Wall clock time and date at job start Tue Mar 31 2020 16:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46913 * 2 1 4 4 C 1.52997 * 109.47499 * 240.00328 * 2 1 3 5 5 S 1.81394 * 109.47303 * 64.99583 * 4 2 1 6 6 C 1.81397 * 101.92381 * 180.02562 * 5 4 2 7 7 O 1.42098 * 108.57997 * 294.49129 * 5 4 2 8 8 O 1.42102 * 108.58133 * 65.51848 * 5 4 2 9 9 C 1.50700 * 109.47103 * 119.99859 * 2 1 3 10 10 O 1.21281 * 119.99737 * 87.34601 * 9 2 1 11 11 N 1.34772 * 119.99973 * 267.34115 * 9 2 1 12 12 C 1.47022 * 125.65030 * 354.82693 * 11 9 2 13 13 C 1.54322 * 107.27247 * 181.09963 * 12 11 9 14 14 C 1.55160 * 102.94182 * 22.18992 * 13 12 11 15 15 H 1.09006 * 111.00273 * 82.61258 * 14 13 12 16 16 C 1.52995 * 111.00574 * 206.41933 * 14 13 12 17 17 C 1.52996 * 109.47529 * 293.55030 * 16 14 13 18 18 N 1.46507 * 109.47297 * 180.02562 * 17 16 14 19 19 C 1.36936 * 119.99991 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00273 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00018 * 179.97438 * 19 18 17 22 22 N 1.31616 * 119.99937 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99657 * 0.27698 * 21 19 18 24 24 H 1.48506 * 109.47065 * 269.72214 * 23 21 19 25 25 H 1.48491 * 109.47255 * 29.72236 * 23 21 19 26 26 H 1.48502 * 109.47070 * 149.72384 * 23 21 19 27 27 C 1.47426 * 125.65015 * 174.87125 * 11 9 2 28 28 H 1.08996 * 109.47393 * 293.06515 * 1 2 3 29 29 H 1.09004 * 109.46958 * 53.06486 * 1 2 3 30 30 H 1.09001 * 109.46884 * 173.06172 * 1 2 3 31 31 H 1.08994 * 109.47250 * 185.00060 * 4 2 1 32 32 H 1.09009 * 109.46823 * 304.99961 * 4 2 1 33 33 H 1.09001 * 109.47384 * 60.00039 * 6 5 4 34 34 H 1.08999 * 109.47678 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.46953 * 299.99955 * 6 5 4 36 36 H 1.08998 * 109.88611 * 61.68207 * 12 11 9 37 37 H 1.09003 * 109.88109 * 300.51548 * 12 11 9 38 38 H 1.08999 * 110.72484 * 263.83034 * 13 12 11 39 39 H 1.09001 * 110.72301 * 140.55298 * 13 12 11 40 40 H 1.09002 * 109.47488 * 173.54857 * 16 14 13 41 41 H 1.09002 * 109.47273 * 53.54949 * 16 14 13 42 42 H 1.09003 * 109.47356 * 59.99673 * 17 16 14 43 43 H 1.08998 * 109.47113 * 299.99552 * 17 16 14 44 44 H 0.97001 * 119.99863 * 359.97438 * 18 17 16 45 45 H 0.97007 * 119.99761 * 180.02562 * 22 21 19 46 46 H 1.09006 * 110.36090 * 36.99173 * 27 11 9 47 47 H 1.09001 * 110.36926 * 274.67587 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 16 1.5602 0.2156 -2.7266 6 6 2.2540 -0.8026 -4.0578 7 8 0.1434 0.1967 -2.8342 8 8 2.2382 1.4644 -2.7109 9 6 2.0323 -0.7104 1.2305 10 8 2.1886 -1.9130 1.2150 11 7 2.3080 -0.0093 2.3480 12 6 2.2672 1.4551 2.4728 13 6 2.6819 1.8035 3.9178 14 6 3.4792 0.5490 4.3626 15 1 4.5104 0.5970 4.0124 16 6 3.4268 0.3760 5.8819 17 6 4.1757 1.5292 6.5527 18 7 4.1260 1.3632 8.0075 19 6 4.7323 2.2815 8.8225 20 1 5.2476 3.1279 8.3929 21 6 4.6847 2.1245 10.2009 22 7 5.2679 3.0068 10.9843 23 14 3.8002 0.6564 10.9437 24 1 2.3784 1.0077 11.1897 25 1 3.8710 -0.4914 10.0042 26 1 4.4479 0.2859 12.2276 27 6 2.7012 -0.5836 3.6476 28 1 -0.3634 0.4026 0.9455 29 1 -0.3633 0.6176 -0.8215 30 1 -0.3633 -1.0202 -0.1241 31 1 3.1263 -0.7993 -1.2055 32 1 1.6054 -1.7198 -1.2952 33 1 1.8128 -1.7987 -4.0210 34 1 2.0317 -0.3427 -5.0207 35 1 3.3340 -0.8787 -3.9318 36 1 1.2569 1.8156 2.2799 37 1 2.9652 1.9067 1.7677 38 1 1.8036 1.9455 4.5475 39 1 3.3166 2.6895 3.9339 40 1 3.8945 -0.5695 6.1564 41 1 2.3879 0.3767 6.2120 42 1 3.7080 2.4747 6.2783 43 1 5.2146 1.5285 6.2227 44 1 3.6629 0.6032 8.3933 45 1 5.2350 2.8969 11.9475 46 1 3.3446 -1.4511 3.4998 47 1 1.8178 -0.8593 4.2235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570022457.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:41 Heat of formation + Delta-G solvation = -96.774790 kcal Electronic energy + Delta-G solvation = -26464.509578 eV Core-core repulsion = 22582.040715 eV Total energy + Delta-G solvation = -3882.468863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.57645 -38.24581 -37.50719 -36.59756 -35.38590 -35.09923 -33.02597 -31.17474 -30.32499 -29.78161 -28.24406 -27.76930 -24.89060 -23.23521 -22.76188 -21.32270 -20.31313 -19.41962 -19.27736 -18.12550 -17.58450 -16.86474 -16.69289 -16.59506 -16.12818 -15.53397 -15.15335 -14.72396 -14.64390 -14.26020 -13.99895 -13.85824 -13.78249 -13.54989 -13.45447 -13.17965 -12.99792 -12.95551 -12.74511 -12.49691 -12.35908 -12.21833 -12.03074 -11.87632 -11.80698 -11.61589 -11.57518 -11.31451 -11.17724 -10.90151 -10.73449 -10.56041 -10.44123 -10.13184 -10.00559 -9.60323 -8.92689 -8.89948 -7.24371 -5.77947 -3.13560 -0.59927 2.15808 2.24638 2.60409 3.09429 3.36567 3.39284 3.44515 3.45256 3.81489 4.04308 4.08938 4.21986 4.37119 4.39382 4.48988 4.58138 4.65212 4.68883 4.81737 4.98076 5.02919 5.07476 5.16511 5.26272 5.26810 5.36960 5.42449 5.47981 5.55471 5.65825 5.70935 5.73788 5.78443 5.91589 5.97559 6.05225 6.10223 6.25465 6.70057 6.74351 7.19632 7.80864 7.98320 8.41123 9.20353 9.92821 10.12456 11.40421 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.034221 B = 0.001884 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.003462 B =14860.219945 C =15151.495574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 H 0.105 0.895 4 C -0.598 4.598 5 S 2.420 3.580 6 C -0.655 4.655 7 O -0.933 6.933 8 O -0.936 6.936 9 C 0.541 3.459 10 O -0.539 6.539 11 N -0.616 5.616 12 C 0.092 3.908 13 C -0.127 4.127 14 C -0.094 4.094 15 H 0.087 0.913 16 C -0.120 4.120 17 C 0.159 3.841 18 N -0.758 5.758 19 C -0.245 4.245 20 H 0.090 0.910 21 C 0.003 3.997 22 N -0.934 5.934 23 Si 0.886 3.114 24 H -0.284 1.284 25 H -0.277 1.277 26 H -0.291 1.291 27 C 0.108 3.892 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.136 0.864 32 H 0.145 0.855 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.029 0.971 43 H 0.025 0.975 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.079 0.921 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.840 -8.042 -31.765 33.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.116 4.116 3 H 0.124 0.876 4 C -0.727 4.727 5 S 2.602 3.398 6 C -0.805 4.805 7 O -0.930 6.930 8 O -0.934 6.934 9 C 0.328 3.672 10 O -0.416 6.416 11 N -0.349 5.349 12 C -0.030 4.030 13 C -0.165 4.165 14 C -0.114 4.114 15 H 0.105 0.895 16 C -0.158 4.158 17 C 0.031 3.969 18 N -0.404 5.404 19 C -0.375 4.375 20 H 0.108 0.892 21 C -0.193 4.193 22 N -0.582 5.582 23 Si 0.716 3.284 24 H -0.211 1.211 25 H -0.203 1.203 26 H -0.217 1.217 27 C -0.014 4.014 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.154 0.846 32 H 0.163 0.837 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.047 0.953 43 H 0.043 0.957 44 H 0.193 0.807 45 H 0.069 0.931 46 H 0.097 0.903 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.112 -7.737 -31.847 34.017 hybrid contribution 0.003 -1.767 0.748 1.918 sum -9.109 -9.504 -31.100 33.771 Atomic orbital electron populations 1.22163 0.90891 1.04876 1.04679 1.20947 0.98861 1.00403 0.91395 0.87646 1.30303 1.12380 1.14954 1.15023 1.07885 0.76240 0.77214 0.78473 1.30251 1.14032 1.16764 1.19471 1.93606 1.27196 1.86810 1.85378 1.93623 1.76275 1.37593 1.85861 1.19851 0.77261 0.87052 0.83041 1.90698 1.53070 1.14310 1.83477 1.48524 1.67734 1.07918 1.10756 1.22237 1.01739 0.79966 0.99086 1.22757 1.01184 0.98873 0.93705 1.22324 0.99494 0.93695 0.95887 0.89450 1.21717 1.01556 1.00402 0.92127 1.20605 0.97035 0.95003 0.84221 1.42729 1.66985 1.29455 1.01193 1.19063 1.27220 1.03221 0.87962 0.89235 1.24692 1.00515 0.98173 0.95911 1.69705 1.48578 1.36462 1.03471 0.86526 0.79727 0.83400 0.78741 1.21081 1.20346 1.21722 1.22385 0.99213 0.97204 0.82596 0.90840 0.89149 0.90638 0.84568 0.83690 0.85096 0.85050 0.85185 0.91022 0.90931 0.89903 0.89214 0.91554 0.91598 0.95343 0.95683 0.80708 0.93061 0.90262 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 8.57 37.16 0.32 -0.93 16 2 C -0.09 -0.73 2.40 -91.77 -0.22 -0.95 16 3 H 0.11 0.68 7.00 -51.93 -0.36 0.31 16 4 C -0.60 -3.22 4.80 37.16 0.18 -3.04 16 5 S 2.42 12.59 5.15 -107.50 -0.55 12.04 16 6 C -0.66 -1.31 10.62 101.05 1.07 -0.24 16 7 O -0.93 -7.62 15.60 -57.83 -0.90 -8.52 16 8 O -0.94 -8.28 18.10 -57.83 -1.05 -9.33 16 9 C 0.54 5.91 6.86 -10.99 -0.08 5.83 16 10 O -0.54 -7.60 16.56 5.56 0.09 -7.51 16 11 N -0.62 -6.33 3.33 -170.52 -0.57 -6.90 16 12 C 0.09 0.75 6.02 -3.06 -0.02 0.73 16 13 C -0.13 -1.19 5.59 -24.90 -0.14 -1.33 16 14 C -0.09 -1.02 3.07 -88.48 -0.27 -1.30 16 15 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 16 C -0.12 -1.64 4.84 -26.74 -0.13 -1.77 16 17 C 0.16 2.88 6.11 -4.04 -0.02 2.85 16 18 N -0.76 -17.81 5.41 -59.91 -0.32 -18.13 16 19 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 20 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 21 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 22 N -0.93 -29.35 13.97 55.49 0.78 -28.57 16 23 Si 0.89 22.06 27.74 -169.99 -4.71 17.35 16 24 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 C 0.11 1.18 6.40 -2.53 -0.02 1.16 16 28 H 0.07 0.51 8.13 -51.93 -0.42 0.08 16 29 H 0.09 0.65 5.88 -51.93 -0.31 0.35 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.14 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.14 0.64 8.02 -51.92 -0.42 0.22 16 33 H 0.13 0.06 8.14 -51.92 -0.42 -0.37 16 34 H 0.13 0.20 8.14 -51.92 -0.42 -0.22 16 35 H 0.13 0.07 8.14 -51.92 -0.42 -0.35 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.51 7.91 -51.93 -0.41 0.10 16 38 H 0.08 0.79 8.01 -51.93 -0.42 0.38 16 39 H 0.09 0.80 8.13 -51.93 -0.42 0.38 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 42 H 0.03 0.51 7.51 -51.93 -0.39 0.12 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.36 8.25 5.53 -40.82 -0.23 8.02 16 45 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 46 H 0.08 0.93 7.99 -51.93 -0.41 0.52 16 47 H 0.07 0.78 8.04 -51.93 -0.42 0.36 16 LS Contribution 387.75 15.07 5.84 5.84 Total: -1.00 -39.03 387.75 -9.00 -48.02 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -8.02 Total: 1.78 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 0.42 Total: -6.07 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.12 Total: -53.60 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -1.86 Total: -25.36 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.35 kcal Atomic # 16 Polarization: 12.59 SS G_CDS: -0.55 Total: 12.04 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.03 -9.00 -48.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570022457.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.750 kcal (2) G-P(sol) polarization free energy of solvation -39.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds