Wall clock time and date at job start Tue Mar 31 2020 18:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47365 * 2 1 4 4 C 1.36930 * 119.99909 * 274.03809 * 3 2 1 5 5 H 1.08006 * 120.00082 * 174.70213 * 4 3 2 6 6 C 1.38817 * 120.00156 * 354.70790 * 4 3 2 7 7 N 1.31617 * 119.99732 * 31.38317 * 6 4 3 8 8 Si 1.86792 * 119.99917 * 211.37995 * 6 4 3 9 9 H 1.48503 * 109.47254 * 85.00070 * 8 6 4 10 10 H 1.48507 * 109.47056 * 204.99777 * 8 6 4 11 11 H 1.48506 * 109.47458 * 324.99556 * 8 6 4 12 12 C 1.46500 * 120.00135 * 94.04140 * 3 2 1 13 13 H 1.08991 * 109.47225 * 179.97438 * 12 3 2 14 14 C 1.53003 * 109.47221 * 59.99560 * 12 3 2 15 15 C 1.53001 * 109.47128 * 300.00404 * 12 3 2 16 16 N 1.46503 * 109.46710 * 304.99632 * 15 12 3 17 17 C 1.34779 * 120.00366 * 179.97438 * 16 15 12 18 18 O 1.21594 * 119.99281 * 0.02562 * 17 16 15 19 19 C 1.47526 * 120.00402 * 180.02562 * 17 16 15 20 20 C 1.39532 * 120.24080 * 359.72617 * 19 17 16 21 21 C 1.38207 * 120.25712 * 179.70336 * 20 19 17 22 22 C 1.37962 * 120.71124 * 0.57330 * 21 20 19 23 23 C 1.39610 * 120.11258 * 359.72374 * 22 21 20 24 24 N 1.35987 * 133.39271 * 179.97438 * 23 22 21 25 25 C 1.30737 * 109.51116 * 179.97438 * 24 23 22 26 26 O 1.35277 * 125.05468 * 180.02562 * 25 24 23 27 27 N 1.36478 * 109.88922 * 0.02562 * 25 24 23 28 28 H 0.96998 * 126.32507 * 180.02562 * 27 25 24 29 29 C 1.37853 * 107.34969 * 359.97438 * 27 25 24 30 30 H 1.08997 * 109.46676 * 60.00182 * 1 2 3 31 31 H 1.09001 * 109.47132 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47000 * 300.00167 * 1 2 3 33 33 H 1.08999 * 109.47000 * 239.99833 * 2 1 3 34 34 H 1.09008 * 109.46934 * 120.00208 * 2 1 3 35 35 H 0.96996 * 119.99794 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.46489 * 60.00769 * 14 12 3 37 37 H 1.08996 * 109.47384 * 179.97438 * 14 12 3 38 38 H 1.08991 * 109.47363 * 300.00334 * 14 12 3 39 39 H 1.08999 * 109.47665 * 185.00253 * 15 12 3 40 40 H 1.08994 * 109.47411 * 64.99292 * 15 12 3 41 41 H 0.96998 * 119.99920 * 0.02562 * 16 15 12 42 42 H 1.07997 * 119.86790 * 359.97438 * 20 19 17 43 43 H 1.08002 * 119.64589 * 180.29805 * 21 20 19 44 44 H 1.08003 * 119.94609 * 179.70137 * 22 21 20 45 45 H 0.96702 * 113.99819 * 269.96000 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1679 2.0545 -1.1829 5 1 2.4455 3.0983 -1.1789 6 6 1.9626 1.3956 -2.3874 7 7 1.0861 0.4165 -2.4608 8 14 2.9304 1.8986 -3.9038 9 1 4.2411 1.2004 -3.9088 10 1 2.1677 1.5282 -5.1231 11 1 3.1517 3.3669 -3.8854 12 6 2.3469 2.0420 1.2656 13 1 2.6913 3.0568 1.0669 14 6 3.4518 1.2592 1.9779 15 6 1.1022 2.0900 2.1540 16 7 0.0069 2.7349 1.4254 17 6 -1.1958 2.8883 2.0140 18 8 -1.3716 2.4919 3.1500 19 6 -2.2989 3.5372 1.2801 20 6 -2.1011 3.9990 -0.0216 21 6 -3.1360 4.6014 -0.7117 22 6 -4.3731 4.7662 -0.1236 23 6 -4.5943 4.3180 1.1800 24 7 -5.6757 4.3389 2.0042 25 6 -5.3652 3.7829 3.1460 26 8 -6.2083 3.6369 4.1938 27 7 -4.0641 3.3716 3.1236 28 1 -3.5886 2.9299 3.8445 29 6 -3.5508 3.6989 1.8868 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 0.9424 -0.0436 -3.3025 36 1 4.3386 1.2250 1.3450 37 1 3.6966 1.7511 2.9193 38 1 3.1078 0.2443 2.1766 39 1 1.3221 2.6590 3.0573 40 1 0.8102 1.0756 2.4255 41 1 0.1471 3.0507 0.5190 42 1 -1.1367 3.8813 -0.4933 43 1 -2.9733 4.9509 -1.7205 44 1 -5.1717 5.2429 -0.6725 45 1 -6.1992 4.3801 4.8124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153860324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:55 Heat of formation + Delta-G solvation = 12.230334 kcal Electronic energy + Delta-G solvation = -29330.154100 eV Core-core repulsion = 25349.260853 eV Total energy + Delta-G solvation = -3980.893246 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.30338 -40.82547 -39.10383 -38.56057 -37.42345 -35.53379 -34.28333 -33.78267 -32.01566 -31.30973 -30.19070 -29.94772 -27.27483 -25.62327 -24.67767 -23.66196 -23.33484 -23.08305 -21.42186 -20.77499 -19.88423 -18.88280 -18.70767 -18.63625 -17.56653 -17.20184 -16.96555 -16.82046 -16.17693 -15.76492 -15.50907 -15.34918 -15.21717 -14.94661 -14.65541 -14.29933 -14.11198 -13.72422 -13.60192 -13.45239 -13.15580 -13.08417 -12.75427 -12.67427 -12.65023 -12.54464 -12.43388 -12.35012 -12.06988 -11.85655 -11.58462 -11.45572 -11.37829 -11.11911 -10.91863 -10.16315 -10.00349 -9.47480 -9.24352 -8.85910 -7.77050 -4.96393 -0.52505 0.36262 1.18924 1.46308 1.54229 1.62823 1.64740 1.98743 2.27556 2.60757 2.70118 2.82370 3.32834 3.46087 3.67530 3.79737 3.91806 4.09353 4.10402 4.17175 4.33549 4.42127 4.62653 4.68861 4.70823 4.79652 4.82170 4.89947 5.00868 5.13300 5.15222 5.27270 5.30744 5.31502 5.37999 5.38354 5.42932 5.59815 5.72314 5.75602 5.85174 5.91544 6.21027 6.40237 6.57053 6.59506 6.63815 7.19077 7.29523 8.01161 8.43853 9.25193 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014785 B = 0.003681 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.320289 B = 7603.897267 C = 8774.950775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.173 3.827 3 N -0.600 5.600 4 C -0.257 4.257 5 H 0.084 0.916 6 C -0.030 4.030 7 N -0.900 5.900 8 Si 0.930 3.070 9 H -0.303 1.303 10 H -0.307 1.307 11 H -0.272 1.272 12 C 0.160 3.840 13 H 0.077 0.923 14 C -0.150 4.150 15 C 0.112 3.888 16 N -0.689 5.689 17 C 0.554 3.446 18 O -0.593 6.593 19 C -0.145 4.145 20 C -0.050 4.050 21 C -0.123 4.123 22 C -0.034 4.034 23 C 0.025 3.975 24 N -0.507 5.507 25 C 0.454 3.546 26 O -0.440 6.440 27 N -0.585 5.585 28 H 0.433 0.567 29 C 0.091 3.909 30 H 0.064 0.936 31 H 0.011 0.989 32 H 0.023 0.977 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.244 0.756 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.411 0.589 42 H 0.144 0.856 43 H 0.171 0.829 44 H 0.162 0.838 45 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.978 9.421 9.307 14.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.048 3.952 3 N -0.323 5.323 4 C -0.386 4.386 5 H 0.102 0.898 6 C -0.226 4.226 7 N -0.546 5.546 8 Si 0.761 3.239 9 H -0.231 1.231 10 H -0.235 1.235 11 H -0.197 1.197 12 C 0.052 3.948 13 H 0.095 0.905 14 C -0.210 4.210 15 C -0.013 4.013 16 N -0.338 5.338 17 C 0.343 3.657 18 O -0.477 6.477 19 C -0.152 4.152 20 C -0.071 4.071 21 C -0.143 4.143 22 C -0.053 4.053 23 C -0.092 4.092 24 N -0.240 5.240 25 C 0.150 3.850 26 O -0.246 6.246 27 N -0.209 5.209 28 H 0.276 0.724 29 C -0.022 4.022 30 H 0.083 0.917 31 H 0.030 0.970 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.250 0.750 42 H 0.161 0.839 43 H 0.189 0.811 44 H 0.179 0.821 45 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -8.127 8.894 9.572 15.387 hybrid contribution 1.475 -0.422 -0.360 1.576 sum -6.651 8.471 9.211 14.172 Atomic orbital electron populations 1.22215 0.99155 0.97589 1.00203 1.20664 0.92260 0.85121 0.97133 1.44336 1.75692 1.10886 1.01367 1.19449 1.40149 0.95149 0.83860 0.89840 1.25127 0.99539 0.98968 0.99005 1.70400 1.31453 1.27819 1.24907 0.85845 0.79369 0.77916 0.80796 1.23088 1.23496 1.19722 1.20742 0.91816 0.96901 0.85302 0.90468 1.22081 0.98390 1.00203 1.00296 1.21958 0.87658 0.96645 0.95085 1.45783 1.10395 1.58683 1.18982 1.18354 0.83055 0.78679 0.85636 1.90610 1.83554 1.53644 1.19881 1.18911 0.91268 1.08364 0.96609 1.21504 1.00819 0.93715 0.91013 1.21224 0.91216 1.00152 1.01724 1.20811 0.98289 0.96114 0.90132 1.19160 0.88592 1.04648 0.96825 1.70695 1.27725 1.23788 1.01793 1.20472 0.79836 0.94908 0.89819 1.84803 1.56738 1.48899 1.34141 1.43494 1.11130 1.51383 1.14889 0.72433 1.18512 0.95134 1.01560 0.87021 0.91678 0.96967 0.95807 0.92787 0.96318 0.94658 0.92842 0.90623 0.93613 0.91087 0.93613 0.75049 0.83885 0.81122 0.82090 0.70281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.90 9.27 71.98 0.67 -5.24 16 2 C 0.17 7.71 5.01 86.38 0.43 8.14 16 3 N -0.60 -25.01 1.92 -678.02 -1.30 -26.31 16 4 C -0.26 -11.80 9.38 84.04 0.79 -11.01 16 5 H 0.08 3.67 7.83 -2.91 -0.02 3.65 16 6 C -0.03 -1.47 4.97 84.86 0.42 -1.05 16 7 N -0.90 -46.49 8.40 21.65 0.18 -46.31 16 8 Si 0.93 40.73 29.65 68.60 2.03 42.76 16 9 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 10 H -0.31 -14.00 7.11 99.48 0.71 -13.30 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 12 C 0.16 5.36 2.87 44.99 0.13 5.48 16 13 H 0.08 2.48 7.78 -2.39 -0.02 2.46 16 14 C -0.15 -4.40 9.18 71.98 0.66 -3.73 16 15 C 0.11 3.69 4.32 86.38 0.37 4.06 16 16 N -0.69 -23.18 3.94 -466.27 -1.84 -25.02 16 17 C 0.55 19.31 7.52 86.69 0.65 19.96 16 18 O -0.59 -22.68 15.27 -4.01 -0.06 -22.74 16 19 C -0.15 -4.56 5.88 -20.08 -0.12 -4.68 16 20 C -0.05 -1.36 9.53 22.57 0.22 -1.14 16 21 C -0.12 -2.69 9.99 22.20 0.22 -2.47 16 22 C -0.03 -0.78 10.09 22.54 0.23 -0.55 16 23 C 0.03 0.73 7.22 39.36 0.28 1.01 16 24 N -0.51 -14.67 11.32 -306.46 -3.47 -18.14 16 25 C 0.45 11.53 9.40 179.73 1.69 13.21 16 26 O -0.44 -7.80 13.63 -85.62 -1.17 -8.97 16 27 N -0.58 -16.13 6.03 -301.79 -1.82 -17.95 16 28 H 0.43 11.52 7.71 -92.71 -0.71 10.81 16 29 C 0.09 2.79 6.88 39.17 0.27 3.06 16 30 H 0.06 3.24 6.30 -2.39 -0.02 3.23 16 31 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.02 1.00 4.84 -2.39 -0.01 0.99 16 33 H 0.05 2.76 5.84 -2.39 -0.01 2.75 16 34 H 0.02 0.77 6.43 -2.38 -0.02 0.76 16 35 H 0.24 12.68 8.31 -92.71 -0.77 11.91 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.04 1.39 6.66 -2.39 -0.02 1.38 16 39 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.05 1.68 6.92 -2.39 -0.02 1.66 16 41 H 0.41 14.07 5.92 -92.71 -0.55 13.52 16 42 H 0.14 3.82 6.39 -2.91 -0.02 3.80 16 43 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 44 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 45 H 0.43 2.41 9.06 -74.06 -0.67 1.74 16 Total: -1.00 -63.26 361.63 -1.38 -64.64 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -0.86 Total: 32.97 kcal Atomic # 6 Polarization: 18.15 SS G_CDS: 6.91 Total: 25.06 kcal Atomic # 7 Polarization: -125.49 SS G_CDS: -8.24 Total: -133.73 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -1.23 Total: -31.71 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -63.26 -1.38 -64.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153860324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.872 kcal (2) G-P(sol) polarization free energy of solvation -63.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds