Wall clock time and date at job start Tue Mar 31 2020 18:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21279 * 119.99659 * 2 1 4 4 N 1.34774 * 120.00295 * 179.97438 * 2 1 3 5 5 C 1.39426 * 119.99851 * 185.44290 * 4 2 1 6 6 C 1.39013 * 119.63277 * 183.34229 * 5 4 2 7 7 C 1.39554 * 118.93973 * 180.27432 * 6 5 4 8 8 C 1.48160 * 120.89148 * 179.77522 * 7 6 5 9 9 O 1.21511 * 119.99676 * 27.59853 * 8 7 6 10 10 N 1.34771 * 119.99702 * 207.59741 * 8 7 6 11 11 C 1.46495 * 120.00537 * 5.58437 * 10 8 7 12 12 C 1.46508 * 119.99614 * 185.58506 * 10 8 7 13 13 C 1.53001 * 109.47062 * 83.76407 * 12 10 8 14 14 H 1.08999 * 113.04248 * 311.38933 * 13 12 10 15 15 C 1.53944 * 113.76593 * 179.63792 * 13 12 10 16 16 C 1.53947 * 86.28956 * 222.09163 * 15 13 12 17 17 N 1.47580 * 113.76827 * 83.14257 * 13 12 10 18 18 C 1.36940 * 134.49416 * 318.94096 * 17 13 12 19 19 H 1.08000 * 119.99611 * 328.62345 * 18 17 13 20 20 C 1.38808 * 119.99990 * 148.61810 * 18 17 13 21 21 N 1.31619 * 120.00163 * 175.77502 * 20 18 17 22 22 Si 1.86801 * 120.00087 * 355.77790 * 20 18 17 23 23 H 1.48501 * 109.47180 * 84.55428 * 22 20 18 24 24 H 1.48508 * 109.47196 * 204.55091 * 22 20 18 25 25 H 1.48492 * 109.47039 * 324.55088 * 22 20 18 26 26 C 1.39976 * 118.21800 * 359.49592 * 7 6 5 27 27 C 1.38006 * 119.16043 * 0.25699 * 26 7 6 28 28 N 1.31875 * 120.98904 * 359.97438 * 27 26 7 29 29 H 1.08999 * 109.46864 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47179 * 300.00081 * 1 2 3 31 31 H 1.08992 * 109.46912 * 60.00122 * 1 2 3 32 32 H 0.96999 * 120.00050 * 5.44566 * 4 2 1 33 33 H 1.08006 * 120.53196 * 0.04690 * 6 5 4 34 34 H 1.09004 * 109.47228 * 274.69235 * 11 10 8 35 35 H 1.09000 * 109.46968 * 34.68560 * 11 10 8 36 36 H 1.08997 * 109.47565 * 154.69262 * 11 10 8 37 37 H 1.08996 * 109.47074 * 323.76366 * 12 10 8 38 38 H 1.08994 * 109.46980 * 203.76605 * 12 10 8 39 39 H 1.08997 * 113.74210 * 336.43589 * 15 13 12 40 40 H 1.08998 * 113.74245 * 107.64387 * 15 13 12 41 41 H 1.09003 * 113.77168 * 137.90540 * 16 15 13 42 42 H 1.08993 * 113.77232 * 269.19246 * 16 15 13 43 43 H 0.96996 * 120.00753 * 180.02562 * 21 20 18 44 44 H 1.08003 * 120.42051 * 180.23412 * 26 7 6 45 45 H 1.07998 * 119.50531 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.5705 -1.1697 0.1151 6 6 4.2638 -2.3726 0.0447 7 6 5.6539 -2.3590 0.1669 8 6 6.4354 -3.6161 0.1034 9 8 6.0096 -4.5651 -0.5248 10 7 7.6185 -3.7070 0.7424 11 6 8.0748 -2.6096 1.5989 12 6 8.4485 -4.9034 0.5804 13 6 9.2832 -4.7761 -0.6956 14 1 8.6945 -4.4756 -1.5623 15 6 10.2030 -5.9823 -0.9581 16 6 11.2743 -4.9513 -1.3574 17 7 10.5236 -3.9960 -0.5195 18 6 10.8478 -2.8473 0.1517 19 1 10.1119 -2.0659 0.2715 20 6 12.1222 -2.6873 0.6782 21 7 12.4600 -1.5510 1.2502 22 14 13.3577 -4.0844 0.5748 23 1 14.0414 -4.0442 -0.7429 24 1 14.3626 -3.9378 1.6584 25 1 12.6516 -5.3819 0.7268 26 6 6.2906 -1.1252 0.3451 27 6 5.5278 0.0236 0.3987 28 7 4.2150 -0.0271 0.2842 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6993 -2.0053 -0.0788 33 1 3.7347 -3.3032 -0.0985 34 1 8.5845 -1.8620 0.9910 35 1 7.2167 -2.1529 2.0923 36 1 8.7625 -2.9970 2.3506 37 1 7.8084 -5.7827 0.5096 38 1 9.1113 -5.0048 1.4396 39 1 10.4516 -6.5482 -0.0604 40 1 9.8723 -6.6153 -1.7816 41 1 12.2694 -5.1819 -0.9768 42 1 11.2718 -4.7038 -2.4188 43 1 13.3506 -1.4390 1.6178 44 1 7.3652 -1.0730 0.4399 45 1 6.0132 0.9785 0.5365 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085881973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:56 Heat of formation + Delta-G solvation = 66.382631 kcal Electronic energy + Delta-G solvation = -28606.985057 eV Core-core repulsion = 24628.440030 eV Total energy + Delta-G solvation = -3978.545027 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.07333 -39.91640 -38.80777 -38.00137 -35.41330 -34.93214 -32.70108 -32.33490 -31.17812 -29.43692 -28.81644 -28.05243 -26.56131 -24.72077 -23.36241 -23.25462 -22.76192 -21.07513 -19.61297 -19.10277 -18.13136 -17.27528 -17.16250 -16.53114 -16.26738 -15.83494 -15.75120 -15.53238 -15.30870 -14.77926 -14.56631 -14.21109 -13.97008 -13.79662 -13.47045 -13.22807 -13.06188 -13.02840 -12.87149 -12.52738 -12.42600 -12.18478 -11.61528 -11.50649 -11.29817 -11.13519 -10.89856 -10.84581 -10.50138 -10.45751 -10.34912 -9.96137 -9.76287 -9.71074 -9.41852 -9.12817 -8.69932 -8.41314 -8.28629 -6.97346 -6.01364 -3.44917 0.81648 0.98280 2.40905 2.59125 3.01421 3.23106 3.30123 3.39219 3.42704 3.86737 4.16746 4.46264 4.47284 4.62458 4.65492 4.79051 4.85272 4.98189 5.02991 5.08666 5.21882 5.33059 5.42015 5.48569 5.57815 5.62348 5.66303 5.80627 5.92314 5.94259 6.02951 6.06709 6.08381 6.16735 6.31820 6.35268 6.40701 6.43051 6.57974 6.78416 6.93544 7.04927 7.40519 7.64072 7.77764 8.09488 8.27515 8.29521 8.62299 9.57598 10.33922 11.14179 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022188 B = 0.002839 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.662642 B = 9858.867267 C =10766.768641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.500 3.500 3 O -0.479 6.479 4 N -0.663 5.663 5 C 0.347 3.653 6 C -0.155 4.155 7 C -0.053 4.053 8 C 0.555 3.445 9 O -0.541 6.541 10 N -0.586 5.586 11 C 0.076 3.924 12 C 0.120 3.880 13 C 0.133 3.867 14 H 0.055 0.945 15 C -0.146 4.146 16 C 0.092 3.908 17 N -0.618 5.618 18 C -0.234 4.234 19 H 0.091 0.909 20 C 0.028 3.972 21 N -0.915 5.915 22 Si 0.898 3.102 23 H -0.288 1.288 24 H -0.304 1.304 25 H -0.268 1.268 26 C -0.177 4.177 27 C 0.127 3.873 28 N -0.467 5.467 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.417 0.583 33 H 0.143 0.857 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.047 0.953 42 H 0.041 0.959 43 H 0.264 0.736 44 H 0.162 0.838 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.833 -3.066 0.177 20.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.286 3.714 3 O -0.348 6.348 4 N -0.311 5.311 5 C 0.116 3.884 6 C -0.179 4.179 7 C -0.064 4.064 8 C 0.342 3.658 9 O -0.420 6.420 10 N -0.316 5.316 11 C -0.066 4.066 12 C -0.003 4.003 13 C 0.026 3.974 14 H 0.073 0.927 15 C -0.185 4.185 16 C -0.032 4.032 17 N -0.347 5.347 18 C -0.361 4.361 19 H 0.108 0.892 20 C -0.171 4.171 21 N -0.559 5.559 22 Si 0.730 3.270 23 H -0.215 1.215 24 H -0.232 1.232 25 H -0.194 1.194 26 C -0.198 4.198 27 C -0.030 4.030 28 N -0.182 5.182 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.254 0.746 33 H 0.161 0.839 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.179 0.821 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -19.982 -1.684 0.132 20.054 hybrid contribution 1.222 -1.739 -0.279 2.144 sum -18.761 -3.423 -0.147 19.071 Atomic orbital electron populations 1.21865 0.90827 1.04438 1.05655 1.21076 0.90629 0.83360 0.76348 1.90848 1.69947 1.30383 1.43624 1.43748 1.04031 1.10841 1.72451 1.18294 0.84749 0.89539 0.95814 1.21454 0.93718 0.97993 1.04703 1.20129 0.93355 0.94318 0.98630 1.18147 0.81109 0.86668 0.79884 1.90735 1.70026 1.38326 1.42923 1.47632 1.18137 1.19899 1.45936 1.22415 0.99335 0.90218 0.94631 1.21914 0.92436 0.86097 0.99828 1.22693 0.89625 0.89833 0.95229 0.92707 1.23569 0.97715 0.96320 1.00862 1.22931 0.95955 0.89516 0.94783 1.46274 1.05893 1.27846 1.54682 1.18655 0.99038 0.91888 1.26527 0.89207 1.25151 0.98265 0.96764 0.96924 1.69706 1.20529 1.24147 1.41483 0.86684 0.80586 0.83353 0.76374 1.21541 1.23232 1.19362 1.23097 1.03732 0.92202 1.00769 1.22702 0.87814 0.98681 0.93812 1.67458 1.10685 1.26672 1.13374 0.90424 0.88366 0.88443 0.74580 0.83901 0.90083 0.92127 0.89948 0.90479 0.89306 0.90228 0.92168 0.93564 0.94175 0.92607 0.82064 0.81628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.84 10.39 36.01 0.37 -0.47 16 2 C 0.50 5.19 7.89 -10.98 -0.09 5.10 16 3 O -0.48 -7.42 15.38 5.56 0.09 -7.33 16 4 N -0.66 -6.28 5.39 -11.44 -0.06 -6.35 16 5 C 0.35 4.52 7.42 -154.76 -1.15 3.37 16 6 C -0.15 -1.99 9.52 -38.80 -0.37 -2.36 16 7 C -0.05 -0.78 5.40 -104.68 -0.57 -1.34 16 8 C 0.55 9.29 7.44 -12.19 -0.09 9.20 16 9 O -0.54 -10.22 16.40 5.36 0.09 -10.13 16 10 N -0.59 -9.73 2.89 -182.58 -0.53 -10.26 16 11 C 0.08 1.18 7.76 59.84 0.46 1.64 16 12 C 0.12 2.06 5.30 -4.04 -0.02 2.04 16 13 C 0.13 2.55 4.50 -66.86 -0.30 2.24 16 14 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 15 C -0.15 -2.53 7.86 -25.80 -0.20 -2.73 16 16 C 0.09 1.91 7.41 -2.97 -0.02 1.89 16 17 N -0.62 -14.04 3.18 -170.74 -0.54 -14.58 16 18 C -0.23 -6.02 10.19 -15.06 -0.15 -6.17 16 19 H 0.09 2.37 5.40 -52.49 -0.28 2.09 16 20 C 0.03 0.77 5.50 -17.43 -0.10 0.68 16 21 N -0.92 -26.43 13.97 55.49 0.78 -25.65 16 22 Si 0.90 21.87 24.90 -169.99 -4.23 17.64 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 25 H -0.27 -6.21 6.38 56.52 0.36 -5.85 16 26 C -0.18 -2.44 7.83 -39.02 -0.31 -2.75 16 27 C 0.13 1.72 11.17 -17.62 -0.20 1.53 16 28 N -0.47 -7.04 7.87 -12.41 -0.10 -7.14 16 29 H 0.08 0.17 7.92 -51.93 -0.41 -0.24 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.42 2.21 8.54 -40.82 -0.35 1.87 16 33 H 0.14 1.58 7.96 -52.48 -0.42 1.16 16 34 H 0.08 1.40 4.11 -51.93 -0.21 1.19 16 35 H 0.06 0.79 6.21 -51.93 -0.32 0.47 16 36 H 0.08 1.34 7.79 -51.93 -0.40 0.93 16 37 H 0.08 1.24 7.54 -51.93 -0.39 0.85 16 38 H 0.09 1.55 7.78 -51.93 -0.40 1.14 16 39 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 1.01 3.54 -51.93 -0.18 0.82 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.16 2.25 4.62 -52.48 -0.24 2.00 16 45 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 362.73 15.07 5.47 5.47 Total: -1.00 -35.37 362.73 -7.52 -42.89 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.76 Total: 3.57 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: -2.72 Total: 11.87 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: -0.45 Total: -63.97 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: 0.17 Total: -17.46 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.23 Total: 17.64 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.37 -7.52 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085881973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.272 kcal (2) G-P(sol) polarization free energy of solvation -35.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds