Wall clock time and date at job start Tue Mar 31 2020 16:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47188 * 2 1 4 4 C 1.53004 * 109.47015 * 240.00371 * 2 1 3 5 5 S 1.81397 * 109.47151 * 64.99565 * 4 2 1 6 6 C 1.81404 * 101.92183 * 180.02562 * 5 4 2 7 7 O 1.42097 * 108.58363 * 294.49050 * 5 4 2 8 8 O 1.42101 * 108.57621 * 65.51726 * 5 4 2 9 9 C 1.50696 * 109.47229 * 120.00435 * 2 1 3 10 10 O 1.21278 * 120.00163 * 120.00270 * 9 2 1 11 11 N 1.34775 * 120.00002 * 299.71816 * 9 2 1 12 12 C 1.46504 * 120.00040 * 0.28152 * 11 9 2 13 13 C 1.46499 * 120.00245 * 180.27714 * 11 9 2 14 14 C 1.53047 * 109.46012 * 240.03164 * 13 11 9 15 15 C 1.53195 * 109.31025 * 178.59899 * 14 13 11 16 16 N 1.46927 * 108.76642 * 54.65701 * 15 14 13 17 17 C 1.36935 * 120.63203 * 126.40260 * 16 15 14 18 18 H 1.08000 * 119.99863 * 331.82040 * 17 16 15 19 19 C 1.38819 * 119.99866 * 151.82312 * 17 16 15 20 20 N 1.31617 * 119.99901 * 343.08202 * 19 17 16 21 21 Si 1.86793 * 119.99696 * 163.07881 * 19 17 16 22 22 H 1.48504 * 109.47303 * 60.00062 * 21 19 17 23 23 H 1.48506 * 109.46870 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47472 * 299.99966 * 21 19 17 25 25 C 1.46934 * 118.73673 * 306.38205 * 16 15 14 26 26 C 1.53034 * 109.46203 * 119.97418 * 13 11 9 27 27 H 1.09004 * 109.46581 * 299.99589 * 1 2 3 28 28 H 1.09000 * 109.47329 * 59.99664 * 1 2 3 29 29 H 1.08998 * 109.47575 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47057 * 185.00073 * 4 2 1 31 31 H 1.08999 * 109.46985 * 305.00150 * 4 2 1 32 32 H 1.08996 * 109.46955 * 60.00194 * 6 5 4 33 33 H 1.09002 * 109.47024 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47178 * 300.00297 * 6 5 4 35 35 H 1.09001 * 109.47450 * 89.99528 * 12 11 9 36 36 H 1.09001 * 109.47142 * 209.99928 * 12 11 9 37 37 H 1.09005 * 109.46784 * 329.99897 * 12 11 9 38 38 H 1.09002 * 109.46020 * 359.97438 * 13 11 9 39 39 H 1.08997 * 109.49516 * 298.56085 * 14 13 11 40 40 H 1.08997 * 109.49355 * 58.66234 * 14 13 11 41 41 H 1.08997 * 109.60168 * 294.86606 * 15 14 13 42 42 H 1.08995 * 109.69859 * 174.50160 * 15 14 13 43 43 H 0.96993 * 119.99683 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.58201 * 293.82161 * 25 16 15 45 45 H 1.08996 * 109.70256 * 173.46649 * 25 16 15 46 46 H 1.08997 * 109.50288 * 301.34223 * 26 13 11 47 47 H 1.09008 * 109.50025 * 61.43506 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 16 1.5600 0.2157 -2.7266 6 6 2.2537 -0.8027 -4.0580 7 8 0.1432 0.1968 -2.8343 8 8 2.2380 1.4644 -2.7109 9 6 2.0323 -0.7105 1.2304 10 8 2.7296 -1.6965 1.1190 11 7 1.7114 -0.2468 2.4545 12 6 0.8692 0.9443 2.5890 13 6 2.2048 -0.9339 3.6506 14 6 1.0177 -1.4136 4.4891 15 6 1.5371 -2.1620 5.7208 16 7 2.4731 -1.2902 6.4438 17 6 2.2980 -1.0319 7.7771 18 1 1.3072 -1.0559 8.2062 19 6 3.3941 -0.7393 8.5771 20 7 4.6087 -1.0281 8.1605 21 14 3.1450 0.0642 10.2449 22 1 2.3032 -0.8139 11.0968 23 1 4.4633 0.2708 10.8967 24 1 2.4705 1.3751 10.0670 25 6 3.6008 -0.7010 5.7089 26 6 3.0584 0.0306 4.4771 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1262 -0.7994 -1.2057 31 1 1.6053 -1.7197 -1.2953 32 1 1.8124 -1.7986 -4.0211 33 1 2.0321 -0.3421 -5.0207 34 1 3.3337 -0.8789 -3.9320 35 1 -0.1786 0.6461 2.6273 36 1 1.1304 1.4723 3.5061 37 1 1.0290 1.6008 1.7336 38 1 2.8091 -1.7911 3.3537 39 1 0.4266 -0.5550 4.8074 40 1 0.3973 -2.0822 3.8923 41 1 2.0518 -3.0700 5.4069 42 1 0.7025 -2.4215 6.3720 43 1 5.3745 -0.8240 8.7197 44 1 4.2838 -1.4900 5.3939 45 1 4.1287 0.0048 6.3501 46 1 3.8905 0.3902 3.8718 47 1 2.4477 0.8755 4.7955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265202021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:01 Heat of formation + Delta-G solvation = -76.257510 kcal Electronic energy + Delta-G solvation = -27769.660159 eV Core-core repulsion = 23888.080992 eV Total energy + Delta-G solvation = -3881.579167 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -40.33773 -37.63790 -37.35781 -36.45061 -35.31576 -34.83367 -32.39420 -30.32377 -30.11829 -29.63083 -27.81811 -26.91782 -25.41788 -23.73802 -22.22600 -21.62980 -19.30411 -19.23288 -18.89845 -17.72781 -16.86075 -16.73303 -16.50827 -16.02065 -15.80679 -15.41382 -14.83242 -14.65524 -14.07036 -13.77281 -13.65133 -13.62797 -13.54645 -13.36873 -13.04263 -12.98051 -12.92653 -12.59507 -12.48536 -12.34743 -12.22144 -11.97027 -11.62445 -11.56722 -11.47418 -11.39283 -11.13765 -10.92285 -10.82749 -10.73688 -10.35926 -10.24467 -10.11429 -9.80346 -9.70727 -9.45966 -8.56922 -8.34425 -6.71181 -5.81358 -3.24246 -0.42787 2.32756 2.62683 2.97819 3.28781 3.36966 3.42843 3.43606 3.61927 4.03553 4.30830 4.34845 4.41410 4.47426 4.55892 4.78682 5.02238 5.13246 5.20158 5.25272 5.27856 5.36561 5.39778 5.46940 5.49295 5.57233 5.63289 5.70843 5.84132 5.96888 6.05400 6.18382 6.30523 6.45360 6.53328 6.59789 6.74316 6.85266 6.93252 7.30772 7.48875 7.63182 7.76927 8.20898 8.42384 9.18364 9.81501 10.38509 11.27448 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033197 B = 0.002396 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.257926 B =11681.141501 C =11766.225925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.097 4.097 3 H 0.110 0.890 4 C -0.590 4.590 5 S 2.418 3.582 6 C -0.656 4.656 7 O -0.935 6.935 8 O -0.939 6.939 9 C 0.523 3.477 10 O -0.541 6.541 11 N -0.604 5.604 12 C 0.069 3.931 13 C 0.144 3.856 14 C -0.137 4.137 15 C 0.148 3.852 16 N -0.592 5.592 17 C -0.254 4.254 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.903 5.903 21 Si 0.903 3.097 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.174 3.826 26 C -0.146 4.146 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.019 0.981 42 H 0.057 0.943 43 H 0.255 0.745 44 H 0.020 0.980 45 H 0.091 0.909 46 H 0.051 0.949 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.034 2.636 -22.623 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.120 4.120 3 H 0.128 0.872 4 C -0.719 4.719 5 S 2.601 3.399 6 C -0.805 4.805 7 O -0.933 6.933 8 O -0.936 6.936 9 C 0.309 3.691 10 O -0.419 6.419 11 N -0.335 5.335 12 C -0.074 4.074 13 C 0.042 3.958 14 C -0.177 4.177 15 C 0.021 3.979 16 N -0.315 5.315 17 C -0.384 4.384 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.733 3.267 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.048 3.952 26 C -0.186 4.186 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.037 0.963 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.109 0.891 46 H 0.070 0.930 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.973 2.921 -22.638 23.867 hybrid contribution 0.456 -0.353 0.880 1.052 sum -6.518 2.568 -21.759 22.859 Atomic orbital electron populations 1.22550 0.91587 1.04799 1.05719 1.20965 0.98510 1.00621 0.91882 0.87187 1.30198 1.12930 1.14275 1.14543 1.07891 0.76165 0.77259 0.78598 1.30245 1.14100 1.16739 1.19430 1.93583 1.27346 1.86913 1.85418 1.93613 1.76255 1.37822 1.85937 1.20166 0.80193 0.84561 0.84203 1.90676 1.38299 1.26568 1.86323 1.48097 1.50565 1.28830 1.06022 1.21996 0.94603 0.87443 1.03377 1.21233 0.95782 0.95986 0.82757 1.22359 0.96913 1.00565 0.97876 1.20863 0.93629 0.91972 0.91475 1.44080 1.28764 1.52342 1.06285 1.19134 0.92271 1.42836 0.84155 0.91686 1.25064 0.95622 1.01133 0.97777 1.70017 0.97664 1.48986 1.38003 0.86361 0.76779 0.79706 0.83856 1.20864 1.21633 1.21039 1.20749 0.89065 0.95958 0.89440 1.22574 0.98509 0.98816 0.98723 0.89712 0.89094 0.91053 0.84077 0.84211 0.85147 0.85211 0.85169 0.92096 0.90170 0.91171 0.88669 0.92026 0.92999 0.96281 0.92440 0.93507 0.96194 0.89130 0.93049 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 8.47 37.16 0.31 -1.39 16 2 C -0.10 -0.99 1.92 -91.77 -0.18 -1.16 16 3 H 0.11 0.97 7.40 -51.93 -0.38 0.58 16 4 C -0.59 -4.56 4.61 37.16 0.17 -4.39 16 5 S 2.42 16.71 5.15 -107.50 -0.55 16.16 16 6 C -0.66 -2.37 10.62 101.05 1.07 -1.30 16 7 O -0.94 -8.99 15.46 -57.83 -0.89 -9.88 16 8 O -0.94 -9.95 18.10 -57.83 -1.05 -10.99 16 9 C 0.52 7.39 7.08 -10.99 -0.08 7.32 16 10 O -0.54 -9.47 15.25 5.56 0.08 -9.39 16 11 N -0.60 -8.54 2.76 -173.88 -0.48 -9.02 16 12 C 0.07 0.74 7.89 59.85 0.47 1.21 16 13 C 0.14 2.50 2.48 -67.89 -0.17 2.33 16 14 C -0.14 -2.35 5.34 -26.61 -0.14 -2.49 16 15 C 0.15 3.07 6.52 -3.71 -0.02 3.04 16 16 N -0.59 -14.59 2.99 -172.31 -0.52 -15.11 16 17 C -0.25 -6.86 9.58 -15.06 -0.14 -7.01 16 18 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 19 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 20 N -0.90 -26.01 11.19 55.49 0.62 -25.39 16 21 Si 0.90 21.41 29.59 -169.99 -5.03 16.38 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 26 C -0.15 -2.75 5.31 -26.61 -0.14 -2.89 16 27 H 0.08 0.68 4.55 -51.93 -0.24 0.44 16 28 H 0.09 0.79 5.40 -51.93 -0.28 0.51 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.14 1.00 7.95 -51.93 -0.41 0.58 16 31 H 0.14 0.91 8.14 -51.92 -0.42 0.48 16 32 H 0.13 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 34 H 0.13 0.30 8.14 -51.92 -0.42 -0.12 16 35 H 0.06 0.57 6.97 -51.93 -0.36 0.21 16 36 H 0.08 0.91 6.46 -51.93 -0.34 0.57 16 37 H 0.07 0.59 5.99 -51.93 -0.31 0.27 16 38 H 0.10 1.88 6.90 -51.93 -0.36 1.52 16 39 H 0.06 1.03 7.72 -51.93 -0.40 0.63 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 2.38 6.07 -51.93 -0.31 2.07 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.06 1.08 6.72 -51.92 -0.35 0.73 16 LS Contribution 371.38 15.07 5.60 5.60 Total: -1.00 -36.31 371.38 -8.68 -44.98 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -7.51 Total: -0.70 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 1.05 Total: -2.64 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -0.37 Total: -49.51 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -1.86 Total: -30.26 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Atomic # 16 Polarization: 16.71 SS G_CDS: -0.55 Total: 16.16 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.31 -8.68 -44.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265202021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.276 kcal (2) G-P(sol) polarization free energy of solvation -36.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds