Wall clock time and date at job start Tue Mar 31 2020 17:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47174 * 2 1 4 4 C 1.46497 * 120.00187 * 85.94287 * 3 2 1 5 5 C 1.50703 * 109.47093 * 63.84874 * 4 3 2 6 6 H 1.08005 * 119.99915 * 358.30907 * 5 4 3 7 7 C 1.37877 * 120.00415 * 178.31228 * 5 4 3 8 8 N 1.31511 * 120.00190 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99612 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47279 * 89.99664 * 9 7 5 11 11 H 1.48498 * 109.47152 * 209.99988 * 9 7 5 12 12 H 1.48503 * 109.47028 * 329.99969 * 9 7 5 13 13 S 1.65603 * 119.99521 * 265.94614 * 3 2 1 14 14 O 1.42097 * 106.40178 * 24.26474 * 13 3 2 15 15 O 1.42098 * 106.39983 * 157.19231 * 13 3 2 16 16 N 1.65599 * 107.21513 * 270.72830 * 13 3 2 17 17 C 1.46500 * 120.00480 * 61.98171 * 16 13 3 18 18 C 1.53003 * 112.85255 * 279.87368 * 17 16 13 19 19 H 1.08999 * 110.32861 * 59.15318 * 18 17 16 20 20 C 1.54474 * 110.36971 * 296.90554 * 18 17 16 21 21 C 1.54508 * 104.06258 * 217.18608 * 20 18 17 22 22 C 1.54481 * 104.06068 * 0.02562 * 21 20 18 23 23 O 1.44418 * 110.37170 * 181.52145 * 18 17 16 24 24 C 1.53780 * 113.61638 * 148.67285 * 17 16 13 25 25 C 1.54049 * 86.98544 * 270.84182 * 24 17 16 26 26 C 1.53776 * 87.07902 * 334.56674 * 25 24 17 27 27 H 1.08996 * 109.47430 * 300.00189 * 1 2 3 28 28 H 1.09000 * 109.46865 * 60.00261 * 1 2 3 29 29 H 1.09002 * 109.47365 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47382 * 239.99271 * 2 1 3 31 31 H 1.09005 * 109.47134 * 119.99371 * 2 1 3 32 32 H 1.08997 * 109.47295 * 183.84495 * 4 3 2 33 33 H 1.08997 * 109.47349 * 303.85172 * 4 3 2 34 34 H 0.97008 * 119.99670 * 179.97438 * 8 7 5 35 35 H 0.97010 * 119.99951 * 241.98405 * 16 13 3 36 36 H 1.09005 * 110.51106 * 335.83138 * 20 18 17 37 37 H 1.09004 * 110.51260 * 98.40440 * 20 18 17 38 38 H 1.09009 * 110.51053 * 118.64222 * 21 20 18 39 39 H 1.08997 * 110.51464 * 241.35237 * 21 20 18 40 40 H 1.08998 * 110.37188 * 142.80619 * 22 21 20 41 41 H 1.09005 * 110.36978 * 265.03279 * 22 21 20 42 42 H 1.09001 * 113.61643 * 25.43501 * 24 17 16 43 43 H 1.08998 * 113.61558 * 156.33555 * 24 17 16 44 44 H 1.08999 * 113.61916 * 220.01577 * 25 24 17 45 45 H 1.09000 * 113.68807 * 89.13094 * 25 24 17 46 46 H 1.08994 * 113.61465 * 270.88201 * 26 25 24 47 47 H 1.09002 * 113.69110 * 139.98404 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1779 2.1018 1.2655 5 6 3.2304 1.4209 2.1020 6 1 3.7109 0.5239 1.7401 7 6 3.5798 1.9429 3.3294 8 7 4.4979 1.3484 4.0596 9 14 2.7480 3.4939 3.9557 10 1 1.5380 3.1268 4.7342 11 1 3.6889 4.2428 4.8269 12 1 2.3560 4.3450 2.8036 13 16 2.3899 2.1280 -1.4306 14 8 1.6357 1.4658 -2.4366 15 8 2.3039 3.5255 -1.1880 16 7 3.9822 1.8064 -1.7523 17 6 4.4248 0.4241 -1.9509 18 6 4.6298 -0.3291 -0.6349 19 1 3.7019 -0.3523 -0.0634 20 6 5.7548 0.3309 0.1927 21 6 6.4859 -0.8610 0.8501 22 6 5.7165 -2.1001 0.3412 23 8 5.0987 -1.6707 -0.8913 24 6 5.6046 0.2894 -2.9280 25 6 4.5560 0.1712 -4.0503 26 6 3.5836 -0.3503 -2.9793 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8898 31 1 1.8933 -0.5138 0.8901 32 1 2.4828 3.1285 1.0631 33 1 1.2305 2.1037 1.8045 34 1 4.7440 1.7159 4.9229 35 1 4.6220 2.5334 -1.8091 36 1 6.4331 0.8837 -0.4572 37 1 5.3339 0.9895 0.9525 38 1 7.5258 -0.8975 0.5251 39 1 6.4265 -0.7935 1.9363 40 1 6.4052 -2.9240 0.1540 41 1 4.9568 -2.3983 1.0639 42 1 6.2199 1.1865 -2.9961 43 1 6.1915 -0.6174 -2.7815 44 1 4.8092 -0.5700 -4.8083 45 1 4.2619 1.1299 -4.4776 46 1 3.6189 -1.4316 -2.8468 47 1 2.5678 0.0300 -3.0875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365473563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:15 Heat of formation + Delta-G solvation = -90.794005 kcal Electronic energy + Delta-G solvation = -30573.849888 eV Core-core repulsion = 26691.640371 eV Total energy + Delta-G solvation = -3882.209517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.13631 -37.74476 -36.73783 -36.28165 -35.40121 -32.72819 -32.51358 -31.35618 -30.22252 -28.98593 -27.22629 -25.65705 -24.29644 -23.15514 -21.77737 -21.49508 -20.52928 -19.54897 -18.43359 -17.38997 -17.16284 -16.81472 -16.38837 -15.70857 -15.55324 -15.18827 -14.65695 -14.48556 -14.10681 -14.07664 -13.38962 -13.26899 -13.18680 -12.69342 -12.42535 -12.30183 -12.29291 -12.16175 -11.98669 -11.79436 -11.58772 -11.50168 -11.23913 -11.14559 -11.07894 -10.93507 -10.80892 -10.70663 -10.63688 -10.57287 -10.25501 -10.08278 -10.05024 -9.75726 -9.56698 -9.24929 -8.89804 -8.71146 -8.17296 -6.22205 -4.21833 1.12345 3.21272 3.24559 3.31881 3.36750 3.92514 4.26571 4.30734 4.55390 4.72536 4.86302 4.99940 5.06640 5.11046 5.27654 5.34868 5.37982 5.49757 5.62508 5.68604 5.74650 5.84380 5.88304 5.90920 6.02132 6.04436 6.05168 6.09014 6.14582 6.27009 6.30495 6.37716 6.48929 6.52160 6.59585 6.62394 6.64000 6.68108 6.83491 6.88671 7.04040 7.19163 7.31166 7.42062 7.54284 8.35277 8.80302 9.39057 10.88446 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011295 B = 0.007207 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.296298 B = 3884.383593 C = 5117.597769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 N -0.984 5.984 4 C 0.214 3.786 5 C -0.541 4.541 6 H 0.094 0.906 7 C 0.079 3.921 8 N -0.890 5.890 9 Si 0.862 3.138 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.260 1.260 13 S 2.784 3.216 14 O -0.985 6.985 15 O -0.985 6.985 16 N -1.099 6.099 17 C 0.160 3.840 18 C 0.062 3.938 19 H 0.095 0.905 20 C -0.152 4.152 21 C -0.150 4.150 22 C 0.049 3.951 23 O -0.375 6.375 24 C -0.124 4.124 25 C -0.134 4.134 26 C -0.176 4.176 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.026 0.974 34 H 0.265 0.735 35 H 0.415 0.585 36 H 0.058 0.942 37 H 0.117 0.883 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.098 0.902 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.096 0.904 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.474 -4.769 -10.008 11.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.825 5.825 4 C 0.090 3.910 5 C -0.580 4.580 6 H 0.112 0.888 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.689 3.311 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.185 1.185 13 S 2.793 3.207 14 O -0.968 6.968 15 O -0.970 6.970 16 N -0.857 5.857 17 C 0.070 3.930 18 C 0.003 3.997 19 H 0.113 0.887 20 C -0.189 4.189 21 C -0.188 4.188 22 C -0.028 4.028 23 O -0.294 6.294 24 C -0.163 4.163 25 C -0.171 4.171 26 C -0.214 4.214 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.249 0.751 36 H 0.077 0.923 37 H 0.135 0.865 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.116 0.884 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.114 0.886 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.825 -4.488 -10.553 11.498 hybrid contribution 0.417 1.044 1.173 1.625 sum 1.242 -3.444 -9.380 10.069 Atomic orbital electron populations 1.22186 0.96756 1.01618 1.02254 1.21169 0.93803 0.82527 1.02851 1.57494 1.78793 1.23342 1.22876 1.19585 0.97665 0.92678 0.81034 1.21490 1.21062 1.13257 1.02158 0.88845 1.24804 0.94604 0.96651 0.96398 1.69862 1.30727 1.39844 1.12332 0.87055 0.79890 0.84414 0.79775 1.20074 1.21099 1.18476 1.01837 0.72910 0.72782 0.73162 1.93444 1.69998 1.75910 1.57495 1.93582 1.86095 1.31393 1.85896 1.55575 1.29597 1.12219 1.88303 1.20861 0.98320 0.81096 0.92744 1.23505 0.99410 0.82114 0.94631 0.88730 1.23055 0.96710 0.98772 1.00352 1.22848 0.98927 0.94719 1.02296 1.23335 0.95956 0.97050 0.86472 1.88955 1.77154 1.29507 1.33738 1.23150 0.95702 1.02593 0.94873 1.22750 0.96902 1.01136 0.96358 1.23965 1.01908 1.01034 0.94533 0.92179 0.92577 0.92165 0.91341 0.89278 0.93456 0.95627 0.92535 0.75129 0.92287 0.86471 0.92107 0.89746 0.90006 0.92266 0.91543 0.88381 0.91643 0.90495 0.88587 0.86373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 10.24 37.16 0.38 -2.18 16 2 C 0.12 2.06 3.87 -4.04 -0.02 2.04 16 3 N -0.98 -18.60 2.37 -115.67 -0.27 -18.87 16 4 C 0.21 4.68 4.69 -5.19 -0.02 4.66 16 5 C -0.54 -12.93 8.03 -34.44 -0.28 -13.21 16 6 H 0.09 2.26 4.55 -52.48 -0.24 2.02 16 7 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 8 N -0.89 -23.90 13.96 55.43 0.77 -23.13 16 9 Si 0.86 19.90 27.50 -169.99 -4.67 15.23 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.26 -5.98 6.49 56.52 0.37 -5.61 16 13 S 2.78 51.12 6.03 -107.50 -0.65 50.47 16 14 O -0.99 -18.29 13.63 -57.17 -0.78 -19.07 16 15 O -0.99 -21.05 16.65 -57.17 -0.95 -22.00 16 16 N -1.10 -17.18 5.44 1.20 0.01 -17.17 16 17 C 0.16 2.38 0.76 -131.00 -0.10 2.28 16 18 C 0.06 1.01 2.83 -25.96 -0.07 0.94 16 19 H 0.10 1.68 2.79 -51.93 -0.14 1.53 16 20 C -0.15 -2.58 6.00 -25.17 -0.15 -2.73 16 21 C -0.15 -2.35 7.09 -25.16 -0.18 -2.53 16 22 C 0.05 0.71 7.63 37.93 0.29 1.00 16 23 O -0.37 -5.86 9.51 -35.23 -0.34 -6.20 16 24 C -0.12 -1.60 6.63 -25.78 -0.17 -1.77 16 25 C -0.13 -1.69 8.00 -25.78 -0.21 -1.90 16 26 C -0.18 -2.55 6.13 -25.92 -0.16 -2.71 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.86 8.06 -51.93 -0.42 0.44 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.07 6.11 -51.93 -0.32 0.75 16 31 H 0.09 1.57 6.91 -51.93 -0.36 1.21 16 32 H 0.05 1.10 5.78 -51.93 -0.30 0.80 16 33 H 0.03 0.56 7.66 -51.93 -0.40 0.16 16 34 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.41 5.76 8.92 -34.47 -0.31 5.45 16 36 H 0.06 0.92 7.36 -51.93 -0.38 0.54 16 37 H 0.12 2.41 5.62 -51.93 -0.29 2.12 16 38 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.10 1.27 7.34 -51.93 -0.38 0.89 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.10 1.35 7.45 -51.93 -0.39 0.97 16 47 H 0.12 1.90 4.56 -51.93 -0.24 1.66 16 LS Contribution 357.84 15.07 5.39 5.39 Total: -1.00 -28.22 357.84 -9.41 -37.63 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -7.14 Total: 11.91 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -0.78 Total: -14.19 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: 0.51 Total: -59.17 kcal Atomic # 8 Polarization: -45.20 SS G_CDS: -2.07 Total: -47.27 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.67 Total: 15.23 kcal Atomic # 16 Polarization: 51.12 SS G_CDS: -0.65 Total: 50.47 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.22 -9.41 -37.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365473563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.166 kcal (2) G-P(sol) polarization free energy of solvation -28.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds