Wall clock time and date at job start Tue Mar 31 2020 18:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47365 * 2 1 4 4 C 1.36930 * 119.99909 * 274.03809 * 3 2 1 5 5 H 1.08006 * 120.00082 * 174.70213 * 4 3 2 6 6 C 1.38817 * 120.00156 * 354.70790 * 4 3 2 7 7 N 1.31617 * 119.99732 * 31.38317 * 6 4 3 8 8 Si 1.86792 * 119.99917 * 211.37995 * 6 4 3 9 9 H 1.48503 * 109.47254 * 85.00070 * 8 6 4 10 10 H 1.48507 * 109.47056 * 204.99777 * 8 6 4 11 11 H 1.48506 * 109.47458 * 324.99556 * 8 6 4 12 12 C 1.46500 * 120.00135 * 94.04140 * 3 2 1 13 13 H 1.08991 * 109.47225 * 179.97438 * 12 3 2 14 14 C 1.53003 * 109.47221 * 59.99560 * 12 3 2 15 15 C 1.53001 * 109.47128 * 300.00404 * 12 3 2 16 16 N 1.46503 * 109.46710 * 304.99632 * 15 12 3 17 17 C 1.34779 * 120.00366 * 179.97438 * 16 15 12 18 18 O 1.21594 * 119.99281 * 0.02562 * 17 16 15 19 19 C 1.47526 * 120.00402 * 180.02562 * 17 16 15 20 20 C 1.39532 * 120.24080 * 359.72617 * 19 17 16 21 21 C 1.38207 * 120.25712 * 179.70336 * 20 19 17 22 22 C 1.37962 * 120.71124 * 0.57330 * 21 20 19 23 23 C 1.39610 * 120.11258 * 359.72374 * 22 21 20 24 24 N 1.35987 * 133.39271 * 179.97438 * 23 22 21 25 25 C 1.30737 * 109.51116 * 179.97438 * 24 23 22 26 26 O 1.35277 * 125.05468 * 180.02562 * 25 24 23 27 27 N 1.36478 * 109.88922 * 0.02562 * 25 24 23 28 28 H 0.96998 * 126.32507 * 180.02562 * 27 25 24 29 29 C 1.37853 * 107.34969 * 359.97438 * 27 25 24 30 30 H 1.08997 * 109.46676 * 60.00182 * 1 2 3 31 31 H 1.09001 * 109.47132 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47000 * 300.00167 * 1 2 3 33 33 H 1.08999 * 109.47000 * 239.99833 * 2 1 3 34 34 H 1.09008 * 109.46934 * 120.00208 * 2 1 3 35 35 H 0.96996 * 119.99794 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.46489 * 60.00769 * 14 12 3 37 37 H 1.08996 * 109.47384 * 179.97438 * 14 12 3 38 38 H 1.08991 * 109.47363 * 300.00334 * 14 12 3 39 39 H 1.08999 * 109.47665 * 185.00253 * 15 12 3 40 40 H 1.08994 * 109.47411 * 64.99292 * 15 12 3 41 41 H 0.96998 * 119.99920 * 0.02562 * 16 15 12 42 42 H 1.07997 * 119.86790 * 359.97438 * 20 19 17 43 43 H 1.08002 * 119.64589 * 180.29805 * 21 20 19 44 44 H 1.08003 * 119.94609 * 179.70137 * 22 21 20 45 45 H 0.96702 * 113.99819 * 269.96000 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1679 2.0545 -1.1829 5 1 2.4455 3.0983 -1.1789 6 6 1.9626 1.3956 -2.3874 7 7 1.0861 0.4165 -2.4608 8 14 2.9304 1.8986 -3.9038 9 1 4.2411 1.2004 -3.9088 10 1 2.1677 1.5282 -5.1231 11 1 3.1517 3.3669 -3.8854 12 6 2.3469 2.0420 1.2656 13 1 2.6913 3.0568 1.0669 14 6 3.4518 1.2592 1.9779 15 6 1.1022 2.0900 2.1540 16 7 0.0069 2.7349 1.4254 17 6 -1.1958 2.8883 2.0140 18 8 -1.3716 2.4919 3.1500 19 6 -2.2989 3.5372 1.2801 20 6 -2.1011 3.9990 -0.0216 21 6 -3.1360 4.6014 -0.7117 22 6 -4.3731 4.7662 -0.1236 23 6 -4.5943 4.3180 1.1800 24 7 -5.6757 4.3389 2.0042 25 6 -5.3652 3.7829 3.1460 26 8 -6.2083 3.6369 4.1938 27 7 -4.0641 3.3716 3.1236 28 1 -3.5886 2.9299 3.8445 29 6 -3.5508 3.6989 1.8868 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 0.9424 -0.0436 -3.3025 36 1 4.3386 1.2250 1.3450 37 1 3.6966 1.7511 2.9193 38 1 3.1078 0.2443 2.1766 39 1 1.3221 2.6590 3.0573 40 1 0.8102 1.0756 2.4255 41 1 0.1471 3.0507 0.5190 42 1 -1.1367 3.8813 -0.4933 43 1 -2.9733 4.9509 -1.7205 44 1 -5.1717 5.2429 -0.6725 45 1 -6.1992 4.3801 4.8124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153860324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:57 Heat of formation + Delta-G solvation = 33.596025 kcal Electronic energy + Delta-G solvation = -29329.227614 eV Core-core repulsion = 25349.260853 eV Total energy + Delta-G solvation = -3979.966760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -42.25760 -39.51062 -38.10430 -37.04393 -36.44087 -33.99158 -33.18717 -32.26588 -30.37490 -30.07516 -28.94684 -28.44996 -25.98404 -23.87513 -23.50784 -22.44958 -22.08703 -21.76489 -20.17435 -19.25129 -18.89338 -17.69480 -17.59042 -17.00819 -16.50419 -15.77944 -15.68518 -15.41352 -14.84247 -14.49544 -14.20515 -14.13570 -13.84767 -13.79569 -13.06505 -12.73697 -12.65534 -12.48756 -12.25405 -12.06942 -11.94141 -11.70575 -11.62117 -11.51975 -11.17460 -10.83025 -10.77108 -10.75678 -10.65462 -10.34198 -10.33377 -9.88884 -9.69372 -9.61026 -9.33332 -8.66048 -8.41718 -8.29430 -8.15319 -7.08207 -5.91249 -3.12230 0.53600 1.42137 2.18801 2.50060 3.19569 3.34392 3.43657 3.46411 3.57076 3.65639 3.94541 4.41156 4.50150 4.89841 4.96803 5.10459 5.15020 5.21951 5.33036 5.37284 5.48995 5.68764 5.83678 5.89292 6.00673 6.06041 6.12796 6.24588 6.27161 6.30715 6.40977 6.58323 6.61623 6.65387 6.70272 6.79142 6.92429 6.95794 7.09304 7.18049 7.49161 7.61144 7.61957 7.76967 7.97156 8.07958 8.24083 8.54879 9.14320 9.78215 10.23801 11.11946 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014785 B = 0.003681 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.320289 B = 7603.897267 C = 8774.950775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.166 3.834 3 N -0.594 5.594 4 C -0.268 4.268 5 H 0.076 0.924 6 C 0.013 3.987 7 N -0.878 5.878 8 Si 0.879 3.121 9 H -0.290 1.290 10 H -0.295 1.295 11 H -0.282 1.282 12 C 0.161 3.839 13 H 0.069 0.931 14 C -0.158 4.158 15 C 0.104 3.896 16 N -0.689 5.689 17 C 0.557 3.443 18 O -0.571 6.571 19 C -0.124 4.124 20 C -0.050 4.050 21 C -0.130 4.130 22 C -0.040 4.040 23 C 0.041 3.959 24 N -0.485 5.485 25 C 0.444 3.556 26 O -0.442 6.442 27 N -0.583 5.583 28 H 0.433 0.567 29 C 0.111 3.889 30 H 0.088 0.912 31 H 0.013 0.987 32 H 0.019 0.981 33 H 0.084 0.916 34 H 0.006 0.994 35 H 0.253 0.747 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.413 0.587 42 H 0.144 0.856 43 H 0.140 0.860 44 H 0.135 0.865 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.870 7.953 8.816 13.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 N -0.317 5.317 4 C -0.396 4.396 5 H 0.094 0.906 6 C -0.186 4.186 7 N -0.521 5.521 8 Si 0.708 3.292 9 H -0.217 1.217 10 H -0.221 1.221 11 H -0.208 1.208 12 C 0.052 3.948 13 H 0.087 0.913 14 C -0.218 4.218 15 C -0.022 4.022 16 N -0.339 5.339 17 C 0.344 3.656 18 O -0.453 6.453 19 C -0.130 4.130 20 C -0.070 4.070 21 C -0.150 4.150 22 C -0.060 4.060 23 C -0.076 4.076 24 N -0.217 5.217 25 C 0.139 3.861 26 O -0.244 6.244 27 N -0.207 5.207 28 H 0.275 0.725 29 C -0.002 4.002 30 H 0.107 0.893 31 H 0.032 0.968 32 H 0.038 0.962 33 H 0.102 0.898 34 H 0.024 0.976 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.251 0.749 42 H 0.162 0.838 43 H 0.158 0.842 44 H 0.153 0.847 45 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -8.035 7.381 9.040 14.169 hybrid contribution 1.497 -0.008 -0.309 1.529 sum -6.537 7.373 8.731 13.165 Atomic orbital electron populations 1.22417 0.99115 0.98075 1.01321 1.20887 0.92473 0.84488 0.98059 1.44238 1.75708 1.11260 1.00454 1.19187 1.42231 0.94873 0.83260 0.90611 1.24689 0.98547 0.98162 0.97177 1.70276 1.30131 1.26483 1.25251 0.86659 0.81304 0.78003 0.83189 1.21732 1.22145 1.20772 1.20548 0.91100 0.96505 0.86624 0.91314 1.22185 0.99711 1.00615 0.99268 1.22069 0.88100 0.97314 0.94674 1.45788 1.10291 1.58711 1.19113 1.18054 0.82717 0.79032 0.85796 1.90637 1.83177 1.52596 1.18937 1.18957 0.91531 1.06733 0.95747 1.21384 1.00193 0.93903 0.91556 1.20904 0.92129 1.01286 1.00706 1.20431 0.97448 0.97223 0.90918 1.18766 0.88728 1.04266 0.95887 1.70689 1.27462 1.22431 1.01080 1.20350 0.79982 0.96360 0.89400 1.84834 1.57821 1.47249 1.34472 1.43460 1.10815 1.51277 1.15171 0.72481 1.18329 0.94886 1.00727 0.86254 0.89326 0.96770 0.96240 0.89803 0.97598 0.93639 0.92200 0.93659 0.92963 0.92691 0.91860 0.74880 0.83790 0.84214 0.84724 0.73367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.27 37.16 0.34 -2.98 16 2 C 0.17 3.68 5.01 -4.04 -0.02 3.66 16 3 N -0.59 -12.63 1.92 -165.66 -0.32 -12.95 16 4 C -0.27 -6.27 9.38 -15.06 -0.14 -6.41 16 5 H 0.08 1.73 7.83 -52.48 -0.41 1.32 16 6 C 0.01 0.32 4.97 -17.43 -0.09 0.23 16 7 N -0.88 -22.36 8.40 55.49 0.47 -21.89 16 8 Si 0.88 19.77 29.65 -169.99 -5.04 14.73 16 9 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 12 C 0.16 2.84 2.87 -67.93 -0.19 2.65 16 13 H 0.07 1.19 7.78 -51.93 -0.40 0.78 16 14 C -0.16 -2.49 9.18 37.16 0.34 -2.15 16 15 C 0.10 1.78 4.32 -4.04 -0.02 1.76 16 16 N -0.69 -11.80 3.94 -61.35 -0.24 -12.04 16 17 C 0.56 9.74 7.52 -12.47 -0.09 9.64 16 18 O -0.57 -10.93 15.27 5.28 0.08 -10.85 16 19 C -0.12 -1.95 5.88 -104.95 -0.62 -2.57 16 20 C -0.05 -0.70 9.53 -39.11 -0.37 -1.07 16 21 C -0.13 -1.56 9.99 -39.69 -0.40 -1.95 16 22 C -0.04 -0.51 10.09 -39.17 -0.40 -0.90 16 23 C 0.04 0.62 7.22 -84.69 -0.61 0.01 16 24 N -0.48 -7.26 11.32 -12.23 -0.14 -7.40 16 25 C 0.44 5.84 9.40 -88.85 -0.83 5.01 16 26 O -0.44 -4.28 13.63 -17.52 -0.24 -4.52 16 27 N -0.58 -8.13 6.03 -11.70 -0.07 -8.20 16 28 H 0.43 5.75 7.71 -40.82 -0.31 5.43 16 29 C 0.11 1.73 6.88 -83.66 -0.58 1.15 16 30 H 0.09 2.18 6.30 -51.93 -0.33 1.85 16 31 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.02 0.41 4.84 -51.93 -0.25 0.16 16 33 H 0.08 2.12 5.84 -51.93 -0.30 1.82 16 34 H 0.01 0.12 6.43 -51.92 -0.33 -0.21 16 35 H 0.25 6.44 8.31 -40.82 -0.34 6.10 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.84 6.66 -51.93 -0.35 0.50 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.06 1.19 6.92 -51.93 -0.36 0.83 16 41 H 0.41 7.18 5.92 -40.82 -0.24 6.94 16 42 H 0.14 1.97 6.39 -52.49 -0.34 1.64 16 43 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 44 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 45 H 0.41 1.56 9.06 45.56 0.41 1.97 16 LS Contribution 361.63 15.07 5.45 5.45 Total: -1.00 -29.60 361.63 -8.61 -38.21 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -4.89 Total: 13.38 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -3.67 Total: 6.08 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: -0.30 Total: -62.49 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.16 Total: -15.36 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.04 Total: 14.73 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.60 -8.61 -38.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153860324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.807 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds