10 6 4.2343 -2.1868 -0.7912 11 6 3.4556 -3.2690 -1.4294 12 8 2.2409 -3.2224 -1.4339 13 7 4.0923 -4.3074 -2.0064 14 6 3.3206 -5.3797 -2.6394 15 6 4.2776 -6.4269 -3.2125 16 1 5.0011 -5.9611 -3.8814 17 6 3.4917 -7.5452 -3.9468 18 6 4.4676 -8.7421 -3.8256 19 7 5.0711 -8.6030 -2.4878 20 6 5.6168 -9.6187 -1.7489 21 1 6.0362 -9.4129 -0.7751 22 6 5.6308 -10.9125 -2.2514 23 7 5.1192 -11.1633 -3.4378 24 14 6.3744 -12.2981 -1.2431 25 1 5.3240 -12.9070 -0.3881 26 1 6.9306 -13.3302 -2.1546 27 1 7.4599 -11.7586 -0.3852 28 6 4.9945 -7.1899 -2.0786 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 0.8899 0.5138 31 1 -0.3632 -0.8900 0.5138 32 1 1.6983 -2.0058 0.0679 33 1 3.8438 0.6378 1.0510 34 1 6.3129 0.5607 0.8333 35 1 7.3639 -1.2785 -0.4238 36 1 5.0616 -4.3447 -2.0026 37 1 2.6725 -5.8472 -1.8982 38 1 2.7126 -4.9641 -3.4431 39 1 2.5493 -7.7569 -3.4415 40 1 3.3224 -7.2826 -4.9910 41 1 3.9241 -9.6840 -3.9005 42 1 5.2351 -8.6855 -4.5976 43 1 5.1293 -12.0674 -3.7892 44 1 5.9971 -6.7867 -1.9367 45 1 4.4234 -7.1027 -1.1542 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028587071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:37 Heat of formation + Delta-G solvation = -27.820200 kcal Electronic energy + Delta-G solvation = -27889.749443 eV Core-core repulsion = 23907.119475 eV Total energy + Delta-G solvation = -3982.629968 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.26795 -40.68496 -39.99651 -39.16555 -36.53652 -35.79561 -34.36451 -33.41879 -32.20521 -31.53648 -30.11917 -29.60917 -27.41678 -26.05191 -25.03014 -24.26529 -22.36674 -21.82464 -21.48438 -21.18171 -19.22223 -19.02975 -18.71071 -18.18213 -17.58752 -17.10103 -16.71532 -16.64285 -16.28871 -16.03810 -15.98055 -15.56477 -15.28025 -14.87672 -14.69705 -14.27911 -14.23051 -14.15392 -13.70687 -13.54079 -13.36946 -13.36470 -13.17583 -13.12852 -12.81799 -12.66141 -12.13160 -12.01527 -11.90273 -11.82977 -11.58833 -11.48328 -11.37366 -11.21143 -10.82250 -10.73579 -10.44778 -10.16371 -9.46767 -8.87618 -7.76967 -5.21095 -0.49946 0.09507 1.44100 1.46634 1.48432 1.57070 1.62547 1.97203 2.05214 2.49861 2.77907 3.11601 3.32392 3.60835 3.65224 3.67361 3.81529 3.86844 3.97874 3.99697 4.06861 4.20694 4.43111 4.45423 4.46857 4.59468 4.66083 4.69935 4.77377 4.85265 4.91930 5.01060 5.05205 5.06260 5.13834 5.17963 5.30877 5.39951 5.48170 5.61352 5.67175 5.83486 6.25460 6.32315 6.34597 6.73282 6.91175 7.06251 7.12045 7.79462 8.43022 9.24907 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018864 B = 0.002348 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.984751 B =11923.818975 C =12603.643541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.508 3.492 3 O -0.568 6.568 4 N -0.654 5.654 5 C 0.144 3.856 6 C -0.103 4.103 7 C -0.111 4.111 8 C 0.079 3.921 9 N -0.454 5.454 10 C 0.022 3.978 11 C 0.571 3.429 12 O -0.563 6.563 13 N -0.697 5.697 14 C 0.143 3.857 15 C -0.096 4.096 16 H 0.092 0.908 17 C -0.120 4.120 18 C 0.151 3.849 19 N -0.628 5.628 20 C -0.239 4.239 21 H 0.078 0.922 22 C -0.068 4.068 23 N -0.949 5.949 24 Si 0.979 3.021 25 H -0.285 1.285 26 H -0.293 1.293 27 H -0.271 1.271 28 C 0.138 3.862 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.428 0.572 33 H 0.154 0.846 34 H 0.182 0.818 35 H 0.199 0.801 36 H 0.416 0.584 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.072 0.928 42 H -0.011 1.011 43 H 0.247 0.753 44 H 0.024 0.976 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.751 24.852 6.989 26.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.299 3.701 3 O -0.448 6.448 4 N -0.303 5.303 5 C 0.043 3.957 6 C -0.131 4.131 7 C -0.131 4.131 8 C -0.083 4.083 9 N -0.166 5.166 10 C -0.117 4.117 11 C 0.357 3.643 12 O -0.443 6.443 13 N -0.346 5.346 14 C 0.019 3.981 15 C -0.115 4.115 16 H 0.110 0.890 17 C -0.159 4.159 18 C 0.027 3.973 19 N -0.354 5.354 20 C -0.368 4.368 21 H 0.096 0.904 22 C -0.260 4.260 23 N -0.599 5.599 24 Si 0.808 3.192 25 H -0.212 1.212 26 H -0.220 1.220 27 H -0.196 1.196 28 C 0.013 3.987 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.271 0.729 33 H 0.171 0.829 34 H 0.199 0.801 35 H 0.216 0.784 36 H 0.253 0.747 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.007 0.993 43 H 0.057 0.943 44 H 0.042 0.958 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.891 24.661 6.473 25.961 hybrid contribution 0.419 -0.878 0.727 1.214 sum -4.472 23.783 7.200 25.248 Atomic orbital electron populations 1.21925 0.87002 1.06784 1.06479 1.21889 0.92777 0.82048 0.73352 1.90673 1.71596 1.32396 1.50088 1.43928 1.04147 1.11799 1.70413 1.18855 0.85286 0.96142 0.95401 1.21940 0.94670 0.98346 0.98161 1.22741 0.94227 0.99269 0.96851 1.23423 1.01841 0.89278 0.93719 1.67538 1.04460 1.26665 1.17891 1.20844 0.91149 0.97754 1.01938 1.17937 0.86573 0.81606 0.78167 1.90599 1.13720 1.78792 1.61176 1.45838 1.11763 1.21220 1.55805 1.21339 0.93343 0.86197 0.97178 1.22286 0.97562 0.94637 0.97007 0.89009 1.22839 0.98013 0.94449 1.00590 1.21736 0.93062 0.97737 0.84810 1.44904 1.69670 1.03314 1.17560 1.19443 1.30702 0.87518 0.99114 0.90376 1.25624 1.02463 0.99720 0.98234 1.70049 1.51809 1.19392 1.18637 0.85062 0.78011 0.78756 0.77407 1.21224 1.21958 1.19587 1.21537 0.97126 0.84285 0.95736 0.87269 0.87326 0.87707 0.72880 0.82868 0.80092 0.78445 0.74697 0.91787 0.89960 0.91497 0.89174 0.90992 0.99342 0.94323 0.95784 0.95966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 10.31 71.24 0.73 -0.96 16 2 C 0.51 9.90 7.79 87.66 0.68 10.58 16 3 O -0.57 -14.49 14.58 -3.01 -0.04 -14.53 16 4 N -0.65 -13.55 4.56 -302.68 -1.38 -14.93 16 5 C 0.14 3.30 6.32 38.69 0.24 3.54 16 6 C -0.10 -1.98 8.80 22.58 0.20 -1.78 16 7 C -0.11 -1.49 10.10 22.41 0.23 -1.26 16 8 C 0.08 1.21 11.17 84.89 0.95 2.16 16 9 N -0.45 -10.00 9.55 -184.53 -1.76 -11.76 16 10 C 0.02 0.54 6.76 41.95 0.28 0.83 16 11 C 0.57 15.46 7.78 86.78 0.68 16.13 16 12 O -0.56 -16.33 13.95 -3.91 -0.05 -16.39 16 13 N -0.70 -18.13 5.42 -466.00 -2.52 -20.65 16 14 C 0.14 3.88 5.00 86.38 0.43 4.31 16 15 C -0.10 -3.02 2.98 -9.60 -0.03 -3.05 16 16 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 17 C -0.12 -4.23 6.54 31.99 0.21 -4.03 16 18 C 0.15 7.40 5.89 86.86 0.51 7.91 16 19 N -0.63 -32.42 3.40 -691.24 -2.35 -34.77 16 20 C -0.24 -13.50 10.28 84.03 0.86 -12.64 16 21 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 22 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 23 N -0.95 -56.75 10.09 21.65 0.22 -56.53 16 24 Si 0.98 45.85 29.55 68.60 2.03 47.88 16 25 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 28 C 0.14 5.56 6.67 86.67 0.58 6.14 16 29 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.43 8.49 6.55 -92.71 -0.61 7.88 16 33 H 0.15 2.98 6.33 -2.91 -0.02 2.97 16 34 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.20 1.59 8.06 -2.91 -0.02 1.57 16 36 H 0.42 10.39 7.74 -92.71 -0.72 9.67 16 37 H 0.06 1.89 8.00 -2.39 -0.02 1.87 16 38 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.07 2.33 8.05 -2.38 -0.02 2.31 16 40 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.07 4.03 5.87 -2.38 -0.01 4.02 16 42 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 43 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 44 H 0.02 0.95 8.14 -2.39 -0.02 0.94 16 45 H 0.02 0.91 7.73 -2.38 -0.02 0.89 16 Total: -1.00 -74.73 371.93 0.87 -73.87 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -0.29 Total: 23.35 kcal Atomic # 6 Polarization: 17.45 SS G_CDS: 7.02 Total: 24.47 kcal Atomic # 7 Polarization: -130.84 SS G_CDS: -7.80 Total: -138.64 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.10 Total: -30.92 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -74.73 0.87 -73.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028587071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.045 kcal (2) G-P(sol) polarization free energy of solvation -74.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds