Wall clock time and date at job start Tue Mar 31 2020 17:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47174 * 2 1 4 4 C 1.46497 * 120.00187 * 85.94287 * 3 2 1 5 5 C 1.50703 * 109.47093 * 63.84874 * 4 3 2 6 6 H 1.08005 * 119.99915 * 358.30907 * 5 4 3 7 7 C 1.37877 * 120.00415 * 178.31228 * 5 4 3 8 8 N 1.31511 * 120.00190 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99612 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47279 * 89.99664 * 9 7 5 11 11 H 1.48498 * 109.47152 * 209.99988 * 9 7 5 12 12 H 1.48503 * 109.47028 * 329.99969 * 9 7 5 13 13 S 1.65603 * 119.99521 * 265.94614 * 3 2 1 14 14 O 1.42097 * 106.40178 * 24.26474 * 13 3 2 15 15 O 1.42098 * 106.39983 * 157.19231 * 13 3 2 16 16 N 1.65599 * 107.21513 * 270.72830 * 13 3 2 17 17 C 1.46500 * 120.00480 * 61.98171 * 16 13 3 18 18 C 1.53003 * 112.85255 * 279.87368 * 17 16 13 19 19 H 1.08999 * 110.32861 * 59.15318 * 18 17 16 20 20 C 1.54474 * 110.36971 * 296.90554 * 18 17 16 21 21 C 1.54508 * 104.06258 * 217.18608 * 20 18 17 22 22 C 1.54481 * 104.06068 * 0.02562 * 21 20 18 23 23 O 1.44418 * 110.37170 * 181.52145 * 18 17 16 24 24 C 1.53780 * 113.61638 * 148.67285 * 17 16 13 25 25 C 1.54049 * 86.98544 * 270.84182 * 24 17 16 26 26 C 1.53776 * 87.07902 * 334.56674 * 25 24 17 27 27 H 1.08996 * 109.47430 * 300.00189 * 1 2 3 28 28 H 1.09000 * 109.46865 * 60.00261 * 1 2 3 29 29 H 1.09002 * 109.47365 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47382 * 239.99271 * 2 1 3 31 31 H 1.09005 * 109.47134 * 119.99371 * 2 1 3 32 32 H 1.08997 * 109.47295 * 183.84495 * 4 3 2 33 33 H 1.08997 * 109.47349 * 303.85172 * 4 3 2 34 34 H 0.97008 * 119.99670 * 179.97438 * 8 7 5 35 35 H 0.97010 * 119.99951 * 241.98405 * 16 13 3 36 36 H 1.09005 * 110.51106 * 335.83138 * 20 18 17 37 37 H 1.09004 * 110.51260 * 98.40440 * 20 18 17 38 38 H 1.09009 * 110.51053 * 118.64222 * 21 20 18 39 39 H 1.08997 * 110.51464 * 241.35237 * 21 20 18 40 40 H 1.08998 * 110.37188 * 142.80619 * 22 21 20 41 41 H 1.09005 * 110.36978 * 265.03279 * 22 21 20 42 42 H 1.09001 * 113.61643 * 25.43501 * 24 17 16 43 43 H 1.08998 * 113.61558 * 156.33555 * 24 17 16 44 44 H 1.08999 * 113.61916 * 220.01577 * 25 24 17 45 45 H 1.09000 * 113.68807 * 89.13094 * 25 24 17 46 46 H 1.08994 * 113.61465 * 270.88201 * 26 25 24 47 47 H 1.09002 * 113.69110 * 139.98404 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1779 2.1018 1.2655 5 6 3.2304 1.4209 2.1020 6 1 3.7109 0.5239 1.7401 7 6 3.5798 1.9429 3.3294 8 7 4.4979 1.3484 4.0596 9 14 2.7480 3.4939 3.9557 10 1 1.5380 3.1268 4.7342 11 1 3.6889 4.2428 4.8269 12 1 2.3560 4.3450 2.8036 13 16 2.3899 2.1280 -1.4306 14 8 1.6357 1.4658 -2.4366 15 8 2.3039 3.5255 -1.1880 16 7 3.9822 1.8064 -1.7523 17 6 4.4248 0.4241 -1.9509 18 6 4.6298 -0.3291 -0.6349 19 1 3.7019 -0.3523 -0.0634 20 6 5.7548 0.3309 0.1927 21 6 6.4859 -0.8610 0.8501 22 6 5.7165 -2.1001 0.3412 23 8 5.0987 -1.6707 -0.8913 24 6 5.6046 0.2894 -2.9280 25 6 4.5560 0.1712 -4.0503 26 6 3.5836 -0.3503 -2.9793 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8898 31 1 1.8933 -0.5138 0.8901 32 1 2.4828 3.1285 1.0631 33 1 1.2305 2.1037 1.8045 34 1 4.7440 1.7159 4.9229 35 1 4.6220 2.5334 -1.8091 36 1 6.4331 0.8837 -0.4572 37 1 5.3339 0.9895 0.9525 38 1 7.5258 -0.8975 0.5251 39 1 6.4265 -0.7935 1.9363 40 1 6.4052 -2.9240 0.1540 41 1 4.9568 -2.3983 1.0639 42 1 6.2199 1.1865 -2.9961 43 1 6.1915 -0.6174 -2.7815 44 1 4.8092 -0.5700 -4.8083 45 1 4.2619 1.1299 -4.4776 46 1 3.6189 -1.4316 -2.8468 47 1 2.5678 0.0300 -3.0875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365473563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:14 Heat of formation + Delta-G solvation = -110.129199 kcal Electronic energy + Delta-G solvation = -30574.688325 eV Core-core repulsion = 26691.640371 eV Total energy + Delta-G solvation = -3883.047954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.34135 -38.98444 -38.23115 -37.82824 -36.94486 -34.58678 -33.78992 -32.64804 -31.75249 -30.23246 -28.93470 -26.75942 -25.47135 -24.71238 -23.14878 -22.93802 -21.82743 -20.80106 -19.81708 -19.07108 -18.64533 -18.41964 -17.62323 -17.22012 -16.87956 -16.47446 -16.18918 -15.81023 -15.63001 -15.42807 -14.75870 -14.65550 -14.51009 -14.26086 -13.99191 -13.89764 -13.55903 -13.55158 -13.46781 -13.16290 -13.08312 -12.81957 -12.70970 -12.61965 -12.48404 -12.43596 -12.26785 -12.07272 -11.91464 -11.79658 -11.66094 -11.63903 -11.46520 -11.28157 -10.91846 -10.68512 -10.53518 -10.15789 -9.76380 -8.20123 -6.20377 -0.34560 1.35481 1.41727 1.49479 1.83912 2.38692 2.48817 3.00944 3.13673 3.32675 3.40171 3.72760 3.82062 3.89375 3.99113 4.07627 4.20013 4.21483 4.38046 4.40876 4.46390 4.58649 4.63695 4.70476 4.81863 4.93436 4.95253 4.96308 5.00105 5.03796 5.04063 5.07399 5.12955 5.15113 5.28427 5.32186 5.38176 5.40268 5.43955 5.46508 5.53262 5.60370 5.80922 5.99332 6.16785 6.40924 6.86241 7.41758 8.92082 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011295 B = 0.007207 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.296298 B = 3884.383593 C = 5117.597769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.120 3.880 3 N -0.987 5.987 4 C 0.220 3.780 5 C -0.525 4.525 6 H 0.086 0.914 7 C 0.035 3.965 8 N -0.924 5.924 9 Si 0.904 3.096 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.259 1.259 13 S 2.795 3.205 14 O -0.985 6.985 15 O -1.016 7.016 16 N -1.091 6.091 17 C 0.151 3.849 18 C 0.065 3.935 19 H 0.077 0.923 20 C -0.151 4.151 21 C -0.147 4.147 22 C 0.049 3.951 23 O -0.372 6.372 24 C -0.115 4.115 25 C -0.127 4.127 26 C -0.179 4.179 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.036 0.964 33 H 0.029 0.971 34 H 0.263 0.737 35 H 0.423 0.577 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.113 0.887 41 H 0.048 0.952 42 H 0.079 0.921 43 H 0.103 0.897 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.751 -5.522 -11.766 13.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.005 4.005 3 N -0.827 5.827 4 C 0.095 3.905 5 C -0.564 4.564 6 H 0.104 0.896 7 C -0.165 4.165 8 N -0.564 5.564 9 Si 0.730 3.270 10 H -0.195 1.195 11 H -0.214 1.214 12 H -0.183 1.183 13 S 2.804 3.196 14 O -0.969 6.969 15 O -1.001 7.001 16 N -0.852 5.852 17 C 0.061 3.939 18 C 0.006 3.994 19 H 0.095 0.905 20 C -0.188 4.188 21 C -0.185 4.185 22 C -0.027 4.027 23 O -0.290 6.290 24 C -0.154 4.154 25 C -0.164 4.164 26 C -0.217 4.217 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.259 0.741 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.131 0.869 41 H 0.066 0.934 42 H 0.098 0.902 43 H 0.121 0.879 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.119 0.881 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.082 -5.243 -12.322 13.435 hybrid contribution 0.354 1.197 1.673 2.087 sum 1.436 -4.046 -10.649 11.482 Atomic orbital electron populations 1.22178 0.95307 1.03265 1.01821 1.21288 0.94994 0.81364 1.02861 1.57446 1.79349 1.24045 1.21890 1.19338 0.96969 0.92129 0.82066 1.21690 1.20400 1.12535 1.01735 0.89649 1.25358 0.95330 0.98800 0.97057 1.69962 1.32428 1.41274 1.12759 0.86365 0.79227 0.82077 0.79281 1.19483 1.21355 1.18311 1.01422 0.73403 0.71887 0.72864 1.93456 1.70595 1.75661 1.57164 1.93537 1.86821 1.33433 1.86278 1.55336 1.28861 1.13146 1.87848 1.21035 1.00099 0.80284 0.92453 1.23387 0.98286 0.82642 0.95105 0.90535 1.22940 0.97332 0.98822 0.99724 1.22804 1.00315 0.94819 1.00556 1.23420 0.96015 0.97338 0.85945 1.88950 1.77137 1.28976 1.33954 1.23134 0.95170 1.03438 0.93627 1.22744 0.95687 1.01656 0.96316 1.23963 1.01322 1.01183 0.95226 0.92755 0.92797 0.89546 0.90146 0.90443 0.94622 0.95320 0.92806 0.74112 0.90928 0.90389 0.89856 0.92423 0.86868 0.93389 0.90195 0.87900 0.89658 0.90375 0.88142 0.87894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.84 10.24 71.98 0.74 -4.10 16 2 C 0.12 3.97 3.87 86.38 0.33 4.30 16 3 N -0.99 -37.10 2.37 -519.86 -1.23 -38.33 16 4 C 0.22 9.65 4.69 85.63 0.40 10.05 16 5 C -0.52 -25.49 8.03 25.60 0.21 -25.28 16 6 H 0.09 4.26 4.55 -2.91 -0.01 4.24 16 7 C 0.03 1.79 5.47 84.66 0.46 2.25 16 8 N -0.92 -50.87 13.96 21.45 0.30 -50.57 16 9 Si 0.90 41.20 27.50 68.60 1.89 43.09 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 12 H -0.26 -11.63 6.49 99.48 0.65 -10.98 16 13 S 2.80 100.96 6.03 -56.49 -0.34 100.62 16 14 O -0.99 -35.46 13.63 -128.00 -1.75 -37.21 16 15 O -1.02 -43.20 16.65 -128.00 -2.13 -45.33 16 16 N -1.09 -32.93 5.44 -150.13 -0.82 -33.75 16 17 C 0.15 4.23 0.76 4.13 0.00 4.24 16 18 C 0.07 2.05 2.83 31.10 0.09 2.14 16 19 H 0.08 2.71 2.79 -2.39 -0.01 2.70 16 20 C -0.15 -5.07 6.00 31.61 0.19 -4.88 16 21 C -0.15 -4.51 7.09 31.61 0.22 -4.29 16 22 C 0.05 1.37 7.63 72.49 0.55 1.92 16 23 O -0.37 -10.89 9.51 -148.98 -1.42 -12.31 16 24 C -0.11 -2.60 6.63 31.21 0.21 -2.40 16 25 C -0.13 -2.80 8.00 31.21 0.25 -2.55 16 26 C -0.18 -4.78 6.13 31.12 0.19 -4.59 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.05 1.58 8.06 -2.39 -0.02 1.56 16 29 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.08 2.45 6.11 -2.39 -0.01 2.43 16 31 H 0.08 2.73 6.91 -2.38 -0.02 2.72 16 32 H 0.04 1.67 5.78 -2.39 -0.01 1.65 16 33 H 0.03 1.25 7.66 -2.39 -0.02 1.23 16 34 H 0.26 13.94 8.31 -92.70 -0.77 13.17 16 35 H 0.42 11.27 8.92 -96.73 -0.86 10.41 16 36 H 0.07 2.19 7.36 -2.38 -0.02 2.17 16 37 H 0.08 3.29 5.62 -2.39 -0.01 3.28 16 38 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 43 H 0.10 2.30 7.34 -2.39 -0.02 2.28 16 44 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 46 H 0.10 2.59 7.45 -2.39 -0.02 2.57 16 47 H 0.10 3.12 4.56 -2.39 -0.01 3.11 16 Total: -1.00 -60.06 357.84 -1.58 -61.64 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: 0.07 Total: 35.34 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 3.85 Total: -23.19 kcal Atomic # 7 Polarization: -120.90 SS G_CDS: -1.75 Total: -122.64 kcal Atomic # 8 Polarization: -89.55 SS G_CDS: -5.29 Total: -94.85 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.89 Total: 43.09 kcal Atomic # 16 Polarization: 100.96 SS G_CDS: -0.34 Total: 100.62 kcal Total: -60.06 -1.58 -61.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365473563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.489 kcal (2) G-P(sol) polarization free energy of solvation -60.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds