Wall clock time and date at job start Tue Mar 31 2020 18:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47207 * 2 1 4 4 C 1.34780 * 119.99963 * 84.66209 * 3 2 1 5 5 O 1.21352 * 119.99868 * 173.11165 * 4 3 2 6 6 C 1.49366 * 119.99683 * 353.10943 * 4 3 2 7 7 O 1.21356 * 120.00061 * 359.69188 * 6 4 3 8 8 N 1.34779 * 119.99836 * 179.69421 * 6 4 3 9 9 C 1.39112 * 120.00056 * 185.37530 * 8 6 4 10 10 C 1.39710 * 119.57546 * 174.84623 * 9 8 6 11 11 C 1.38660 * 119.48917 * 179.97438 * 10 9 8 12 12 C 1.38347 * 118.67229 * 359.97438 * 11 10 9 13 13 C 1.40601 * 119.13535 * 0.02562 * 12 11 10 14 14 C 1.41329 * 119.78146 * 179.97438 * 13 12 11 15 15 H 1.08007 * 120.00489 * 0.02562 * 14 13 12 16 16 C 1.40033 * 119.99947 * 180.02562 * 14 13 12 17 17 N 1.30739 * 119.99579 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00385 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46856 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47577 * 119.99294 * 18 16 14 21 21 H 1.48497 * 109.46994 * 239.99741 * 18 16 14 22 22 N 1.31932 * 119.57987 * 354.57056 * 9 8 6 23 23 C 1.46496 * 120.00092 * 264.65758 * 3 2 1 24 24 H 1.09005 * 110.29056 * 354.90430 * 23 3 2 25 25 C 1.54256 * 110.32587 * 232.77426 * 23 3 2 26 26 C 1.54383 * 105.06239 * 241.10610 * 25 23 3 27 27 N 1.48564 * 104.59144 * 23.84947 * 26 25 23 28 28 C 1.48551 * 104.22264 * 320.51905 * 27 26 25 29 29 H 1.08997 * 109.46834 * 299.99678 * 1 2 3 30 30 H 1.08994 * 109.47344 * 59.99854 * 1 2 3 31 31 H 1.09002 * 109.46824 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47310 * 240.00243 * 2 1 3 33 33 H 1.08994 * 109.47344 * 120.00146 * 2 1 3 34 34 H 0.96997 * 119.99849 * 5.37791 * 8 6 4 35 35 H 1.07994 * 120.25950 * 359.97438 * 10 9 8 36 36 H 1.08001 * 120.66233 * 179.97438 * 11 10 9 37 37 H 1.07997 * 120.42745 * 179.97438 * 12 11 10 38 38 H 0.97007 * 119.99910 * 180.02562 * 17 16 14 39 39 H 1.08996 * 110.32594 * 0.02562 * 25 23 3 40 40 H 1.09003 * 110.32447 * 122.21216 * 25 23 3 41 41 H 1.08994 * 110.41638 * 142.63155 * 26 25 23 42 42 H 1.09000 * 110.41138 * 265.07522 * 26 25 23 43 43 H 1.00897 * 110.99447 * 80.07756 * 27 26 25 44 44 H 1.09007 * 110.41397 * 280.70018 * 28 27 26 45 45 H 1.09001 * 110.41181 * 158.26290 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1406 2.0528 1.1622 5 8 2.6609 3.1490 1.1777 6 6 1.6356 1.4477 2.4310 7 8 1.1102 0.3539 2.4145 8 7 1.7634 2.1165 3.5941 9 6 1.3959 1.5085 4.7901 10 6 1.6321 2.1669 5.9995 11 6 1.2647 1.5595 7.1905 12 6 0.6705 0.3110 7.1432 13 6 0.4596 -0.2999 5.8945 14 6 -0.1457 -1.5754 5.8303 15 1 -0.4450 -2.0775 6.7385 16 6 -0.3574 -2.1882 4.5891 17 7 0.0044 -1.5802 3.4898 18 14 -1.1581 -3.8738 4.5041 19 1 -1.4718 -4.3426 5.8779 20 1 -2.4113 -3.7872 3.7121 21 1 -0.2274 -4.8317 3.8551 22 7 0.8238 0.3199 4.7676 23 6 2.3739 2.0324 -1.2632 24 1 2.3016 1.3231 -2.0876 25 6 3.7993 2.6164 -1.1823 26 6 3.6232 4.1355 -1.3937 27 7 2.2194 4.4091 -0.9914 28 6 1.4563 3.2478 -1.5167 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.1116 3.0218 3.5972 35 1 2.0974 3.1415 6.0067 36 1 1.4388 2.0512 8.1362 37 1 0.3734 -0.1882 8.0536 38 1 -0.1426 -2.0045 2.6299 39 1 4.2347 2.4182 -0.2029 40 1 4.4263 2.1950 -1.9682 41 1 4.3152 4.6903 -0.7603 42 1 3.7754 4.3936 -2.4417 43 1 2.1367 4.4721 0.0122 44 1 1.2694 3.3670 -2.5840 45 1 0.5168 3.1342 -0.9758 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353360600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:00 Heat of formation + Delta-G solvation = 21.187238 kcal Electronic energy + Delta-G solvation = -30054.113193 eV Core-core repulsion = 26073.608347 eV Total energy + Delta-G solvation = -3980.504846 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.95098 -39.16849 -37.75482 -36.96310 -35.74760 -34.10868 -33.07561 -30.65837 -30.40590 -29.32998 -29.16001 -28.22274 -25.82811 -24.73603 -23.00510 -22.11204 -21.61125 -21.30406 -20.29260 -18.89490 -17.87795 -17.06902 -16.64195 -16.47136 -16.04675 -15.54811 -15.19683 -14.74587 -14.56062 -14.49774 -14.08373 -14.04248 -13.69332 -13.30703 -13.21267 -12.89649 -12.61871 -12.31245 -12.09496 -12.05434 -12.01147 -11.66595 -11.51616 -11.28757 -11.23641 -11.06495 -11.02555 -10.76717 -10.71412 -10.57790 -10.53312 -9.99266 -9.77060 -9.18138 -9.11729 -8.80518 -8.24503 -8.06569 -7.35322 -7.08837 -6.26840 -4.48684 1.80792 2.62809 2.76772 3.03724 3.10867 3.14120 3.19147 3.80883 3.85853 3.97996 4.29764 4.61808 4.77689 4.82716 4.93301 5.06246 5.17022 5.24300 5.38578 5.46907 5.57466 5.70458 5.75940 5.85363 5.89418 5.93239 5.96836 6.03251 6.13035 6.23761 6.40249 6.49769 6.53731 6.68046 6.74239 6.76353 6.78880 7.13317 7.17612 7.39873 7.47789 7.50394 7.73016 7.85895 8.02916 8.16614 8.33942 8.59386 8.89541 8.98067 10.10064 10.36443 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.004311 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.179930 B = 6493.746636 C = 8140.037399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.102 3.898 3 N -0.581 5.581 4 C 0.510 3.490 5 O -0.536 6.536 6 C 0.462 3.538 7 O -0.375 6.375 8 N -0.638 5.638 9 C 0.368 3.632 10 C -0.349 4.349 11 C -0.036 4.036 12 C -0.301 4.301 13 C 0.272 3.728 14 C -0.423 4.423 15 H 0.083 0.917 16 C 0.061 3.939 17 N -0.661 5.661 18 Si 0.895 3.105 19 H -0.262 1.262 20 H -0.275 1.275 21 H -0.275 1.275 22 N -0.473 5.473 23 C 0.109 3.891 24 H 0.097 0.903 25 C -0.160 4.160 26 C 0.054 3.946 27 N -0.671 5.671 28 C 0.032 3.968 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.410 0.590 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.270 0.730 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.358 0.642 44 H 0.083 0.917 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.898 4.127 -11.183 12.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.019 4.019 3 N -0.314 5.314 4 C 0.295 3.705 5 O -0.414 6.414 6 C 0.239 3.761 7 O -0.238 6.238 8 N -0.286 5.286 9 C 0.130 3.870 10 C -0.374 4.374 11 C -0.060 4.060 12 C -0.324 4.324 13 C 0.147 3.853 14 C -0.454 4.454 15 H 0.101 0.899 16 C -0.167 4.167 17 N -0.280 5.280 18 Si 0.720 3.280 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.200 1.200 22 N -0.192 5.192 23 C 0.004 3.996 24 H 0.115 0.885 25 C -0.200 4.200 26 C -0.076 4.076 27 N -0.306 5.306 28 C -0.099 4.099 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.128 0.872 34 H 0.246 0.754 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.183 0.817 44 H 0.102 0.898 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.437 3.895 -12.779 13.795 hybrid contribution 0.295 -0.680 1.271 1.472 sum 3.732 3.215 -11.508 12.518 Atomic orbital electron populations 1.22074 0.94952 1.02599 1.01813 1.22038 0.95709 0.80300 1.03873 1.48058 1.63265 1.14989 1.05091 1.20870 0.78900 0.85244 0.85526 1.90412 1.43321 1.21054 1.86618 1.20094 0.83931 0.87758 0.84352 1.91158 1.33158 1.15846 1.83630 1.42999 1.63265 1.17942 1.04417 1.18541 0.93604 0.91963 0.82881 1.20516 1.21586 1.03245 0.92098 1.20585 0.95243 0.94452 0.95722 1.21660 1.14009 0.98417 0.98301 1.18354 0.88949 0.92408 0.85606 1.19614 1.32582 0.99642 0.93554 0.89893 1.26131 0.95705 0.98906 0.95997 1.70322 1.26465 1.33459 0.97754 0.86463 0.79388 0.82675 0.79483 1.18600 1.20035 1.20050 1.68632 1.15861 1.05704 1.29011 1.22677 0.95226 0.96214 0.85473 0.88497 1.23192 0.95911 0.97875 1.03009 1.22762 0.91101 0.93290 1.00478 1.63363 1.06963 1.38957 1.21347 1.23380 0.97142 0.88241 1.01174 0.90659 0.94175 0.91649 0.91633 0.87164 0.75424 0.88798 0.88417 0.88427 0.91831 0.90237 0.91327 0.91066 0.91224 0.81713 0.89850 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.62 37.16 0.36 -1.84 16 2 C 0.10 1.38 5.71 -4.04 -0.02 1.36 16 3 N -0.58 -7.92 2.44 -165.08 -0.40 -8.33 16 4 C 0.51 8.25 6.88 -11.62 -0.08 8.17 16 5 O -0.54 -8.65 10.84 5.49 0.06 -8.59 16 6 C 0.46 8.96 7.54 -11.62 -0.09 8.87 16 7 O -0.37 -8.07 7.11 5.49 0.04 -8.03 16 8 N -0.64 -12.66 5.37 -11.83 -0.06 -12.72 16 9 C 0.37 8.68 7.42 -155.09 -1.15 7.53 16 10 C -0.35 -7.67 9.96 -38.88 -0.39 -8.06 16 11 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 12 C -0.30 -7.29 9.83 -38.65 -0.38 -7.67 16 13 C 0.27 7.27 6.55 -85.00 -0.56 6.71 16 14 C -0.42 -11.04 9.14 -37.73 -0.34 -11.38 16 15 H 0.08 2.05 7.85 -52.48 -0.41 1.64 16 16 C 0.06 1.50 5.50 -17.34 -0.10 1.41 16 17 N -0.66 -16.48 8.99 55.55 0.50 -15.98 16 18 Si 0.90 18.11 29.56 -169.99 -5.02 13.09 16 19 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 22 N -0.47 -12.47 5.74 -10.28 -0.06 -12.53 16 23 C 0.11 1.24 3.58 -66.55 -0.24 1.00 16 24 H 0.10 0.90 7.75 -51.93 -0.40 0.50 16 25 C -0.16 -1.81 5.97 -25.35 -0.15 -1.96 16 26 C 0.05 0.62 7.13 -2.18 -0.02 0.60 16 27 N -0.67 -8.81 7.49 -109.66 -0.82 -9.63 16 28 C 0.03 0.37 6.74 -2.19 -0.01 0.36 16 29 H 0.07 1.32 6.32 -51.93 -0.33 0.99 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.71 7.80 -51.93 -0.41 0.31 16 33 H 0.11 1.82 5.90 -51.93 -0.31 1.51 16 34 H 0.41 7.02 8.18 -40.82 -0.33 6.68 16 35 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 38 H 0.27 6.17 8.29 -40.82 -0.34 5.83 16 39 H 0.08 1.09 6.50 -51.93 -0.34 0.75 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.36 5.35 5.66 -39.29 -0.22 5.13 16 44 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 45 H 0.07 0.95 8.05 -51.93 -0.42 0.54 16 LS Contribution 355.88 15.07 5.36 5.36 Total: -1.00 -28.19 355.88 -10.08 -38.27 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -6.10 Total: 15.21 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -3.57 Total: 3.90 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.85 Total: -59.20 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.10 Total: -16.63 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.02 Total: 13.09 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.19 -10.08 -38.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353360600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.460 kcal (2) G-P(sol) polarization free energy of solvation -28.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds