Wall clock time and date at job start Tue Mar 31 2020 18:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47143 * 2 1 4 4 C 1.36932 * 119.99737 * 275.73058 * 3 2 1 5 5 H 1.08000 * 119.99983 * 33.27068 * 4 3 2 6 6 C 1.38814 * 120.00128 * 213.26643 * 4 3 2 7 7 N 1.31614 * 119.99622 * 17.27045 * 6 4 3 8 8 Si 1.86799 * 119.99955 * 197.27027 * 6 4 3 9 9 H 1.48496 * 109.47477 * 59.99968 * 8 6 4 10 10 H 1.48499 * 109.47208 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47190 * 300.00040 * 8 6 4 12 12 C 1.46500 * 120.00257 * 95.72923 * 3 2 1 13 13 H 1.08993 * 109.47077 * 180.08922 * 12 3 2 14 14 C 1.53002 * 109.46858 * 60.08969 * 12 3 2 15 15 C 1.53000 * 109.47077 * 300.09449 * 12 3 2 16 16 N 1.46499 * 109.47116 * 304.99839 * 15 12 3 17 17 C 1.34776 * 120.00146 * 180.02562 * 16 15 12 18 18 O 1.21593 * 120.00122 * 0.02562 * 17 16 15 19 19 C 1.47507 * 119.99826 * 179.97438 * 17 16 15 20 20 C 1.40152 * 119.95169 * 0.02562 * 19 17 16 21 21 C 1.36207 * 120.49678 * 179.97438 * 20 19 17 22 22 C 1.40023 * 120.08489 * 0.23497 * 21 20 19 23 23 N 1.35557 * 133.26717 * 179.71594 * 22 21 20 24 24 C 1.30925 * 109.71101 * 180.02562 * 23 22 21 25 25 O 1.35195 * 125.01229 * 179.97438 * 24 23 22 26 26 N 1.36258 * 109.97219 * 359.49476 * 24 23 22 27 27 H 0.97000 * 126.39755 * 179.97438 * 26 24 23 28 28 C 1.38569 * 107.20330 * 0.58083 * 26 24 23 29 29 C 1.38214 * 133.90038 * 179.30550 * 28 26 24 30 30 H 1.09001 * 109.47194 * 300.00186 * 1 2 3 31 31 H 1.08998 * 109.46898 * 60.00633 * 1 2 3 32 32 H 1.09001 * 109.46622 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47194 * 239.99814 * 2 1 3 34 34 H 1.09000 * 109.47343 * 119.99630 * 2 1 3 35 35 H 0.97009 * 119.99654 * 180.02562 * 7 6 4 36 36 H 1.09005 * 109.47068 * 179.97438 * 14 12 3 37 37 H 1.08993 * 109.47634 * 300.00220 * 14 12 3 38 38 H 1.09001 * 109.47143 * 60.00068 * 14 12 3 39 39 H 1.09001 * 109.46920 * 185.00056 * 15 12 3 40 40 H 1.08997 * 109.47307 * 64.99938 * 15 12 3 41 41 H 0.97005 * 120.00174 * 359.97438 * 16 15 12 42 42 H 1.08003 * 119.75053 * 359.97323 * 20 19 17 43 43 H 1.08003 * 119.95756 * 179.97438 * 21 20 19 44 44 H 0.96705 * 114.00174 * 90.02472 * 25 24 23 45 45 H 1.08008 * 120.19823 * 0.05353 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1349 2.0662 -1.1800 5 1 1.4370 1.8810 -1.9831 6 6 3.1501 2.9986 -1.3439 7 7 4.1870 2.9918 -0.5334 8 14 3.0444 4.2630 -2.7149 9 1 1.8242 5.0895 -2.5331 10 1 4.2441 5.1373 -2.6755 11 1 2.9807 3.5679 -4.0255 12 6 2.3819 2.0297 1.2624 13 1 2.7189 3.0471 1.0643 14 6 3.5077 1.2414 1.9348 15 6 1.1630 2.0668 2.1863 16 7 0.0465 2.7172 1.4958 17 6 -1.1387 2.8637 2.1205 18 8 -1.2813 2.4564 3.2572 19 6 -2.2626 3.5191 1.4254 20 6 -2.0970 3.9886 0.1153 21 6 -3.1275 4.5951 -0.5371 22 6 -4.3631 4.7586 0.1011 23 7 -5.5399 5.3125 -0.2808 24 6 -6.4095 5.2170 0.6932 25 8 -7.6822 5.6704 0.6440 26 7 -5.8459 4.5837 1.7600 27 1 -6.2769 4.3878 2.6066 28 6 -4.5378 4.2842 1.4145 29 6 -3.4893 3.6699 2.0730 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.8963 3.6437 -0.6477 36 1 3.7786 1.7241 2.8739 37 1 3.1709 0.2239 2.1329 38 1 4.3762 1.2149 1.2766 39 1 1.4080 2.6269 3.0887 40 1 0.8802 1.0492 2.4558 41 1 0.1605 3.0432 0.5893 42 1 -1.1451 3.8688 -0.3806 43 1 -2.9901 4.9540 -1.5464 44 1 -8.3189 5.0207 0.3157 45 1 -3.6190 3.3083 3.0825 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155513934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:50 Heat of formation + Delta-G solvation = 0.903616 kcal Electronic energy + Delta-G solvation = -28873.538144 eV Core-core repulsion = 24892.153734 eV Total energy + Delta-G solvation = -3981.384410 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.28710 -40.93126 -39.11103 -38.50804 -37.25925 -35.26029 -34.38014 -33.67456 -32.73649 -31.20685 -30.42019 -29.81298 -27.05876 -25.73386 -24.48000 -23.91645 -23.26153 -22.75579 -21.46862 -20.96797 -20.07521 -19.26072 -18.56018 -18.44956 -17.63794 -17.00698 -16.84122 -16.49767 -16.35136 -15.73082 -15.48791 -15.35721 -15.09502 -15.01390 -14.66673 -14.27037 -14.21795 -13.93497 -13.75460 -13.45987 -13.15916 -13.04939 -12.73352 -12.68605 -12.64889 -12.62981 -12.46237 -12.34104 -12.05632 -11.92326 -11.81215 -11.30406 -11.18939 -11.12133 -10.97955 -10.37323 -9.94303 -9.57808 -9.25706 -8.47724 -7.77194 -5.26970 -0.53988 0.27055 1.16571 1.38811 1.55682 1.59285 1.62765 2.00703 2.33853 2.59598 2.69148 2.82154 3.37600 3.41274 3.69028 3.79626 3.96364 4.08274 4.14503 4.20331 4.27909 4.48886 4.52179 4.62330 4.74076 4.85943 4.92225 4.94343 4.98286 5.01546 5.11598 5.12051 5.24691 5.27110 5.28121 5.38005 5.52457 5.61245 5.64945 5.75408 5.81649 5.86633 5.92890 6.55045 6.57372 6.64403 6.71106 7.26789 7.31071 7.98091 8.50553 9.26623 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014283 B = 0.003399 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.955152 B = 8235.899980 C = 9401.530350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.139 3.861 3 N -0.591 5.591 4 C -0.262 4.262 5 H 0.063 0.937 6 C -0.029 4.029 7 N -0.915 5.915 8 Si 0.947 3.053 9 H -0.271 1.271 10 H -0.303 1.303 11 H -0.284 1.284 12 C 0.181 3.819 13 H 0.071 0.929 14 C -0.135 4.135 15 C 0.114 3.886 16 N -0.692 5.692 17 C 0.555 3.445 18 O -0.585 6.585 19 C -0.127 4.127 20 C -0.085 4.085 21 C -0.076 4.076 22 C 0.069 3.931 23 N -0.525 5.525 24 C 0.476 3.524 25 O -0.439 6.439 26 N -0.581 5.581 27 H 0.442 0.558 28 C 0.039 3.961 29 C -0.036 4.036 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.030 0.970 34 H 0.044 0.956 35 H 0.248 0.752 36 H 0.049 0.951 37 H 0.042 0.958 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.411 0.589 42 H 0.140 0.860 43 H 0.149 0.851 44 H 0.437 0.563 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.807 1.279 4.408 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.014 3.986 3 N -0.313 5.313 4 C -0.392 4.392 5 H 0.081 0.919 6 C -0.227 4.227 7 N -0.559 5.559 8 Si 0.776 3.224 9 H -0.196 1.196 10 H -0.230 1.230 11 H -0.210 1.210 12 C 0.074 3.926 13 H 0.089 0.911 14 C -0.195 4.195 15 C -0.011 4.011 16 N -0.342 5.342 17 C 0.343 3.657 18 O -0.468 6.468 19 C -0.131 4.131 20 C -0.106 4.106 21 C -0.096 4.096 22 C -0.051 4.051 23 N -0.258 5.258 24 C 0.171 3.829 25 O -0.245 6.245 26 N -0.207 5.207 27 H 0.285 0.715 28 C -0.070 4.070 29 C -0.057 4.057 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.249 0.751 42 H 0.158 0.842 43 H 0.167 0.833 44 H 0.301 0.699 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -19.760 1.985 4.558 20.375 hybrid contribution 0.138 -0.010 -0.169 0.218 sum -19.621 1.975 4.389 20.203 Atomic orbital electron populations 1.22268 0.98079 1.00220 1.00997 1.20830 0.93002 0.86235 0.98569 1.43997 1.76124 1.09140 1.01998 1.19230 1.07994 1.18012 0.93981 0.91899 1.25681 0.94486 1.02947 0.99581 1.70131 1.08343 1.36353 1.41036 0.85671 0.76776 0.79786 0.80121 1.19618 1.23022 1.21014 1.20356 0.89870 0.98029 0.84329 0.91085 1.21887 0.99612 0.98807 0.99173 1.21952 0.87426 0.96470 0.95297 1.45871 1.10747 1.58496 1.19044 1.18299 0.83029 0.78899 0.85447 1.90704 1.83932 1.52737 1.19473 1.19566 0.93778 1.04204 0.95595 1.20905 0.99664 0.96934 0.93118 1.20057 0.88963 0.99530 1.01005 1.19184 0.93691 0.99823 0.92398 1.70621 1.01296 1.26174 1.27709 1.20423 0.88006 0.91405 0.83096 1.84793 1.11032 1.41876 1.86838 1.43283 1.10008 1.49389 1.17988 0.71524 1.18354 0.86543 1.05466 0.96680 1.19953 0.88921 0.96835 1.00036 0.93488 0.93926 0.92783 0.95120 0.93807 0.94311 0.93201 0.93870 0.93330 0.92540 0.92676 0.75082 0.84185 0.83301 0.69891 0.83708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.28 9.87 71.98 0.71 -4.57 16 2 C 0.14 5.37 5.67 86.38 0.49 5.85 16 3 N -0.59 -25.64 1.85 -678.03 -1.25 -26.90 16 4 C -0.26 -12.59 9.26 84.03 0.78 -11.81 16 5 H 0.06 3.00 7.89 -2.91 -0.02 2.98 16 6 C -0.03 -1.46 4.85 84.86 0.41 -1.05 16 7 N -0.91 -48.49 10.60 21.65 0.23 -48.26 16 8 Si 0.95 41.07 29.59 68.60 2.03 43.10 16 9 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 10 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 C 0.18 7.57 1.92 44.99 0.09 7.65 16 13 H 0.07 3.43 6.04 -2.39 -0.01 3.41 16 14 C -0.14 -5.40 9.05 71.98 0.65 -4.75 16 15 C 0.11 4.22 4.34 86.38 0.37 4.60 16 16 N -0.69 -24.33 3.93 -466.30 -1.83 -26.17 16 17 C 0.55 19.08 7.52 86.69 0.65 19.74 16 18 O -0.59 -22.94 16.33 -4.01 -0.07 -23.00 16 19 C -0.13 -3.68 5.88 -20.06 -0.12 -3.80 16 20 C -0.09 -2.31 9.46 22.26 0.21 -2.10 16 21 C -0.08 -1.95 10.03 22.23 0.22 -1.73 16 22 C 0.07 1.79 7.22 39.61 0.29 2.08 16 23 N -0.53 -13.20 11.29 -306.25 -3.46 -16.66 16 24 C 0.48 8.54 9.39 179.75 1.69 10.22 16 25 O -0.44 -4.72 13.62 -84.75 -1.15 -5.88 16 26 N -0.58 -9.13 6.27 -302.68 -1.90 -11.03 16 27 H 0.44 3.67 8.96 -92.71 -0.83 2.84 16 28 C 0.04 0.89 7.29 38.68 0.28 1.17 16 29 C -0.04 -0.90 9.60 22.58 0.22 -0.69 16 30 H 0.05 1.64 4.99 -2.39 -0.01 1.62 16 31 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.03 1.23 8.09 -2.39 -0.02 1.21 16 34 H 0.04 1.61 6.45 -2.39 -0.02 1.60 16 35 H 0.25 13.08 8.31 -92.70 -0.77 12.31 16 36 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.04 1.57 6.67 -2.39 -0.02 1.55 16 38 H 0.05 2.23 7.39 -2.39 -0.02 2.22 16 39 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.05 2.05 7.05 -2.39 -0.02 2.04 16 41 H 0.41 14.71 5.89 -92.70 -0.55 14.16 16 42 H 0.14 3.81 6.36 -2.91 -0.02 3.79 16 43 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 44 H 0.44 -0.37 9.06 -74.05 -0.67 -1.04 16 45 H 0.15 3.40 7.64 -2.91 -0.02 3.38 16 Total: -1.00 -65.28 367.57 -1.44 -66.72 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: -0.97 Total: 27.25 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 6.94 Total: 20.82 kcal Atomic # 7 Polarization: -120.80 SS G_CDS: -8.21 Total: -129.01 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -1.22 Total: -28.88 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -65.28 -1.44 -66.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155513934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.621 kcal (2) G-P(sol) polarization free energy of solvation -65.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds