Wall clock time and date at job start Tue Mar 31 2020 17:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.47269 * 2 1 4 4 C 1.34664 * 116.99956 * 179.97438 * 3 2 1 5 5 O 1.21406 * 120.00502 * 0.02562 * 4 3 2 6 6 C 1.48287 * 119.99738 * 180.02562 * 4 3 2 7 7 N 1.32222 * 118.89293 * 359.97438 * 6 4 3 8 8 C 1.33116 * 120.41555 * 179.72075 * 7 6 4 9 9 C 1.46046 * 134.87618 * 179.97438 * 8 7 6 10 10 C 1.34557 * 106.97277 * 180.02562 * 9 8 7 11 11 N 1.36468 * 109.93541 * 359.97438 * 10 9 8 12 12 C 1.46504 * 125.04748 * 179.97438 * 11 10 9 13 13 C 1.37160 * 109.91076 * 0.02562 * 11 10 9 14 14 C 1.40151 * 134.51406 * 180.02562 * 13 11 10 15 15 N 1.38590 * 120.67053 * 359.94472 * 14 13 11 16 16 C 1.46903 * 110.99917 * 79.32675 * 15 14 13 17 17 C 1.52996 * 109.47359 * 60.19571 * 16 15 14 18 18 C 1.46901 * 110.99848 * 203.27532 * 15 14 13 19 19 C 1.50698 * 109.47172 * 164.46065 * 18 15 14 20 20 H 1.08002 * 119.99902 * 4.61413 * 19 18 15 21 21 C 1.37875 * 119.99971 * 184.60913 * 19 18 15 22 22 N 1.31514 * 120.00221 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99984 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46853 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47034 * 119.99949 * 23 21 19 26 26 H 1.48496 * 109.47167 * 240.00041 * 23 21 19 27 27 N 1.32676 * 118.64976 * 180.02562 * 14 13 11 28 28 H 1.09000 * 109.47183 * 299.99629 * 1 2 3 29 29 H 1.09003 * 109.47016 * 60.00045 * 1 2 3 30 30 H 1.08997 * 109.47220 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47183 * 240.00371 * 2 1 3 32 32 H 1.08997 * 109.47436 * 120.00524 * 2 1 3 33 33 H 1.08003 * 126.51263 * 359.97438 * 9 8 7 34 34 H 1.08003 * 125.02908 * 179.97438 * 10 9 8 35 35 H 1.08995 * 109.47022 * 85.98288 * 12 11 10 36 36 H 1.08997 * 109.47079 * 205.98445 * 12 11 10 37 37 H 1.09005 * 109.46821 * 325.97994 * 12 11 10 38 38 H 1.08994 * 109.46869 * 180.19941 * 16 15 14 39 39 H 1.09000 * 109.46744 * 300.19473 * 16 15 14 40 40 H 1.09003 * 109.47230 * 65.63677 * 17 16 15 41 41 H 1.09000 * 109.47203 * 185.63800 * 17 16 15 42 42 H 1.09004 * 109.47385 * 305.64409 * 17 16 15 43 43 H 1.09000 * 109.47139 * 284.46286 * 18 15 14 44 44 H 1.09006 * 109.47167 * 44.46040 * 18 15 14 45 45 H 0.97003 * 120.00241 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3490 1.5454 0.0005 5 8 4.0887 0.5826 0.0005 6 6 3.9158 2.9156 0.0011 7 7 3.0902 3.9485 0.0006 8 6 3.5661 5.1916 0.0067 9 6 2.9680 6.5240 0.0078 10 6 3.9812 7.4094 0.0149 11 7 5.1758 6.7495 0.0191 12 6 6.4921 7.3926 0.0266 13 6 4.9611 5.3948 0.0141 14 6 5.7944 4.2679 0.0156 15 7 7.1731 4.4082 0.0225 16 6 7.6647 4.7112 1.3732 17 6 7.2869 3.5712 2.3211 18 6 7.8269 3.2094 -0.5190 19 6 9.2618 3.5270 -0.8526 20 1 9.6703 4.4972 -0.6111 21 6 10.0531 2.5791 -1.4660 22 7 9.5556 1.3978 -1.7605 23 14 11.8319 2.9726 -1.8789 24 1 12.1453 4.3585 -1.4471 25 1 12.7263 2.0205 -1.1727 26 1 12.0383 2.8516 -3.3445 27 7 5.2364 3.0642 0.0086 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.9129 6.7547 0.0028 34 1 3.8661 8.4833 0.0170 35 1 6.7821 7.6146 1.0535 36 1 7.2261 6.7230 -0.4216 37 1 6.4473 8.3186 -0.5467 38 1 8.7490 4.8197 1.3494 39 1 7.2143 5.6398 1.7240 40 1 7.8169 2.6647 2.0287 41 1 7.5624 3.8402 3.3409 42 1 6.2122 3.3965 2.2691 43 1 7.7945 2.4114 0.2228 44 1 7.3067 2.8880 -1.4214 45 1 10.1124 0.7308 -2.1917 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:16 Heat of formation + Delta-G solvation = 4.373036 kcal Electronic energy + Delta-G solvation = -29307.294778 eV Core-core repulsion = 25326.060813 eV Total energy + Delta-G solvation = -3981.233964 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.21038 -41.57755 -40.20757 -38.94822 -37.77519 -35.00584 -34.21694 -33.16009 -32.46545 -31.62826 -31.06414 -28.69877 -27.96542 -26.16895 -25.09628 -24.96763 -23.76119 -22.57271 -22.13703 -21.00618 -19.59145 -19.09048 -18.33495 -18.06803 -17.90002 -17.52061 -17.23188 -17.18642 -16.49877 -15.98255 -15.64414 -15.47698 -15.11907 -14.82660 -14.60630 -14.44675 -14.11250 -13.96701 -13.84151 -13.65324 -13.34686 -13.25879 -13.07724 -12.96754 -12.88222 -12.72304 -12.57976 -12.55121 -12.46798 -12.20174 -12.05006 -11.87759 -11.70486 -11.60552 -11.40282 -10.66420 -10.38851 -10.13591 -9.63449 -8.90544 -8.19324 -6.33354 -0.67537 -0.13622 1.09088 1.14861 1.41452 1.42820 1.55944 1.61167 1.72065 2.35598 2.59185 2.71675 2.80713 3.13842 3.26733 3.50607 3.61883 3.87514 3.96357 4.03800 4.07774 4.13254 4.17156 4.29305 4.38217 4.45874 4.53462 4.63146 4.73147 4.76873 4.83244 4.91262 4.95796 5.00904 5.01274 5.09516 5.18604 5.25324 5.29887 5.36463 5.56013 5.66386 5.83920 5.95181 6.03886 6.21147 6.37982 6.42409 6.80551 6.99715 7.36361 8.92192 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009664 B = 0.004516 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.713357 B = 6198.183929 C = 8413.581075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.047 3.953 3 O -0.333 6.333 4 C 0.545 3.455 5 O -0.509 6.509 6 C 0.249 3.751 7 N -0.448 5.448 8 C 0.088 3.912 9 C -0.198 4.198 10 C 0.113 3.887 11 N -0.445 5.445 12 C 0.057 3.943 13 C 0.009 3.991 14 C 0.360 3.640 15 N -0.470 5.470 16 C 0.066 3.934 17 C -0.174 4.174 18 C 0.226 3.774 19 C -0.524 4.524 20 H 0.080 0.920 21 C -0.002 4.002 22 N -0.936 5.936 23 Si 0.976 3.024 24 H -0.249 1.249 25 H -0.282 1.282 26 H -0.284 1.284 27 N -0.527 5.527 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.188 0.812 34 H 0.246 0.754 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.036 0.964 41 H 0.090 0.910 42 H 0.027 0.973 43 H -0.016 1.016 44 H -0.015 1.015 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.779 15.056 6.728 22.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 O -0.248 6.248 4 C 0.386 3.614 5 O -0.395 6.395 6 C -0.021 4.021 7 N -0.167 5.167 8 C -0.052 4.052 9 C -0.223 4.223 10 C -0.017 4.017 11 N -0.125 5.125 12 C -0.082 4.082 13 C -0.108 4.108 14 C 0.113 3.887 15 N -0.190 5.190 16 C -0.060 4.060 17 C -0.233 4.233 18 C 0.101 3.899 19 C -0.562 4.562 20 H 0.098 0.902 21 C -0.200 4.200 22 N -0.576 5.576 23 Si 0.800 3.200 24 H -0.173 1.173 25 H -0.208 1.208 26 H -0.210 1.210 27 N -0.250 5.250 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.126 0.874 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.205 0.795 34 H 0.262 0.738 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.142 0.858 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.055 0.945 41 H 0.109 0.891 42 H 0.047 0.953 43 H 0.002 0.998 44 H 0.004 0.996 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.544 14.197 6.356 21.295 hybrid contribution 1.248 -1.207 -0.193 1.746 sum -13.296 12.991 6.163 19.584 Atomic orbital electron populations 1.21810 0.89113 1.04718 1.03964 1.23537 0.97897 0.78355 1.02869 1.86632 1.20684 1.34311 1.83192 1.20011 0.81608 0.86859 0.72960 1.90856 1.61486 1.41765 1.45372 1.20772 0.85568 0.91373 1.04341 1.67688 1.38904 0.98222 1.11901 1.20975 0.89844 0.92842 1.01516 1.21901 1.01462 0.84817 1.14087 1.23096 0.80793 1.00772 0.97068 1.43995 1.09342 1.01538 1.57639 1.22634 0.80398 0.99907 1.05297 1.19568 0.96199 0.86904 1.08148 1.19627 0.91438 0.85311 0.92368 1.60100 0.98089 1.38611 1.22162 1.22299 1.02383 0.97836 0.83470 1.22270 0.99659 0.99973 1.01365 1.19214 0.93191 0.85019 0.92523 1.21476 0.95131 1.00352 1.39219 0.90205 1.26041 1.03938 0.94538 0.95455 1.70201 1.38380 1.06313 1.42725 0.85234 0.78089 0.79104 0.77538 1.17265 1.20785 1.20988 1.68279 1.12966 1.26568 1.17197 0.90940 0.91173 0.87386 0.91310 0.90936 0.79453 0.73834 0.88589 0.90129 0.85761 0.88274 0.88619 0.94461 0.89105 0.95346 0.99770 0.99634 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 10.29 71.98 0.74 -1.66 16 2 C 0.05 1.24 6.19 71.98 0.45 1.68 16 3 O -0.33 -11.80 10.00 -55.73 -0.56 -12.36 16 4 C 0.54 23.86 7.98 70.50 0.56 24.42 16 5 O -0.51 -25.31 16.64 20.14 0.34 -24.98 16 6 C 0.25 11.28 7.59 137.55 1.04 12.33 16 7 N -0.45 -17.74 10.19 -179.39 -1.83 -19.56 16 8 C 0.09 2.97 7.57 41.64 0.32 3.29 16 9 C -0.20 -4.08 11.08 23.45 0.26 -3.82 16 10 C 0.11 1.62 11.28 83.13 0.94 2.55 16 11 N -0.45 -9.93 3.16 -538.52 -1.70 -11.63 16 12 C 0.06 0.94 9.54 127.77 1.22 2.16 16 13 C 0.01 0.31 6.69 39.44 0.26 0.57 16 14 C 0.36 15.63 4.60 133.37 0.61 16.25 16 15 N -0.47 -20.52 3.13 -705.32 -2.21 -22.73 16 16 C 0.07 2.32 5.32 86.30 0.46 2.78 16 17 C -0.17 -6.60 9.28 71.98 0.67 -5.93 16 18 C 0.23 12.72 3.83 85.56 0.33 13.05 16 19 C -0.52 -29.30 8.61 25.60 0.22 -29.08 16 20 H 0.08 4.09 7.34 -2.91 -0.02 4.07 16 21 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 22 N -0.94 -59.52 13.29 21.45 0.28 -59.24 16 23 Si 0.98 44.04 29.54 68.60 2.03 46.07 16 24 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 27 N -0.53 -26.08 8.20 -186.53 -1.53 -27.61 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.19 2.71 8.06 -2.91 -0.02 2.68 16 34 H 0.25 0.36 8.06 -2.91 -0.02 0.34 16 35 H 0.10 1.16 7.56 -2.39 -0.02 1.14 16 36 H 0.08 1.98 6.38 -2.39 -0.02 1.96 16 37 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.10 3.52 7.08 -2.39 -0.02 3.50 16 39 H 0.10 2.61 6.24 -2.39 -0.01 2.60 16 40 H 0.04 1.68 6.54 -2.39 -0.02 1.66 16 41 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.03 1.16 6.60 -2.39 -0.02 1.14 16 43 H -0.02 -0.98 6.04 -2.39 -0.01 -0.99 16 44 H -0.01 -0.97 7.80 -2.38 -0.02 -0.98 16 45 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -87.82 373.75 4.38 -83.44 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 1.02 Total: 9.65 kcal Atomic # 6 Polarization: 30.42 SS G_CDS: 8.54 Total: 38.96 kcal Atomic # 7 Polarization: -133.80 SS G_CDS: -6.98 Total: -140.78 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -0.22 Total: -37.34 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -87.82 4.38 -83.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.809 kcal (2) G-P(sol) polarization free energy of solvation -87.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds