Wall clock time and date at job start Tue Mar 31 2020 17:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.47269 * 2 1 4 4 C 1.34664 * 116.99956 * 179.97438 * 3 2 1 5 5 O 1.21406 * 120.00502 * 0.02562 * 4 3 2 6 6 C 1.48287 * 119.99738 * 180.02562 * 4 3 2 7 7 N 1.32222 * 118.89293 * 359.97438 * 6 4 3 8 8 C 1.33116 * 120.41555 * 179.72075 * 7 6 4 9 9 C 1.46046 * 134.87618 * 179.97438 * 8 7 6 10 10 C 1.34557 * 106.97277 * 180.02562 * 9 8 7 11 11 N 1.36468 * 109.93541 * 359.97438 * 10 9 8 12 12 C 1.46504 * 125.04748 * 179.97438 * 11 10 9 13 13 C 1.37160 * 109.91076 * 0.02562 * 11 10 9 14 14 C 1.40151 * 134.51406 * 180.02562 * 13 11 10 15 15 N 1.38590 * 120.67053 * 359.94472 * 14 13 11 16 16 C 1.46903 * 110.99917 * 79.32675 * 15 14 13 17 17 C 1.52996 * 109.47359 * 60.19571 * 16 15 14 18 18 C 1.46901 * 110.99848 * 203.27532 * 15 14 13 19 19 C 1.50698 * 109.47172 * 164.46065 * 18 15 14 20 20 H 1.08002 * 119.99902 * 4.61413 * 19 18 15 21 21 C 1.37875 * 119.99971 * 184.60913 * 19 18 15 22 22 N 1.31514 * 120.00221 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99984 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46853 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47034 * 119.99949 * 23 21 19 26 26 H 1.48496 * 109.47167 * 240.00041 * 23 21 19 27 27 N 1.32676 * 118.64976 * 180.02562 * 14 13 11 28 28 H 1.09000 * 109.47183 * 299.99629 * 1 2 3 29 29 H 1.09003 * 109.47016 * 60.00045 * 1 2 3 30 30 H 1.08997 * 109.47220 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47183 * 240.00371 * 2 1 3 32 32 H 1.08997 * 109.47436 * 120.00524 * 2 1 3 33 33 H 1.08003 * 126.51263 * 359.97438 * 9 8 7 34 34 H 1.08003 * 125.02908 * 179.97438 * 10 9 8 35 35 H 1.08995 * 109.47022 * 85.98288 * 12 11 10 36 36 H 1.08997 * 109.47079 * 205.98445 * 12 11 10 37 37 H 1.09005 * 109.46821 * 325.97994 * 12 11 10 38 38 H 1.08994 * 109.46869 * 180.19941 * 16 15 14 39 39 H 1.09000 * 109.46744 * 300.19473 * 16 15 14 40 40 H 1.09003 * 109.47230 * 65.63677 * 17 16 15 41 41 H 1.09000 * 109.47203 * 185.63800 * 17 16 15 42 42 H 1.09004 * 109.47385 * 305.64409 * 17 16 15 43 43 H 1.09000 * 109.47139 * 284.46286 * 18 15 14 44 44 H 1.09006 * 109.47167 * 44.46040 * 18 15 14 45 45 H 0.97003 * 120.00241 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3490 1.5454 0.0005 5 8 4.0887 0.5826 0.0005 6 6 3.9158 2.9156 0.0011 7 7 3.0902 3.9485 0.0006 8 6 3.5661 5.1916 0.0067 9 6 2.9680 6.5240 0.0078 10 6 3.9812 7.4094 0.0149 11 7 5.1758 6.7495 0.0191 12 6 6.4921 7.3926 0.0266 13 6 4.9611 5.3948 0.0141 14 6 5.7944 4.2679 0.0156 15 7 7.1731 4.4082 0.0225 16 6 7.6647 4.7112 1.3732 17 6 7.2869 3.5712 2.3211 18 6 7.8269 3.2094 -0.5190 19 6 9.2618 3.5270 -0.8526 20 1 9.6703 4.4972 -0.6111 21 6 10.0531 2.5791 -1.4660 22 7 9.5556 1.3978 -1.7605 23 14 11.8319 2.9726 -1.8789 24 1 12.1453 4.3585 -1.4471 25 1 12.7263 2.0205 -1.1727 26 1 12.0383 2.8516 -3.3445 27 7 5.2364 3.0642 0.0086 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.9129 6.7547 0.0028 34 1 3.8661 8.4833 0.0170 35 1 6.7821 7.6146 1.0535 36 1 7.2261 6.7230 -0.4216 37 1 6.4473 8.3186 -0.5467 38 1 8.7490 4.8197 1.3494 39 1 7.2143 5.6398 1.7240 40 1 7.8169 2.6647 2.0287 41 1 7.5624 3.8402 3.3409 42 1 6.2122 3.3965 2.2691 43 1 7.7945 2.4114 0.2228 44 1 7.3067 2.8880 -1.4214 45 1 10.1124 0.7308 -2.1917 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:17 Heat of formation + Delta-G solvation = 27.241794 kcal Electronic energy + Delta-G solvation = -29306.303114 eV Core-core repulsion = 25326.060813 eV Total energy + Delta-G solvation = -3980.242301 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.93059 -40.14503 -38.84415 -37.43034 -36.31618 -33.22874 -32.52948 -32.02147 -31.42197 -30.32102 -29.38074 -26.93593 -26.71525 -24.95552 -23.60113 -23.30303 -22.62729 -21.08393 -20.77141 -19.76969 -18.23781 -17.65122 -16.76163 -16.52373 -16.32137 -16.04993 -15.85962 -15.77630 -14.97083 -14.46358 -14.31882 -14.12674 -13.66201 -13.40867 -13.35558 -13.31382 -12.92318 -12.81277 -12.51601 -12.34247 -12.06423 -12.02050 -11.75501 -11.59275 -11.49388 -11.21035 -11.12205 -10.87196 -10.73611 -10.59629 -10.42400 -10.35353 -10.32912 -9.99631 -9.39155 -8.89915 -8.76656 -8.55049 -8.24920 -7.50640 -6.03782 -4.08703 0.77027 1.18966 2.42808 2.57560 2.68701 2.76973 3.28092 3.35273 3.37884 3.95754 4.09821 4.18642 4.43364 4.54306 4.74610 4.77931 4.92306 4.96681 5.01226 5.13301 5.24852 5.26456 5.30880 5.41520 5.50049 5.64094 5.65818 5.68618 5.74054 5.79252 5.88198 5.90855 6.09701 6.19210 6.35769 6.42457 6.48880 6.69569 6.74786 7.06373 7.07538 7.26887 7.46580 7.65073 7.81697 7.89477 8.04530 8.34746 8.45368 8.96790 9.54548 11.05959 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009664 B = 0.004516 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.713357 B = 6198.183929 C = 8413.581075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 O -0.337 6.337 4 C 0.542 3.458 5 O -0.467 6.467 6 C 0.282 3.718 7 N -0.451 5.451 8 C 0.114 3.886 9 C -0.190 4.190 10 C 0.074 3.926 11 N -0.450 5.450 12 C 0.065 3.935 13 C 0.017 3.983 14 C 0.387 3.613 15 N -0.478 5.478 16 C 0.065 3.935 17 C -0.183 4.183 18 C 0.198 3.802 19 C -0.519 4.519 20 H 0.063 0.937 21 C 0.060 3.940 22 N -0.886 5.886 23 Si 0.897 3.103 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 N -0.481 5.481 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.159 0.841 34 H 0.180 0.820 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.022 0.978 44 H 0.039 0.961 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.148 10.111 5.991 18.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 O -0.252 6.252 4 C 0.381 3.619 5 O -0.349 6.349 6 C 0.011 3.989 7 N -0.170 5.170 8 C -0.026 4.026 9 C -0.217 4.217 10 C -0.057 4.057 11 N -0.131 5.131 12 C -0.076 4.076 13 C -0.099 4.099 14 C 0.138 3.862 15 N -0.198 5.198 16 C -0.062 4.062 17 C -0.242 4.242 18 C 0.075 3.925 19 C -0.558 4.558 20 H 0.081 0.919 21 C -0.143 4.143 22 N -0.524 5.524 23 Si 0.725 3.275 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 N -0.203 5.203 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.176 0.824 34 H 0.197 0.803 35 H 0.090 0.910 36 H 0.132 0.868 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.040 0.960 44 H 0.057 0.943 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.875 9.200 5.599 17.564 hybrid contribution 1.220 0.156 0.000 1.230 sum -12.655 9.356 5.600 16.704 Atomic orbital electron populations 1.21778 0.92547 1.02696 1.03633 1.23079 0.95354 0.80186 1.02818 1.86632 1.22741 1.31817 1.84044 1.19890 0.80826 0.87240 0.73967 1.90902 1.60399 1.40636 1.42994 1.20736 0.85744 0.90540 1.01891 1.67685 1.39280 0.97491 1.12569 1.20079 0.89024 0.91935 1.01513 1.21405 0.99230 0.87411 1.13608 1.22056 0.83179 0.98507 1.01939 1.43568 1.07077 1.03260 1.59191 1.22384 0.82524 0.99481 1.03233 1.19715 0.96672 0.85414 1.08091 1.19545 0.91652 0.84403 0.90626 1.60121 0.97576 1.41753 1.20360 1.22160 1.02237 0.96700 0.85056 1.22378 1.01422 1.01281 0.99126 1.19859 0.93298 0.83767 0.95601 1.21093 0.94866 0.99852 1.39987 0.91913 1.24964 0.98653 0.94957 0.95680 1.70005 1.36263 1.04789 1.41345 0.86466 0.84665 0.78292 0.78088 1.19727 1.21025 1.21025 1.68448 1.11635 1.24629 1.15610 0.91453 0.91399 0.90338 0.91022 0.91121 0.82388 0.80255 0.91042 0.86824 0.90031 0.88173 0.92575 0.90499 0.92708 0.93574 0.96003 0.94294 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.29 37.16 0.38 -0.96 16 2 C 0.06 0.75 6.19 37.16 0.23 0.98 16 3 O -0.34 -5.60 10.00 -40.40 -0.40 -6.00 16 4 C 0.54 10.83 7.98 34.86 0.28 11.10 16 5 O -0.47 -10.46 16.64 -19.19 -0.32 -10.78 16 6 C 0.28 5.89 7.59 -157.02 -1.19 4.70 16 7 N -0.45 -8.63 10.19 -8.05 -0.08 -8.71 16 8 C 0.11 1.96 7.57 -83.15 -0.63 1.33 16 9 C -0.19 -2.36 11.08 -37.76 -0.42 -2.78 16 10 C 0.07 0.76 11.28 -16.79 -0.19 0.57 16 11 N -0.45 -5.92 3.16 -121.56 -0.38 -6.30 16 12 C 0.06 0.68 9.54 59.85 0.57 1.25 16 13 C 0.02 0.29 6.69 -83.73 -0.56 -0.27 16 14 C 0.39 7.98 4.60 -154.80 -0.71 7.27 16 15 N -0.48 -10.00 3.13 -174.29 -0.55 -10.54 16 16 C 0.06 1.14 5.32 -3.82 -0.02 1.12 16 17 C -0.18 -3.32 9.28 37.16 0.34 -2.98 16 18 C 0.20 5.16 3.83 -4.98 -0.02 5.15 16 19 C -0.52 -14.03 8.61 -34.44 -0.30 -14.32 16 20 H 0.06 1.61 7.34 -52.49 -0.39 1.23 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 23 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 N -0.48 -10.88 8.20 -10.31 -0.08 -10.96 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.16 1.54 8.06 -52.48 -0.42 1.11 16 34 H 0.18 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.07 0.63 7.56 -51.93 -0.39 0.24 16 36 H 0.11 1.54 6.38 -51.93 -0.33 1.21 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 1.80 7.08 -51.93 -0.37 1.43 16 39 H 0.06 0.83 6.24 -51.93 -0.32 0.50 16 40 H 0.08 1.60 6.54 -51.93 -0.34 1.26 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.89 6.60 -51.93 -0.34 0.55 16 43 H 0.02 0.62 6.04 -51.93 -0.31 0.31 16 44 H 0.04 1.16 7.80 -51.93 -0.40 0.76 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -34.91 373.75 -8.94 -43.85 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.14 Total: -0.17 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: -2.33 Total: 13.74 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: -0.36 Total: -62.38 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.72 Total: -16.78 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.91 -8.94 -43.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.090 kcal (2) G-P(sol) polarization free energy of solvation -34.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds