Wall clock time and date at job start Tue Mar 31 2020 18:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47207 * 2 1 4 4 C 1.34780 * 119.99963 * 84.66209 * 3 2 1 5 5 O 1.21352 * 119.99868 * 173.11165 * 4 3 2 6 6 C 1.49366 * 119.99683 * 353.10943 * 4 3 2 7 7 O 1.21356 * 120.00061 * 359.69188 * 6 4 3 8 8 N 1.34779 * 119.99836 * 179.69421 * 6 4 3 9 9 C 1.39112 * 120.00056 * 185.37530 * 8 6 4 10 10 C 1.39710 * 119.57546 * 174.84623 * 9 8 6 11 11 C 1.38660 * 119.48917 * 179.97438 * 10 9 8 12 12 C 1.38347 * 118.67229 * 359.97438 * 11 10 9 13 13 C 1.40601 * 119.13535 * 0.02562 * 12 11 10 14 14 C 1.41329 * 119.78146 * 179.97438 * 13 12 11 15 15 H 1.08007 * 120.00489 * 0.02562 * 14 13 12 16 16 C 1.40033 * 119.99947 * 180.02562 * 14 13 12 17 17 N 1.30739 * 119.99579 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00385 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46856 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47577 * 119.99294 * 18 16 14 21 21 H 1.48497 * 109.46994 * 239.99741 * 18 16 14 22 22 N 1.31932 * 119.57987 * 354.57056 * 9 8 6 23 23 C 1.46496 * 120.00092 * 264.65758 * 3 2 1 24 24 H 1.09005 * 110.29056 * 354.90430 * 23 3 2 25 25 C 1.54256 * 110.32587 * 232.77426 * 23 3 2 26 26 C 1.54383 * 105.06239 * 241.10610 * 25 23 3 27 27 N 1.48564 * 104.59144 * 23.84947 * 26 25 23 28 28 C 1.48551 * 104.22264 * 320.51905 * 27 26 25 29 29 H 1.08997 * 109.46834 * 299.99678 * 1 2 3 30 30 H 1.08994 * 109.47344 * 59.99854 * 1 2 3 31 31 H 1.09002 * 109.46824 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47310 * 240.00243 * 2 1 3 33 33 H 1.08994 * 109.47344 * 120.00146 * 2 1 3 34 34 H 0.96997 * 119.99849 * 5.37791 * 8 6 4 35 35 H 1.07994 * 120.25950 * 359.97438 * 10 9 8 36 36 H 1.08001 * 120.66233 * 179.97438 * 11 10 9 37 37 H 1.07997 * 120.42745 * 179.97438 * 12 11 10 38 38 H 0.97007 * 119.99910 * 180.02562 * 17 16 14 39 39 H 1.08996 * 110.32594 * 0.02562 * 25 23 3 40 40 H 1.09003 * 110.32447 * 122.21216 * 25 23 3 41 41 H 1.08994 * 110.41638 * 142.63155 * 26 25 23 42 42 H 1.09000 * 110.41138 * 265.07522 * 26 25 23 43 43 H 1.00897 * 110.99447 * 80.07756 * 27 26 25 44 44 H 1.09007 * 110.41397 * 280.70018 * 28 27 26 45 45 H 1.09001 * 110.41181 * 158.26290 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1406 2.0528 1.1622 5 8 2.6609 3.1490 1.1777 6 6 1.6356 1.4477 2.4310 7 8 1.1102 0.3539 2.4145 8 7 1.7634 2.1165 3.5941 9 6 1.3959 1.5085 4.7901 10 6 1.6321 2.1669 5.9995 11 6 1.2647 1.5595 7.1905 12 6 0.6705 0.3110 7.1432 13 6 0.4596 -0.2999 5.8945 14 6 -0.1457 -1.5754 5.8303 15 1 -0.4450 -2.0775 6.7385 16 6 -0.3574 -2.1882 4.5891 17 7 0.0044 -1.5802 3.4898 18 14 -1.1581 -3.8738 4.5041 19 1 -1.4718 -4.3426 5.8779 20 1 -2.4113 -3.7872 3.7121 21 1 -0.2274 -4.8317 3.8551 22 7 0.8238 0.3199 4.7676 23 6 2.3739 2.0324 -1.2632 24 1 2.3016 1.3231 -2.0876 25 6 3.7993 2.6164 -1.1823 26 6 3.6232 4.1355 -1.3937 27 7 2.2194 4.4091 -0.9914 28 6 1.4563 3.2478 -1.5167 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.1116 3.0218 3.5972 35 1 2.0974 3.1415 6.0067 36 1 1.4388 2.0512 8.1362 37 1 0.3734 -0.1882 8.0536 38 1 -0.1426 -2.0045 2.6299 39 1 4.2347 2.4182 -0.2029 40 1 4.4263 2.1950 -1.9682 41 1 4.3152 4.6903 -0.7603 42 1 3.7754 4.3936 -2.4417 43 1 2.1367 4.4721 0.0122 44 1 1.2694 3.3670 -2.5840 45 1 0.5168 3.1342 -0.9758 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353360600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:59 Heat of formation + Delta-G solvation = 3.408755 kcal Electronic energy + Delta-G solvation = -30054.884126 eV Core-core repulsion = 26073.608347 eV Total energy + Delta-G solvation = -3981.275779 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.20229 -40.68629 -39.30239 -38.21549 -36.98902 -35.74982 -34.80343 -32.25351 -31.72390 -31.05387 -30.15885 -29.26948 -27.61247 -26.15102 -24.30245 -23.54103 -23.04307 -22.49389 -21.69810 -20.33134 -19.45480 -18.48272 -18.14356 -17.55172 -17.41798 -16.84292 -16.44816 -16.28867 -16.25641 -15.78965 -15.56277 -15.35661 -15.17553 -14.71955 -14.43312 -14.38904 -13.94517 -13.76295 -13.69307 -13.21461 -13.04185 -12.89703 -12.74227 -12.71251 -12.54527 -12.52019 -12.33646 -12.20597 -12.12974 -11.98288 -11.75083 -11.63503 -11.42768 -10.86943 -10.35937 -10.16897 -9.90958 -9.27377 -9.12611 -8.87696 -8.07047 -6.40341 0.38626 1.02876 1.27214 1.37512 1.43951 1.54003 1.55979 2.28585 2.37313 2.46888 2.99739 3.36649 3.37954 3.73768 3.91461 4.03185 4.12439 4.19254 4.33392 4.35371 4.45487 4.47989 4.56503 4.62932 4.68830 4.82357 4.84618 4.91158 4.94567 4.98022 4.98513 5.02645 5.11762 5.15973 5.28206 5.43720 5.54301 5.65104 5.75691 5.86297 5.91098 5.98352 6.13699 6.27810 6.35856 6.56716 6.75753 6.94093 7.06422 7.35116 8.26295 8.57144 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.004311 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.179930 B = 6493.746636 C = 8140.037399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.107 3.893 3 N -0.569 5.569 4 C 0.515 3.485 5 O -0.537 6.537 6 C 0.449 3.551 7 O -0.396 6.396 8 N -0.635 5.635 9 C 0.350 3.650 10 C -0.347 4.347 11 C -0.033 4.033 12 C -0.325 4.325 13 C 0.239 3.761 14 C -0.460 4.460 15 H 0.083 0.917 16 C 0.018 3.982 17 N -0.684 5.684 18 Si 0.970 3.030 19 H -0.261 1.261 20 H -0.270 1.270 21 H -0.269 1.269 22 N -0.500 5.500 23 C 0.107 3.893 24 H 0.131 0.869 25 C -0.155 4.155 26 C 0.054 3.946 27 N -0.684 5.684 28 C 0.033 3.967 29 H 0.034 0.966 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.421 0.579 35 H 0.125 0.875 36 H 0.136 0.864 37 H 0.105 0.895 38 H 0.275 0.725 39 H 0.052 0.948 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.090 0.910 43 H 0.345 0.655 44 H 0.107 0.893 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.449 4.242 -13.270 14.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 N -0.302 5.302 4 C 0.298 3.702 5 O -0.415 6.415 6 C 0.227 3.773 7 O -0.259 6.259 8 N -0.285 5.285 9 C 0.112 3.888 10 C -0.372 4.372 11 C -0.057 4.057 12 C -0.348 4.348 13 C 0.114 3.886 14 C -0.491 4.491 15 H 0.101 0.899 16 C -0.208 4.208 17 N -0.303 5.303 18 Si 0.792 3.208 19 H -0.185 1.185 20 H -0.195 1.195 21 H -0.194 1.194 22 N -0.220 5.220 23 C 0.003 3.997 24 H 0.149 0.851 25 C -0.195 4.195 26 C -0.076 4.076 27 N -0.318 5.318 28 C -0.098 4.098 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.259 0.741 35 H 0.143 0.857 36 H 0.153 0.847 37 H 0.123 0.877 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.108 0.892 43 H 0.167 0.833 44 H 0.126 0.874 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.010 4.046 -14.900 15.952 hybrid contribution 0.179 -0.585 1.900 1.996 sum 4.189 3.460 -13.000 14.090 Atomic orbital electron populations 1.21940 0.95326 1.02350 1.00777 1.21960 0.95241 0.80152 1.04120 1.48079 1.62129 1.14873 1.05126 1.20208 0.79473 0.85287 0.85206 1.90430 1.43623 1.20934 1.86553 1.20784 0.83515 0.87679 0.85313 1.91167 1.33715 1.16793 1.84268 1.43001 1.63206 1.18409 1.03856 1.18986 0.93337 0.91754 0.84756 1.20933 1.20466 1.04234 0.91571 1.21010 0.93672 0.93618 0.97433 1.21838 1.15373 0.99741 0.97883 1.18819 0.89739 0.93286 0.86793 1.19897 1.34281 1.00393 0.94489 0.89879 1.26871 0.96153 1.02534 0.95255 1.70442 1.26773 1.34913 0.98136 0.85334 0.78351 0.77778 0.79341 1.18482 1.19501 1.19383 1.68606 1.16958 1.07049 1.29355 1.22973 0.95127 0.96821 0.84768 0.85111 1.23154 0.95989 0.97930 1.02438 1.22835 0.89996 0.93322 1.01417 1.63413 1.08221 1.39873 1.20298 1.23445 0.96253 0.87873 1.02199 0.94715 0.91935 0.91555 0.87776 0.90431 0.74110 0.85663 0.84660 0.87664 0.91423 0.92910 0.88653 0.91865 0.89168 0.83266 0.87441 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.62 71.98 0.69 -3.33 16 2 C 0.11 2.76 5.71 86.38 0.49 3.26 16 3 N -0.57 -14.81 2.44 -794.55 -1.94 -16.74 16 4 C 0.52 16.66 6.88 87.24 0.60 17.26 16 5 O -0.54 -17.24 10.84 -3.25 -0.04 -17.27 16 6 C 0.45 17.96 7.54 87.24 0.66 18.62 16 7 O -0.40 -17.76 7.11 -3.27 -0.02 -17.79 16 8 N -0.63 -25.76 5.37 -309.71 -1.66 -27.42 16 9 C 0.35 16.83 7.42 133.30 0.99 17.82 16 10 C -0.35 -15.04 9.96 22.73 0.23 -14.81 16 11 C -0.03 -1.44 10.15 22.40 0.23 -1.22 16 12 C -0.33 -16.10 9.83 22.87 0.22 -15.88 16 13 C 0.24 13.27 6.55 40.20 0.26 13.54 16 14 C -0.46 -24.97 9.14 23.47 0.21 -24.75 16 15 H 0.08 4.29 7.85 -2.91 -0.02 4.26 16 16 C 0.02 0.92 5.50 85.29 0.47 1.39 16 17 N -0.68 -35.34 8.99 21.84 0.20 -35.14 16 18 Si 0.97 38.02 29.56 68.60 2.03 40.05 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 20 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 21 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 22 N -0.50 -27.37 5.74 -186.43 -1.07 -28.43 16 23 C 0.11 2.11 3.58 45.89 0.16 2.27 16 24 H 0.13 1.78 7.75 -2.38 -0.02 1.76 16 25 C -0.16 -3.10 5.97 31.49 0.19 -2.91 16 26 C 0.05 1.11 7.13 86.45 0.62 1.73 16 27 N -0.68 -16.87 7.49 -500.86 -3.75 -20.62 16 28 C 0.03 0.70 6.74 86.45 0.58 1.28 16 29 H 0.03 1.24 6.32 -2.39 -0.02 1.23 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.10 1.92 7.80 -2.39 -0.02 1.90 16 33 H 0.08 2.60 5.90 -2.39 -0.01 2.58 16 34 H 0.42 14.53 8.18 -92.71 -0.76 13.77 16 35 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 36 H 0.14 4.74 8.06 -2.91 -0.02 4.72 16 37 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 38 H 0.27 12.97 8.29 -92.70 -0.77 12.20 16 39 H 0.05 1.37 6.50 -2.39 -0.02 1.35 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.34 10.08 5.66 -89.70 -0.51 9.58 16 44 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 45 H 0.06 1.41 8.05 -2.39 -0.02 1.39 16 Total: -1.00 -64.33 355.88 0.13 -64.20 By element: Atomic # 1 Polarization: 45.14 SS G_CDS: -0.22 Total: 44.91 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 6.61 Total: 14.26 kcal Atomic # 7 Polarization: -120.13 SS G_CDS: -8.22 Total: -128.36 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.06 Total: -35.06 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -64.33 0.13 -64.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353360600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.606 kcal (2) G-P(sol) polarization free energy of solvation -64.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds