Wall clock time and date at job start Tue Mar 31 2020 18:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21279 * 119.99659 * 2 1 4 4 N 1.34774 * 120.00295 * 179.97438 * 2 1 3 5 5 C 1.39426 * 119.99851 * 185.44290 * 4 2 1 6 6 C 1.39013 * 119.63277 * 183.34229 * 5 4 2 7 7 C 1.39554 * 118.93973 * 180.27432 * 6 5 4 8 8 C 1.48160 * 120.89148 * 179.77522 * 7 6 5 9 9 O 1.21511 * 119.99676 * 27.59853 * 8 7 6 10 10 N 1.34771 * 119.99702 * 207.59741 * 8 7 6 11 11 C 1.46495 * 120.00537 * 5.58437 * 10 8 7 12 12 C 1.46508 * 119.99614 * 185.58506 * 10 8 7 13 13 C 1.53001 * 109.47062 * 83.76407 * 12 10 8 14 14 H 1.08999 * 113.04248 * 311.38933 * 13 12 10 15 15 C 1.53944 * 113.76593 * 179.63792 * 13 12 10 16 16 C 1.53947 * 86.28956 * 222.09163 * 15 13 12 17 17 N 1.47580 * 113.76827 * 83.14257 * 13 12 10 18 18 C 1.36940 * 134.49416 * 318.94096 * 17 13 12 19 19 H 1.08000 * 119.99611 * 328.62345 * 18 17 13 20 20 C 1.38808 * 119.99990 * 148.61810 * 18 17 13 21 21 N 1.31619 * 120.00163 * 175.77502 * 20 18 17 22 22 Si 1.86801 * 120.00087 * 355.77790 * 20 18 17 23 23 H 1.48501 * 109.47180 * 84.55428 * 22 20 18 24 24 H 1.48508 * 109.47196 * 204.55091 * 22 20 18 25 25 H 1.48492 * 109.47039 * 324.55088 * 22 20 18 26 26 C 1.39976 * 118.21800 * 359.49592 * 7 6 5 27 27 C 1.38006 * 119.16043 * 0.25699 * 26 7 6 28 28 N 1.31875 * 120.98904 * 359.97438 * 27 26 7 29 29 H 1.08999 * 109.46864 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47179 * 300.00081 * 1 2 3 31 31 H 1.08992 * 109.46912 * 60.00122 * 1 2 3 32 32 H 0.96999 * 120.00050 * 5.44566 * 4 2 1 33 33 H 1.08006 * 120.53196 * 0.04690 * 6 5 4 34 34 H 1.09004 * 109.47228 * 274.69235 * 11 10 8 35 35 H 1.09000 * 109.46968 * 34.68560 * 11 10 8 36 36 H 1.08997 * 109.47565 * 154.69262 * 11 10 8 37 37 H 1.08996 * 109.47074 * 323.76366 * 12 10 8 38 38 H 1.08994 * 109.46980 * 203.76605 * 12 10 8 39 39 H 1.08997 * 113.74210 * 336.43589 * 15 13 12 40 40 H 1.08998 * 113.74245 * 107.64387 * 15 13 12 41 41 H 1.09003 * 113.77168 * 137.90540 * 16 15 13 42 42 H 1.08993 * 113.77232 * 269.19246 * 16 15 13 43 43 H 0.96996 * 120.00753 * 180.02562 * 21 20 18 44 44 H 1.08003 * 120.42051 * 180.23412 * 26 7 6 45 45 H 1.07998 * 119.50531 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.5705 -1.1697 0.1151 6 6 4.2638 -2.3726 0.0447 7 6 5.6539 -2.3590 0.1669 8 6 6.4354 -3.6161 0.1034 9 8 6.0096 -4.5651 -0.5248 10 7 7.6185 -3.7070 0.7424 11 6 8.0748 -2.6096 1.5989 12 6 8.4485 -4.9034 0.5804 13 6 9.2832 -4.7761 -0.6956 14 1 8.6945 -4.4756 -1.5623 15 6 10.2030 -5.9823 -0.9581 16 6 11.2743 -4.9513 -1.3574 17 7 10.5236 -3.9960 -0.5195 18 6 10.8478 -2.8473 0.1517 19 1 10.1119 -2.0659 0.2715 20 6 12.1222 -2.6873 0.6782 21 7 12.4600 -1.5510 1.2502 22 14 13.3577 -4.0844 0.5748 23 1 14.0414 -4.0442 -0.7429 24 1 14.3626 -3.9378 1.6584 25 1 12.6516 -5.3819 0.7268 26 6 6.2906 -1.1252 0.3451 27 6 5.5278 0.0236 0.3987 28 7 4.2150 -0.0271 0.2842 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6993 -2.0053 -0.0788 33 1 3.7347 -3.3032 -0.0985 34 1 8.5845 -1.8620 0.9910 35 1 7.2167 -2.1529 2.0923 36 1 8.7625 -2.9970 2.3506 37 1 7.8084 -5.7827 0.5096 38 1 9.1113 -5.0048 1.4396 39 1 10.4516 -6.5482 -0.0604 40 1 9.8723 -6.6153 -1.7816 41 1 12.2694 -5.1819 -0.9768 42 1 11.2718 -4.7038 -2.4188 43 1 13.3506 -1.4390 1.6178 44 1 7.3652 -1.0730 0.4399 45 1 6.0132 0.9785 0.5365 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085881973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:55 Heat of formation + Delta-G solvation = 41.606243 kcal Electronic energy + Delta-G solvation = -28608.059442 eV Core-core repulsion = 24628.440030 eV Total energy + Delta-G solvation = -3979.619411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.13336 -41.08589 -40.02470 -39.41931 -36.69041 -35.96558 -34.41085 -33.76412 -32.02533 -30.74396 -30.00372 -29.51655 -27.85665 -25.99579 -25.06877 -24.34501 -24.11199 -22.08512 -20.90946 -20.54359 -19.30977 -18.94362 -18.18683 -17.72582 -17.45807 -17.23597 -16.94835 -16.74819 -16.54074 -16.12111 -15.77421 -15.44824 -15.11928 -14.98437 -14.81898 -14.71877 -14.52311 -14.32589 -14.13429 -13.51139 -13.30170 -13.15155 -13.05462 -12.97964 -12.80634 -12.66592 -12.57874 -12.12157 -12.01370 -11.84368 -11.49610 -11.45790 -11.23422 -11.16754 -10.89821 -10.70086 -10.19216 -9.69127 -9.38579 -8.84293 -8.08177 -5.48182 -0.31813 -0.04342 1.35097 1.40815 1.50381 1.52798 1.73515 1.80839 2.03146 2.47595 2.79496 2.99376 3.18891 3.23905 3.39591 3.80223 3.80642 3.85053 3.93700 4.08164 4.20593 4.24395 4.35274 4.45559 4.51559 4.55027 4.57512 4.61215 4.67576 4.67947 4.70681 4.79141 4.88406 4.93997 4.99418 5.04236 5.07013 5.16599 5.38761 5.54314 5.61236 5.67225 6.19092 6.24183 6.32319 6.62861 6.86054 6.96384 7.26685 7.53847 8.41129 9.10411 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022188 B = 0.002839 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.662642 B = 9858.867267 C =10766.768641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.494 3.506 3 O -0.537 6.537 4 N -0.649 5.649 5 C 0.343 3.657 6 C -0.145 4.145 7 C -0.067 4.067 8 C 0.556 3.444 9 O -0.563 6.563 10 N -0.589 5.589 11 C 0.086 3.914 12 C 0.123 3.877 13 C 0.134 3.866 14 H 0.044 0.956 15 C -0.123 4.123 16 C 0.080 3.920 17 N -0.641 5.641 18 C -0.211 4.211 19 H 0.074 0.926 20 C -0.029 4.029 21 N -0.959 5.959 22 Si 0.947 3.053 23 H -0.292 1.292 24 H -0.316 1.316 25 H -0.247 1.247 26 C -0.178 4.178 27 C 0.124 3.876 28 N -0.494 5.494 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.438 0.562 33 H 0.164 0.836 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.038 0.962 42 H 0.048 0.952 43 H 0.259 0.741 44 H 0.156 0.844 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.170 -5.317 -0.283 22.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.283 3.717 3 O -0.410 6.410 4 N -0.299 5.299 5 C 0.111 3.889 6 C -0.168 4.168 7 C -0.079 4.079 8 C 0.345 3.655 9 O -0.443 6.443 10 N -0.319 5.319 11 C -0.056 4.056 12 C 0.000 4.000 13 C 0.027 3.973 14 H 0.062 0.938 15 C -0.162 4.162 16 C -0.044 4.044 17 N -0.370 5.370 18 C -0.339 4.339 19 H 0.092 0.908 20 C -0.224 4.224 21 N -0.606 5.606 22 Si 0.778 3.222 23 H -0.220 1.220 24 H -0.245 1.245 25 H -0.171 1.171 26 C -0.199 4.199 27 C -0.032 4.032 28 N -0.210 5.210 29 H 0.131 0.869 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.279 0.721 33 H 0.181 0.819 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.174 0.826 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -22.375 -4.010 -0.348 22.734 hybrid contribution 1.798 -1.014 -0.231 2.078 sum -20.577 -5.025 -0.578 21.189 Atomic orbital electron populations 1.21904 0.86225 1.07074 1.06382 1.22135 0.92670 0.82444 0.74418 1.90825 1.71507 1.32388 1.46318 1.43824 1.02675 1.12047 1.71374 1.18571 0.86294 0.89028 0.95001 1.21598 0.93010 0.98749 1.03490 1.20073 0.94128 0.93528 1.00132 1.18384 0.80959 0.86991 0.79169 1.90711 1.70552 1.39248 1.43818 1.47691 1.18193 1.19919 1.46055 1.22301 0.99915 0.89484 0.93889 1.21847 0.92564 0.86950 0.98642 1.22755 0.88910 0.89979 0.95632 0.93795 1.23442 0.94901 0.95400 1.02429 1.23131 0.96343 0.90081 0.94837 1.46562 1.07955 1.27376 1.55080 1.18692 0.98164 0.92359 1.24679 0.90817 1.25705 1.00147 0.98515 0.98000 1.69829 1.20708 1.26009 1.44087 0.85895 0.78620 0.82155 0.75509 1.21955 1.24466 1.17103 1.22999 1.03389 0.92262 1.01254 1.22943 0.87648 0.99247 0.93408 1.67522 1.11264 1.27941 1.14225 0.86880 0.87557 0.87555 0.72127 0.81859 0.92163 0.89747 0.90894 0.88812 0.89574 0.89059 0.88772 0.94410 0.93381 0.93199 0.82637 0.80153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 10.39 71.24 0.74 -0.36 16 2 C 0.49 9.48 7.89 87.66 0.69 10.17 16 3 O -0.54 -16.56 15.38 -3.03 -0.05 -16.61 16 4 N -0.65 -10.97 5.39 -308.50 -1.66 -12.63 16 5 C 0.34 8.51 7.42 132.93 0.99 9.50 16 6 C -0.14 -3.48 9.52 22.77 0.22 -3.27 16 7 C -0.07 -1.92 5.40 -19.90 -0.11 -2.03 16 8 C 0.56 18.06 7.44 86.88 0.65 18.71 16 9 O -0.56 -20.34 16.40 -3.75 -0.06 -20.41 16 10 N -0.59 -19.12 2.89 -849.85 -2.45 -21.58 16 11 C 0.09 2.69 7.76 127.77 0.99 3.68 16 12 C 0.12 4.02 5.30 86.38 0.46 4.47 16 13 C 0.13 4.85 4.50 45.09 0.20 5.05 16 14 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 15 C -0.12 -3.84 7.86 31.25 0.25 -3.59 16 16 C 0.08 3.13 7.41 86.48 0.64 3.77 16 17 N -0.64 -28.45 3.18 -694.08 -2.21 -30.66 16 18 C -0.21 -10.94 10.19 84.03 0.86 -10.08 16 19 H 0.07 4.02 5.40 -2.91 -0.02 4.00 16 20 C -0.03 -1.61 5.50 84.86 0.47 -1.14 16 21 N -0.96 -57.11 13.97 21.65 0.30 -56.80 16 22 Si 0.95 45.15 24.90 68.60 1.71 46.86 16 23 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 24 H -0.32 -15.49 7.11 99.48 0.71 -14.78 16 25 H -0.25 -10.73 6.38 99.48 0.63 -10.10 16 26 C -0.18 -4.92 7.83 22.64 0.18 -4.75 16 27 C 0.12 3.38 11.17 84.63 0.94 4.33 16 28 N -0.49 -14.77 7.87 -193.19 -1.52 -16.30 16 29 H 0.11 -0.01 7.92 -2.39 -0.02 -0.03 16 30 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.11 0.63 8.14 -2.39 -0.02 0.62 16 32 H 0.44 3.28 8.54 -92.71 -0.79 2.49 16 33 H 0.16 3.18 7.96 -2.91 -0.02 3.16 16 34 H 0.06 2.17 4.11 -2.39 -0.01 2.16 16 35 H 0.08 2.20 6.21 -2.39 -0.01 2.19 16 36 H 0.07 2.40 7.79 -2.39 -0.02 2.38 16 37 H 0.09 2.77 7.54 -2.39 -0.02 2.76 16 38 H 0.09 2.87 7.78 -2.39 -0.02 2.85 16 39 H 0.09 2.67 8.10 -2.39 -0.02 2.66 16 40 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.04 1.56 3.54 -2.39 -0.01 1.55 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 43 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 44 H 0.16 4.48 4.62 -2.91 -0.01 4.46 16 45 H 0.18 4.13 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -78.15 362.73 2.40 -75.75 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.19 Total: 17.90 kcal Atomic # 6 Polarization: 26.31 SS G_CDS: 8.16 Total: 34.47 kcal Atomic # 7 Polarization: -130.42 SS G_CDS: -7.54 Total: -137.96 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -0.11 Total: -37.02 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.71 Total: 46.86 kcal Total: -78.15 2.40 -75.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085881973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.355 kcal (2) G-P(sol) polarization free energy of solvation -78.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds