Wall clock time and date at job start Tue Mar 31 2020 18:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42899 * 109.47113 * 2 1 4 4 C 1.42903 * 113.99629 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46726 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.47357 * 64.99864 * 5 4 3 7 7 C 1.46899 * 110.99842 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47187 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.51156 * 59.99439 * 8 7 6 10 10 C 1.53293 * 109.51396 * 180.10123 * 8 7 6 11 11 N 1.47172 * 108.37214 * 172.17303 * 10 8 7 12 12 C 1.34777 * 120.94219 * 129.53046 * 11 10 8 13 13 O 1.21285 * 119.99600 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00227 * 180.02562 * 12 11 10 15 15 S 1.81006 * 109.47034 * 179.97438 * 14 12 11 16 16 C 1.76207 * 99.99659 * 180.02562 * 15 14 12 17 17 H 1.07995 * 119.99961 * 359.97438 * 16 15 14 18 18 C 1.38796 * 119.99741 * 180.02562 * 16 15 14 19 19 N 1.31626 * 120.00034 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00223 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47080 * 90.00163 * 20 18 16 22 22 H 1.48494 * 109.47209 * 210.00585 * 20 18 16 23 23 H 1.48505 * 109.46850 * 330.00571 * 20 18 16 24 24 C 1.47146 * 118.07574 * 309.54104 * 11 10 8 25 25 C 1.53298 * 108.38196 * 50.51041 * 24 11 10 26 26 O 1.42962 * 109.21866 * 307.69027 * 25 24 11 27 27 H 1.08997 * 109.46502 * 300.00085 * 1 2 3 28 28 H 1.08998 * 109.46733 * 60.00191 * 1 2 3 29 29 H 1.08997 * 109.46916 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46516 * 239.99933 * 2 1 3 31 31 H 1.09004 * 109.47113 * 120.00401 * 2 1 3 32 32 H 1.09002 * 109.47382 * 59.99956 * 4 3 2 33 33 H 1.09001 * 109.46938 * 299.99942 * 4 3 2 34 34 H 1.09002 * 109.46642 * 184.99995 * 5 4 3 35 35 H 1.09002 * 109.47069 * 304.99524 * 5 4 3 36 36 H 1.00896 * 111.00049 * 56.04523 * 6 5 4 37 37 H 1.09004 * 109.47030 * 300.00027 * 7 6 5 38 38 H 1.09003 * 109.47440 * 59.99737 * 7 6 5 39 39 H 1.08999 * 109.67989 * 291.94401 * 10 8 7 40 40 H 1.08999 * 109.67959 * 52.50097 * 10 8 7 41 41 H 1.09002 * 109.47208 * 299.99477 * 14 12 11 42 42 H 1.09004 * 109.47065 * 59.99821 * 14 12 11 43 43 H 0.97001 * 120.00541 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.68649 * 290.78078 * 24 11 10 45 45 H 1.09007 * 109.67866 * 170.22727 * 24 11 10 46 46 H 1.09006 * 109.50856 * 187.77140 * 25 24 11 47 47 H 1.08998 * 109.51615 * 67.61779 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 7 3.3868 3.5616 1.2559 7 6 3.7500 4.9845 1.2922 8 6 3.2784 5.5977 2.6123 9 1 3.7546 5.0800 3.4449 10 6 3.6547 7.0833 2.6501 11 7 3.0289 7.6902 3.8359 12 6 3.7524 8.4308 4.6987 13 8 4.9366 8.6054 4.5031 14 6 3.0901 9.0420 5.9065 15 16 4.3160 9.9693 6.8623 16 6 3.2988 10.5576 8.1754 17 1 2.2487 10.3067 8.1989 18 6 3.8471 11.3443 9.1789 19 7 3.0873 11.7842 10.1595 20 14 5.6635 11.7788 9.1377 21 1 5.8527 13.0445 8.3845 22 1 6.1632 11.9493 10.5256 23 1 6.4184 10.6880 8.4702 24 6 1.5910 7.4648 4.0519 25 6 1.3163 5.9603 3.9463 26 8 1.8586 5.4680 2.7186 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 3.8334 0.9766 -0.8908 33 1 3.8341 0.9763 0.8892 34 1 4.9083 3.0253 -0.0899 35 1 3.3493 3.4418 -0.8412 36 1 3.7637 3.0720 2.0535 37 1 4.8324 5.0854 1.2114 38 1 3.2737 5.5026 0.4598 39 1 4.7380 7.1860 2.7126 40 1 3.2898 7.5774 1.7497 41 1 2.2958 9.7151 5.5837 42 1 2.6672 8.2523 6.5276 43 1 3.4705 12.3337 10.8610 44 1 1.0177 7.9969 3.2928 45 1 1.3084 7.8208 5.0427 46 1 0.2407 5.7844 3.9657 47 1 1.7854 5.4448 4.7843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570131526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:00 Heat of formation + Delta-G solvation = -120.803012 kcal Electronic energy + Delta-G solvation = -26019.284578 eV Core-core repulsion = 22135.773774 eV Total energy + Delta-G solvation = -3883.510805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.28946 -38.61226 -38.21865 -36.26796 -34.62654 -32.80805 -32.46127 -31.48507 -29.75759 -29.12323 -27.44164 -25.66077 -24.82234 -23.25288 -23.09418 -22.34650 -21.40133 -19.34036 -17.77232 -17.40406 -16.99049 -16.79703 -16.55551 -15.93335 -15.82006 -15.46388 -15.13346 -14.96749 -14.82192 -14.55992 -14.49231 -13.89834 -13.66552 -13.62461 -13.31511 -13.13166 -12.83734 -12.76572 -12.48512 -12.28842 -12.10687 -11.93508 -11.76084 -11.57945 -11.41938 -11.28105 -11.23752 -11.02997 -10.74921 -10.61126 -10.17227 -9.90597 -9.87968 -9.53608 -9.02577 -8.67669 -8.55249 -8.52531 -6.95170 -6.30967 -4.03245 2.60596 2.85420 3.09882 3.31399 3.34720 3.48343 3.52547 3.55237 3.75513 4.30763 4.51530 4.60151 4.62337 4.67589 4.71068 4.81131 4.81686 4.84656 4.92411 5.00278 5.02130 5.03824 5.05570 5.08118 5.13185 5.20256 5.24035 5.39015 5.41005 5.48883 5.52187 5.58812 5.61288 5.65767 5.70754 5.80863 5.81507 5.94225 6.37836 6.61401 6.89812 7.01658 7.11677 7.36085 7.91932 8.34800 8.39314 9.15080 10.78166 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027468 B = 0.001931 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.116093 B =14499.195480 C =15007.867048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.370 6.370 4 C 0.066 3.934 5 C 0.060 3.940 6 N -0.670 5.670 7 C 0.069 3.931 8 C 0.082 3.918 9 H 0.061 0.939 10 C 0.086 3.914 11 N -0.621 5.621 12 C 0.535 3.465 13 O -0.518 6.518 14 C -0.122 4.122 15 S -0.142 6.142 16 C -0.522 4.522 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.879 5.879 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.236 1.236 24 C 0.071 3.929 25 C 0.047 3.953 26 O -0.356 6.356 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.082 0.918 36 H 0.339 0.661 37 H 0.047 0.953 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.077 0.923 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.956 -22.212 -21.457 31.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.289 6.289 4 C -0.011 4.011 5 C -0.069 4.069 6 N -0.302 5.302 7 C -0.060 4.060 8 C 0.023 3.977 9 H 0.079 0.921 10 C -0.038 4.038 11 N -0.358 5.358 12 C 0.323 3.677 13 O -0.393 6.393 14 C -0.272 4.272 15 S 0.084 5.916 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.516 5.516 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.160 1.160 24 C -0.052 4.052 25 C -0.031 4.031 26 O -0.274 6.274 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.101 0.899 36 H 0.157 0.843 37 H 0.065 0.935 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.117 0.883 46 H 0.125 0.875 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.089 -21.636 -21.941 30.885 hybrid contribution 0.473 -0.011 0.878 0.997 sum -1.615 -21.647 -21.063 30.247 Atomic orbital electron populations 1.21720 0.93707 1.01984 1.03367 1.22443 0.95805 0.84266 0.99573 1.88049 1.20187 1.25467 1.95223 1.22475 0.82421 0.96399 0.99824 1.21988 0.97336 0.93580 0.94005 1.60260 1.64316 1.01826 1.03748 1.21913 0.97786 0.89269 0.97077 1.22435 0.83165 0.94294 0.97793 0.92129 1.22165 1.00609 0.92713 0.88276 1.48094 1.09597 1.52737 1.25379 1.20337 0.86742 0.77424 0.83153 1.90687 1.15232 1.58897 1.74452 1.23305 1.03774 1.03095 0.97022 1.84799 1.14722 1.64736 1.27320 1.22301 0.98083 1.37549 1.08989 0.89353 1.24706 0.98500 0.94085 0.93970 1.69933 1.36079 1.33948 1.11614 0.86737 0.85264 0.81301 0.78561 1.19195 1.19906 1.15969 1.22490 0.81310 0.97596 1.03822 1.22979 1.00054 0.92461 0.87563 1.88090 1.19740 1.82334 1.37241 0.91585 0.91929 0.91369 0.93908 0.93678 0.93072 0.93538 0.93833 0.89941 0.84332 0.93511 0.89778 0.88193 0.90800 0.88422 0.88466 0.91915 0.90433 0.88289 0.87524 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 2 C 0.06 0.39 6.66 37.16 0.25 0.64 16 3 O -0.37 -3.52 10.29 -35.23 -0.36 -3.88 16 4 C 0.07 0.46 6.22 37.16 0.23 0.69 16 5 C 0.06 0.43 6.07 -3.82 -0.02 0.41 16 6 N -0.67 -5.91 6.32 -113.78 -0.72 -6.63 16 7 C 0.07 0.60 5.38 -3.82 -0.02 0.58 16 8 C 0.08 0.86 2.98 -26.58 -0.08 0.79 16 9 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 10 C 0.09 1.03 5.93 -3.52 -0.02 1.01 16 11 N -0.62 -8.69 3.02 -172.26 -0.52 -9.21 16 12 C 0.54 9.76 7.73 -10.99 -0.08 9.67 16 13 O -0.52 -11.22 15.33 5.55 0.09 -11.13 16 14 C -0.12 -2.36 4.53 36.00 0.16 -2.20 16 15 S -0.14 -3.60 18.55 -107.50 -1.99 -5.60 16 16 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 17 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 18 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 19 N -0.88 -26.39 13.97 55.49 0.78 -25.61 16 20 Si 0.86 21.72 27.74 -169.99 -4.72 17.00 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 24 C 0.07 0.79 6.54 -3.54 -0.02 0.76 16 25 C 0.05 0.47 6.98 37.31 0.26 0.73 16 26 O -0.36 -4.13 10.25 -35.23 -0.36 -4.50 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.34 2.76 8.73 -39.29 -0.34 2.42 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.10 1.30 7.08 -51.93 -0.37 0.93 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 1.77 8.02 -51.92 -0.42 1.36 16 42 H 0.10 1.75 7.66 -51.91 -0.40 1.35 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.10 1.06 6.05 -51.93 -0.31 0.74 16 46 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 395.41 15.07 5.96 5.96 Total: -1.00 -34.99 395.41 -8.79 -43.78 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -8.18 Total: -0.74 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 1.25 Total: 0.56 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: -0.46 Total: -41.46 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.64 Total: -19.51 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.72 Total: 17.00 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.99 -8.79 -43.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570131526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.027 kcal (2) G-P(sol) polarization free energy of solvation -34.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds