Wall clock time and date at job start Tue Mar 31 2020 18:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42899 * 109.47113 * 2 1 4 4 C 1.42903 * 113.99629 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46726 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.47357 * 64.99864 * 5 4 3 7 7 C 1.46899 * 110.99842 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47187 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.51156 * 59.99439 * 8 7 6 10 10 C 1.53293 * 109.51396 * 180.10123 * 8 7 6 11 11 N 1.47172 * 108.37214 * 172.17303 * 10 8 7 12 12 C 1.34777 * 120.94219 * 129.53046 * 11 10 8 13 13 O 1.21285 * 119.99600 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00227 * 180.02562 * 12 11 10 15 15 S 1.81006 * 109.47034 * 179.97438 * 14 12 11 16 16 C 1.76207 * 99.99659 * 180.02562 * 15 14 12 17 17 H 1.07995 * 119.99961 * 359.97438 * 16 15 14 18 18 C 1.38796 * 119.99741 * 180.02562 * 16 15 14 19 19 N 1.31626 * 120.00034 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00223 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47080 * 90.00163 * 20 18 16 22 22 H 1.48494 * 109.47209 * 210.00585 * 20 18 16 23 23 H 1.48505 * 109.46850 * 330.00571 * 20 18 16 24 24 C 1.47146 * 118.07574 * 309.54104 * 11 10 8 25 25 C 1.53298 * 108.38196 * 50.51041 * 24 11 10 26 26 O 1.42962 * 109.21866 * 307.69027 * 25 24 11 27 27 H 1.08997 * 109.46502 * 300.00085 * 1 2 3 28 28 H 1.08998 * 109.46733 * 60.00191 * 1 2 3 29 29 H 1.08997 * 109.46916 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46516 * 239.99933 * 2 1 3 31 31 H 1.09004 * 109.47113 * 120.00401 * 2 1 3 32 32 H 1.09002 * 109.47382 * 59.99956 * 4 3 2 33 33 H 1.09001 * 109.46938 * 299.99942 * 4 3 2 34 34 H 1.09002 * 109.46642 * 184.99995 * 5 4 3 35 35 H 1.09002 * 109.47069 * 304.99524 * 5 4 3 36 36 H 1.00896 * 111.00049 * 56.04523 * 6 5 4 37 37 H 1.09004 * 109.47030 * 300.00027 * 7 6 5 38 38 H 1.09003 * 109.47440 * 59.99737 * 7 6 5 39 39 H 1.08999 * 109.67989 * 291.94401 * 10 8 7 40 40 H 1.08999 * 109.67959 * 52.50097 * 10 8 7 41 41 H 1.09002 * 109.47208 * 299.99477 * 14 12 11 42 42 H 1.09004 * 109.47065 * 59.99821 * 14 12 11 43 43 H 0.97001 * 120.00541 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.68649 * 290.78078 * 24 11 10 45 45 H 1.09007 * 109.67866 * 170.22727 * 24 11 10 46 46 H 1.09006 * 109.50856 * 187.77140 * 25 24 11 47 47 H 1.08998 * 109.51615 * 67.61779 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 7 3.3868 3.5616 1.2559 7 6 3.7500 4.9845 1.2922 8 6 3.2784 5.5977 2.6123 9 1 3.7546 5.0800 3.4449 10 6 3.6547 7.0833 2.6501 11 7 3.0289 7.6902 3.8359 12 6 3.7524 8.4308 4.6987 13 8 4.9366 8.6054 4.5031 14 6 3.0901 9.0420 5.9065 15 16 4.3160 9.9693 6.8623 16 6 3.2988 10.5576 8.1754 17 1 2.2487 10.3067 8.1989 18 6 3.8471 11.3443 9.1789 19 7 3.0873 11.7842 10.1595 20 14 5.6635 11.7788 9.1377 21 1 5.8527 13.0445 8.3845 22 1 6.1632 11.9493 10.5256 23 1 6.4184 10.6880 8.4702 24 6 1.5910 7.4648 4.0519 25 6 1.3163 5.9603 3.9463 26 8 1.8586 5.4680 2.7186 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 3.8334 0.9766 -0.8908 33 1 3.8341 0.9763 0.8892 34 1 4.9083 3.0253 -0.0899 35 1 3.3493 3.4418 -0.8412 36 1 3.7637 3.0720 2.0535 37 1 4.8324 5.0854 1.2114 38 1 3.2737 5.5026 0.4598 39 1 4.7380 7.1860 2.7126 40 1 3.2898 7.5774 1.7497 41 1 2.2958 9.7151 5.5837 42 1 2.6672 8.2523 6.5276 43 1 3.4705 12.3337 10.8610 44 1 1.0177 7.9969 3.2928 45 1 1.3084 7.8208 5.0427 46 1 0.2407 5.7844 3.9657 47 1 1.7854 5.4448 4.7843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570131526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:59 Heat of formation + Delta-G solvation = -147.014382 kcal Electronic energy + Delta-G solvation = -26020.421189 eV Core-core repulsion = 22135.773774 eV Total energy + Delta-G solvation = -3884.647415 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.42497 -39.55848 -39.01575 -36.97060 -35.76707 -34.68243 -33.56861 -32.14672 -31.09848 -29.88469 -28.40037 -27.84081 -25.72769 -24.16763 -23.60264 -22.91839 -22.30313 -20.68222 -19.61932 -18.39818 -17.99181 -17.65498 -17.22172 -17.12849 -16.92821 -16.87331 -16.38514 -16.09706 -15.75400 -15.58003 -15.21574 -15.15454 -14.94543 -14.76577 -14.68434 -14.07245 -13.81653 -13.65515 -13.44977 -13.34589 -13.23662 -13.03418 -12.88879 -12.74386 -12.65228 -12.35190 -12.21865 -12.09490 -11.88712 -11.82194 -11.62278 -11.18507 -11.16192 -10.94678 -10.54884 -10.45190 -9.66619 -9.28167 -9.02421 -8.52407 -6.24004 0.93366 1.30531 1.41893 1.43567 1.50941 1.92022 2.23796 2.64227 2.73906 2.85461 2.85792 3.08753 3.45394 3.77379 3.90779 3.97484 4.03614 4.10621 4.11319 4.19353 4.23139 4.27853 4.33427 4.36960 4.40388 4.46442 4.53239 4.55417 4.58896 4.64712 4.65650 4.79551 4.84929 4.92779 4.96286 4.98467 5.08300 5.30156 5.31046 5.69805 5.99046 6.10176 6.11356 6.20634 6.37880 6.50553 6.92520 6.96574 8.59797 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027468 B = 0.001931 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.116093 B =14499.195480 C =15007.867048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.400 6.400 4 C 0.063 3.937 5 C 0.061 3.939 6 N -0.685 5.685 7 C 0.075 3.925 8 C 0.090 3.910 9 H 0.055 0.945 10 C 0.085 3.915 11 N -0.611 5.611 12 C 0.537 3.463 13 O -0.560 6.560 14 C -0.107 4.107 15 S -0.175 6.175 16 C -0.529 4.529 17 H 0.064 0.936 18 C 0.047 3.953 19 N -0.915 5.915 20 Si 0.913 3.087 21 H -0.263 1.263 22 H -0.258 1.258 23 H -0.237 1.237 24 C 0.066 3.934 25 C 0.049 3.951 26 O -0.367 6.367 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.341 0.659 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.277 0.723 44 H 0.094 0.906 45 H 0.103 0.897 46 H 0.131 0.869 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.809 -23.527 -22.895 32.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.320 6.320 4 C -0.014 4.014 5 C -0.067 4.067 6 N -0.317 5.317 7 C -0.054 4.054 8 C 0.031 3.969 9 H 0.073 0.927 10 C -0.038 4.038 11 N -0.346 5.346 12 C 0.325 3.675 13 O -0.438 6.438 14 C -0.258 4.258 15 S 0.052 5.948 16 C -0.677 4.677 17 H 0.082 0.918 18 C -0.159 4.159 19 N -0.553 5.553 20 Si 0.735 3.265 21 H -0.187 1.187 22 H -0.183 1.183 23 H -0.161 1.161 24 C -0.056 4.056 25 C -0.028 4.028 26 O -0.285 6.285 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.159 0.841 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.087 0.913 44 H 0.112 0.888 45 H 0.121 0.879 46 H 0.149 0.851 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.983 -22.983 -23.401 32.859 hybrid contribution 0.278 0.290 1.223 1.287 sum -1.705 -22.693 -22.178 31.776 Atomic orbital electron populations 1.21740 0.93591 1.02971 1.02393 1.22582 0.96001 0.83538 1.00437 1.88007 1.21599 1.26923 1.95439 1.22595 0.81478 0.96410 1.00868 1.22015 0.98320 0.93538 0.92865 1.60242 1.64986 1.01896 1.04561 1.21852 0.98523 0.89280 0.95788 1.22397 0.82781 0.93067 0.98684 0.92736 1.22326 1.00008 0.93808 0.87666 1.48101 1.10700 1.50990 1.24777 1.20043 0.86278 0.77910 0.83295 1.90673 1.16818 1.60842 1.75450 1.23273 1.02239 1.03091 0.97168 1.84720 1.16937 1.65945 1.27212 1.22438 0.97506 1.37491 1.10219 0.91802 1.25541 1.02538 0.94079 0.93715 1.70008 1.37969 1.34853 1.12447 0.85883 0.80384 0.80937 0.79263 1.18733 1.18267 1.16134 1.22763 0.79391 0.98779 1.04703 1.23083 1.01418 0.91342 0.87003 1.88092 1.20164 1.82380 1.37909 0.92882 0.92497 0.89449 0.92598 0.93165 0.91448 0.92963 0.91984 0.90782 0.84082 0.92100 0.89930 0.89257 0.89391 0.86928 0.86860 0.91342 0.88777 0.87855 0.85143 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 71.99 0.74 -1.03 16 2 C 0.05 0.64 6.66 71.99 0.48 1.12 16 3 O -0.40 -7.17 10.29 -148.98 -1.53 -8.70 16 4 C 0.06 0.78 6.22 71.98 0.45 1.22 16 5 C 0.06 0.78 6.07 86.30 0.52 1.30 16 6 N -0.69 -11.04 6.32 -513.88 -3.25 -14.29 16 7 C 0.08 1.17 5.38 86.30 0.46 1.64 16 8 C 0.09 1.74 2.98 30.69 0.09 1.83 16 9 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 10 C 0.08 1.90 5.93 86.35 0.51 2.41 16 11 N -0.61 -16.09 3.02 -817.31 -2.47 -18.55 16 12 C 0.54 19.04 7.73 87.66 0.68 19.71 16 13 O -0.56 -24.06 15.33 -3.05 -0.05 -24.10 16 14 C -0.11 -4.06 4.53 71.23 0.32 -3.74 16 15 S -0.17 -8.82 18.55 -56.49 -1.05 -9.87 16 16 C -0.53 -30.61 10.04 67.95 0.68 -29.92 16 17 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 18 C 0.05 2.74 5.50 84.86 0.47 3.20 16 19 N -0.91 -55.35 13.97 21.65 0.30 -55.05 16 20 Si 0.91 44.80 27.74 68.60 1.90 46.71 16 21 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.24 -11.63 6.74 99.48 0.67 -10.96 16 24 C 0.07 1.29 6.54 86.36 0.56 1.86 16 25 C 0.05 0.87 6.98 72.08 0.50 1.37 16 26 O -0.37 -7.77 10.25 -148.98 -1.53 -9.30 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.34 5.09 8.73 -89.70 -0.78 4.31 16 37 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 2.24 7.08 -2.39 -0.02 2.22 16 40 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.11 3.94 8.02 -2.39 -0.02 3.92 16 42 H 0.11 3.93 7.66 -2.39 -0.02 3.91 16 43 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.10 1.96 6.05 -2.38 -0.01 1.95 16 46 H 0.13 1.71 8.14 -2.38 -0.02 1.69 16 47 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -75.26 395.41 -1.06 -76.32 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.13 Total: 15.86 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 6.48 Total: 0.99 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -5.41 Total: -87.89 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -3.11 Total: -42.10 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.90 Total: 46.71 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.05 Total: -9.87 kcal Total: -75.26 -1.06 -76.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570131526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.694 kcal (2) G-P(sol) polarization free energy of solvation -75.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds