Wall clock time and date at job start Tue Mar 31 2020 16:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47188 * 2 1 4 4 C 1.53004 * 109.47015 * 240.00371 * 2 1 3 5 5 S 1.81397 * 109.47151 * 64.99565 * 4 2 1 6 6 C 1.81404 * 101.92183 * 180.02562 * 5 4 2 7 7 O 1.42097 * 108.58363 * 294.49050 * 5 4 2 8 8 O 1.42101 * 108.57621 * 65.51726 * 5 4 2 9 9 C 1.50696 * 109.47229 * 120.00435 * 2 1 3 10 10 O 1.21278 * 120.00163 * 120.00270 * 9 2 1 11 11 N 1.34775 * 120.00002 * 299.71816 * 9 2 1 12 12 C 1.46504 * 120.00040 * 0.28152 * 11 9 2 13 13 C 1.46499 * 120.00245 * 180.27714 * 11 9 2 14 14 C 1.53047 * 109.46012 * 240.03164 * 13 11 9 15 15 C 1.53195 * 109.31025 * 178.59899 * 14 13 11 16 16 N 1.46927 * 108.76642 * 54.65701 * 15 14 13 17 17 C 1.36935 * 120.63203 * 126.40260 * 16 15 14 18 18 H 1.08000 * 119.99863 * 331.82040 * 17 16 15 19 19 C 1.38819 * 119.99866 * 151.82312 * 17 16 15 20 20 N 1.31617 * 119.99901 * 343.08202 * 19 17 16 21 21 Si 1.86793 * 119.99696 * 163.07881 * 19 17 16 22 22 H 1.48504 * 109.47303 * 60.00062 * 21 19 17 23 23 H 1.48506 * 109.46870 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47472 * 299.99966 * 21 19 17 25 25 C 1.46934 * 118.73673 * 306.38205 * 16 15 14 26 26 C 1.53034 * 109.46203 * 119.97418 * 13 11 9 27 27 H 1.09004 * 109.46581 * 299.99589 * 1 2 3 28 28 H 1.09000 * 109.47329 * 59.99664 * 1 2 3 29 29 H 1.08998 * 109.47575 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47057 * 185.00073 * 4 2 1 31 31 H 1.08999 * 109.46985 * 305.00150 * 4 2 1 32 32 H 1.08996 * 109.46955 * 60.00194 * 6 5 4 33 33 H 1.09002 * 109.47024 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47178 * 300.00297 * 6 5 4 35 35 H 1.09001 * 109.47450 * 89.99528 * 12 11 9 36 36 H 1.09001 * 109.47142 * 209.99928 * 12 11 9 37 37 H 1.09005 * 109.46784 * 329.99897 * 12 11 9 38 38 H 1.09002 * 109.46020 * 359.97438 * 13 11 9 39 39 H 1.08997 * 109.49516 * 298.56085 * 14 13 11 40 40 H 1.08997 * 109.49355 * 58.66234 * 14 13 11 41 41 H 1.08997 * 109.60168 * 294.86606 * 15 14 13 42 42 H 1.08995 * 109.69859 * 174.50160 * 15 14 13 43 43 H 0.96993 * 119.99683 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.58201 * 293.82161 * 25 16 15 45 45 H 1.08996 * 109.70256 * 173.46649 * 25 16 15 46 46 H 1.08997 * 109.50288 * 301.34223 * 26 13 11 47 47 H 1.09008 * 109.50025 * 61.43506 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 16 1.5600 0.2157 -2.7266 6 6 2.2537 -0.8027 -4.0580 7 8 0.1432 0.1968 -2.8343 8 8 2.2380 1.4644 -2.7109 9 6 2.0323 -0.7105 1.2304 10 8 2.7296 -1.6965 1.1190 11 7 1.7114 -0.2468 2.4545 12 6 0.8692 0.9443 2.5890 13 6 2.2048 -0.9339 3.6506 14 6 1.0177 -1.4136 4.4891 15 6 1.5371 -2.1620 5.7208 16 7 2.4731 -1.2902 6.4438 17 6 2.2980 -1.0319 7.7771 18 1 1.3072 -1.0559 8.2062 19 6 3.3941 -0.7393 8.5771 20 7 4.6087 -1.0281 8.1605 21 14 3.1450 0.0642 10.2449 22 1 2.3032 -0.8139 11.0968 23 1 4.4633 0.2708 10.8967 24 1 2.4705 1.3751 10.0670 25 6 3.6008 -0.7010 5.7089 26 6 3.0584 0.0306 4.4771 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1262 -0.7994 -1.2057 31 1 1.6053 -1.7197 -1.2953 32 1 1.8124 -1.7986 -4.0211 33 1 2.0321 -0.3421 -5.0207 34 1 3.3337 -0.8789 -3.9320 35 1 -0.1786 0.6461 2.6273 36 1 1.1304 1.4723 3.5061 37 1 1.0290 1.6008 1.7336 38 1 2.8091 -1.7911 3.3537 39 1 0.4266 -0.5550 4.8074 40 1 0.3973 -2.0822 3.8923 41 1 2.0518 -3.0700 5.4069 42 1 0.7025 -2.4215 6.3720 43 1 5.3745 -0.8240 8.7197 44 1 4.2838 -1.4900 5.3939 45 1 4.1287 0.0048 6.3501 46 1 3.8905 0.3902 3.8718 47 1 2.4477 0.8755 4.7955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265202021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:00 Heat of formation + Delta-G solvation = -102.641871 kcal Electronic energy + Delta-G solvation = -27770.804271 eV Core-core repulsion = 23888.080992 eV Total energy + Delta-G solvation = -3882.723279 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.47184 -39.16570 -38.00524 -37.11486 -36.64908 -35.83763 -34.12872 -31.93812 -31.38177 -30.49417 -28.59312 -27.80835 -27.10978 -25.01716 -23.90343 -23.09696 -20.74383 -20.11295 -19.81254 -18.78722 -18.49681 -17.65756 -17.16412 -16.96401 -16.70299 -16.61346 -16.39319 -15.69374 -15.46522 -15.34669 -14.95341 -14.71553 -14.29765 -14.20353 -14.07219 -13.93022 -13.88955 -13.83521 -13.62298 -13.21805 -13.10536 -13.01539 -13.01227 -12.68404 -12.59191 -12.56397 -12.33643 -12.25191 -12.07373 -12.02432 -11.97997 -11.90916 -11.55693 -11.47225 -11.33395 -10.65397 -10.56823 -9.61392 -8.72812 -7.88775 -5.35069 -0.94262 1.47986 1.50106 1.54736 1.57085 1.84451 1.93972 2.51154 2.69682 3.12027 3.27225 3.30070 3.54487 3.64360 3.73045 3.87950 4.02963 4.07552 4.12378 4.20410 4.27037 4.32945 4.42839 4.44696 4.57861 4.63506 4.67594 4.71059 4.81153 4.83203 4.92658 4.98054 5.00710 5.02853 5.04732 5.12316 5.27855 5.30712 5.43871 5.56395 5.62586 5.67931 6.37303 6.40613 7.10434 7.12498 7.82528 8.35684 9.18330 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033197 B = 0.002396 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.257926 B =11681.141501 C =11766.225925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.098 4.098 3 H 0.124 0.876 4 C -0.597 4.597 5 S 2.434 3.566 6 C -0.640 4.640 7 O -0.965 6.965 8 O -0.980 6.980 9 C 0.518 3.482 10 O -0.581 6.581 11 N -0.604 5.604 12 C 0.060 3.940 13 C 0.153 3.847 14 C -0.120 4.120 15 C 0.143 3.857 16 N -0.608 5.608 17 C -0.263 4.263 18 H 0.071 0.929 19 C -0.052 4.052 20 N -0.938 5.938 21 Si 0.970 3.030 22 H -0.275 1.275 23 H -0.296 1.296 24 H -0.275 1.275 25 C 0.182 3.818 26 C -0.129 4.129 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.145 0.855 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.006 0.994 42 H 0.063 0.937 43 H 0.250 0.750 44 H -0.011 1.011 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.843 3.359 -24.336 26.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.120 4.120 3 H 0.141 0.859 4 C -0.725 4.725 5 S 2.620 3.380 6 C -0.793 4.793 7 O -0.962 6.962 8 O -0.977 6.977 9 C 0.306 3.694 10 O -0.461 6.461 11 N -0.335 5.335 12 C -0.082 4.082 13 C 0.050 3.950 14 C -0.160 4.160 15 C 0.017 3.983 16 N -0.332 5.332 17 C -0.393 4.393 18 H 0.089 0.911 19 C -0.247 4.247 20 N -0.584 5.584 21 Si 0.798 3.202 22 H -0.201 1.201 23 H -0.223 1.223 24 H -0.201 1.201 25 C 0.056 3.944 26 C -0.169 4.169 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.163 0.837 31 H 0.169 0.831 32 H 0.171 0.829 33 H 0.161 0.839 34 H 0.167 0.833 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.024 0.976 42 H 0.082 0.918 43 H 0.059 0.941 44 H 0.007 0.993 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.844 3.681 -24.344 26.161 hybrid contribution 1.038 -0.678 1.335 1.822 sum -7.806 3.002 -23.009 24.482 Atomic orbital electron populations 1.22582 0.90536 1.05003 1.06482 1.21049 0.99350 1.00988 0.90643 0.85859 1.30285 1.13337 1.14865 1.14035 1.07242 0.75177 0.76800 0.78800 1.30105 1.15127 1.16757 1.17314 1.93539 1.29323 1.87447 1.85881 1.93560 1.76729 1.40775 1.86667 1.20897 0.79326 0.84150 0.85054 1.90657 1.40054 1.28465 1.86920 1.48049 1.50834 1.29596 1.04997 1.22302 0.95042 0.86408 1.04417 1.20807 0.95375 0.94882 0.83935 1.22143 0.96809 1.00841 0.96183 1.21006 0.92905 0.91542 0.92837 1.44331 1.29328 1.53354 1.06165 1.19505 0.92500 1.42024 0.85272 0.91126 1.25858 0.95353 1.02073 1.01418 1.70188 0.98348 1.50521 1.39317 0.85308 0.76320 0.78966 0.79643 1.20072 1.22278 1.20105 1.20500 0.88676 0.94601 0.90671 1.22299 0.99031 0.98750 0.96806 0.88608 0.88679 0.91177 0.83659 0.83082 0.82906 0.83877 0.83337 0.90026 0.90630 0.88535 0.91519 0.90838 0.90966 0.97566 0.91843 0.94081 0.99321 0.92218 0.92510 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.95 8.47 71.98 0.61 -2.34 16 2 C -0.10 -1.81 1.92 -11.54 -0.02 -1.83 16 3 H 0.12 1.91 7.40 -2.38 -0.02 1.90 16 4 C -0.60 -8.19 4.61 71.98 0.33 -7.86 16 5 S 2.43 29.12 5.15 -56.49 -0.29 28.83 16 6 C -0.64 -2.47 10.62 113.37 1.20 -1.27 16 7 O -0.96 -16.92 15.46 -127.37 -1.97 -18.89 16 8 O -0.98 -19.60 18.10 -127.37 -2.31 -21.91 16 9 C 0.52 14.01 7.08 87.66 0.62 14.63 16 10 O -0.58 -20.23 15.25 -3.02 -0.05 -20.27 16 11 N -0.60 -16.11 2.76 -822.43 -2.27 -18.38 16 12 C 0.06 1.11 7.89 127.77 1.01 2.12 16 13 C 0.15 5.25 2.48 45.02 0.11 5.36 16 14 C -0.12 -3.95 5.34 30.68 0.16 -3.78 16 15 C 0.14 5.95 6.52 86.36 0.56 6.52 16 16 N -0.61 -30.53 2.99 -699.08 -2.09 -32.62 16 17 C -0.26 -14.30 9.58 84.04 0.81 -13.50 16 18 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16 19 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 20 N -0.94 -55.89 11.19 21.65 0.24 -55.65 16 21 Si 0.97 44.44 29.59 68.60 2.03 46.46 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 25 C 0.18 8.93 5.30 86.36 0.46 9.39 16 26 C -0.13 -4.87 5.31 30.67 0.16 -4.71 16 27 H 0.10 1.24 4.55 -2.39 -0.01 1.23 16 28 H 0.09 1.46 5.40 -2.39 -0.01 1.45 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.15 1.86 7.95 -2.39 -0.02 1.84 16 31 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.15 0.00 8.14 -2.39 -0.02 -0.02 16 33 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.15 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.08 1.21 6.97 -2.39 -0.02 1.20 16 36 H 0.08 1.51 6.46 -2.39 -0.02 1.49 16 37 H 0.10 1.30 5.99 -2.38 -0.01 1.28 16 38 H 0.07 2.70 6.90 -2.39 -0.02 2.68 16 39 H 0.07 2.28 7.72 -2.39 -0.02 2.26 16 40 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 43 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 44 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 45 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 46 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.07 2.49 6.72 -2.38 -0.02 2.48 16 Total: -1.00 -80.91 371.38 0.69 -80.21 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.96 Total: 11.94 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 6.43 Total: 0.27 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -4.12 Total: -106.65 kcal Atomic # 8 Polarization: -56.75 SS G_CDS: -4.32 Total: -61.07 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 29.12 SS G_CDS: -0.29 Total: 28.83 kcal Total: -80.91 0.69 -80.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265202021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.428 kcal (2) G-P(sol) polarization free energy of solvation -80.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds