Wall clock time and date at job start Tue Mar 31 2020 17:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.47051 * 2 1 4 4 C 1.36931 * 120.00270 * 266.88778 * 3 2 1 5 5 H 1.08004 * 119.99954 * 323.98364 * 4 3 2 6 6 C 1.38807 * 120.00319 * 143.99078 * 4 3 2 7 7 N 1.31627 * 119.99821 * 337.07073 * 6 4 3 8 8 Si 1.86800 * 120.00322 * 157.07659 * 6 4 3 9 9 H 1.48498 * 109.47133 * 59.99585 * 8 6 4 10 10 H 1.48499 * 109.47173 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46767 * 299.99619 * 8 6 4 12 12 C 1.46503 * 119.99637 * 86.88065 * 3 2 1 13 13 C 1.53008 * 109.46701 * 90.00185 * 12 3 2 14 14 N 1.46503 * 109.47065 * 179.97438 * 13 12 3 15 15 C 1.34774 * 120.00079 * 180.02562 * 14 13 12 16 16 O 1.21286 * 119.99710 * 355.01341 * 15 14 13 17 17 C 1.50700 * 119.99845 * 175.01286 * 15 14 13 18 18 S 1.81403 * 110.43545 * 308.68250 * 17 15 14 19 19 C 1.81394 * 101.92091 * 295.52829 * 18 17 15 20 20 O 1.42098 * 108.57558 * 50.01662 * 18 17 15 21 21 O 1.42102 * 108.57590 * 181.04187 * 18 17 15 22 22 C 1.54888 * 110.48385 * 185.99726 * 17 15 14 23 23 C 1.54887 * 102.75138 * 279.26561 * 22 17 15 24 24 C 1.54263 * 104.19535 * 322.05806 * 23 22 17 25 25 C 1.53876 * 106.59723 * 23.61049 * 24 23 22 26 26 H 1.09001 * 109.47254 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47385 * 299.99975 * 1 2 3 28 28 H 1.09001 * 109.46872 * 59.99800 * 1 2 3 29 29 H 1.08999 * 109.47186 * 240.00400 * 2 1 3 30 30 H 1.09001 * 109.46872 * 120.00200 * 2 1 3 31 31 H 0.96995 * 119.99769 * 180.02562 * 7 6 4 32 32 H 1.08995 * 109.47300 * 330.00623 * 12 3 2 33 33 H 1.08996 * 109.47011 * 209.99683 * 12 3 2 34 34 H 1.08996 * 109.46978 * 299.99518 * 13 12 3 35 35 H 1.08995 * 109.46886 * 60.00184 * 13 12 3 36 36 H 0.97003 * 119.99580 * 359.97438 * 14 13 12 37 37 H 1.09003 * 109.47292 * 65.09812 * 19 18 17 38 38 H 1.09003 * 109.47087 * 185.09897 * 19 18 17 39 39 H 1.09003 * 109.47526 * 305.09929 * 19 18 17 40 40 H 1.09003 * 110.75691 * 37.58352 * 22 17 15 41 41 H 1.09000 * 110.75878 * 160.94884 * 22 17 15 42 42 H 1.08998 * 110.48663 * 203.37798 * 23 22 17 43 43 H 1.08999 * 110.48845 * 80.73450 * 23 22 17 44 44 H 1.08998 * 110.03560 * 264.32661 * 24 23 22 45 45 H 1.08995 * 110.03306 * 142.89211 * 24 23 22 46 46 H 1.09007 * 110.02962 * 240.71415 * 25 24 23 47 47 H 1.09004 * 110.03184 * 119.28878 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3073 2.0054 -1.1841 5 1 2.7400 1.4439 -1.9989 6 6 2.0442 3.3596 -1.3371 7 7 1.1419 3.9447 -0.5781 8 14 2.9706 4.3519 -2.6204 9 1 2.7134 3.7820 -3.9673 10 1 2.5083 5.7627 -2.5838 11 1 4.4260 4.2998 -2.3305 12 6 2.1974 2.0948 1.2669 13 6 3.6178 1.8631 1.7864 14 7 3.7972 2.5771 3.0530 15 6 4.9786 2.5174 3.6989 16 8 5.8631 1.8011 3.2799 17 6 5.2004 3.3406 4.9415 18 16 4.7657 5.0754 4.6380 19 6 5.9914 5.5560 3.3902 20 8 3.4748 5.1216 4.0459 21 8 5.0120 5.8180 5.8242 22 6 6.6703 3.2219 5.4150 23 6 6.6764 1.8730 6.1763 24 6 5.3158 1.8424 6.9026 25 6 4.3773 2.7754 6.1175 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.9578 4.8909 -0.6853 32 1 1.4785 1.7241 1.9975 33 1 2.0379 3.1614 1.1089 34 1 3.7774 0.7965 1.9444 35 1 4.3368 2.2338 1.0558 36 1 3.0658 3.0935 3.4263 37 1 5.8202 4.9888 2.4753 38 1 5.8975 6.6215 3.1801 39 1 6.9932 5.3466 3.7653 40 1 7.3491 3.1876 4.5629 41 1 6.9285 4.0436 6.0830 42 1 7.4941 1.8451 6.8965 43 1 6.7543 1.0406 5.4769 44 1 5.4302 2.2021 7.9251 45 1 4.9169 0.8280 6.9056 46 1 4.0363 3.5880 6.7591 47 1 3.5229 2.2139 5.7396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691045079.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:42 Heat of formation + Delta-G solvation = -90.728690 kcal Electronic energy + Delta-G solvation = -28629.119795 eV Core-core repulsion = 24746.913110 eV Total energy + Delta-G solvation = -3882.206684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.28805 -37.65314 -36.91681 -36.31004 -36.14530 -34.23526 -31.82298 -30.63090 -30.09977 -29.15555 -28.67359 -27.30902 -24.16900 -22.97802 -21.78821 -20.83328 -20.43468 -20.00162 -18.97116 -17.94094 -16.80999 -16.52798 -16.20523 -15.91058 -15.62285 -15.13951 -15.05394 -14.58947 -14.25207 -13.93075 -13.69652 -13.60027 -13.40337 -13.31485 -13.10107 -12.73142 -12.40807 -12.32862 -12.19593 -12.17350 -11.90974 -11.78843 -11.53959 -11.32776 -11.23877 -11.17481 -11.08958 -10.89901 -10.70824 -10.66325 -10.62884 -10.37419 -10.07321 -9.95461 -9.79314 -9.64388 -8.67944 -8.50428 -6.65635 -5.82542 -3.38235 -0.30297 2.29395 2.73093 3.06321 3.34902 3.38086 3.41708 3.43639 3.68015 4.05399 4.14384 4.45723 4.60147 4.65510 4.76514 4.93839 4.95696 5.05977 5.15139 5.29190 5.38161 5.44702 5.54518 5.56288 5.61506 5.65014 5.85173 5.86958 6.05363 6.11718 6.13096 6.17690 6.39233 6.49074 6.53356 6.64914 6.74105 6.96071 6.99442 7.24568 7.59376 7.75855 7.80612 8.31117 8.47838 9.13987 9.77094 10.34696 11.18291 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013529 B = 0.004224 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.105215 B = 6627.773853 C = 7633.737451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.266 4.266 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.881 5.881 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.283 1.283 12 C 0.134 3.866 13 C 0.098 3.902 14 N -0.714 5.714 15 C 0.530 3.470 16 O -0.521 6.521 17 C -0.577 4.577 18 S 2.423 3.577 19 C -0.653 4.653 20 O -0.918 6.918 21 O -0.930 6.930 22 C -0.091 4.091 23 C -0.113 4.113 24 C -0.118 4.118 25 C -0.092 4.092 26 H 0.030 0.970 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.031 0.969 31 H 0.257 0.743 32 H 0.030 0.970 33 H 0.105 0.895 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.410 0.590 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.029 -0.137 14.653 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.395 4.395 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.209 1.209 12 C 0.007 3.993 13 C -0.027 4.027 14 N -0.369 5.369 15 C 0.312 3.688 16 O -0.398 6.398 17 C -0.668 4.668 18 S 2.604 3.396 19 C -0.803 4.803 20 O -0.914 6.914 21 O -0.927 6.927 22 C -0.130 4.130 23 C -0.152 4.152 24 C -0.156 4.156 25 C -0.130 4.130 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.122 0.878 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.248 0.752 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.102 0.898 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.863 0.018 14.666 17.136 hybrid contribution 0.613 0.416 -0.878 1.148 sum 9.475 0.434 13.789 16.736 Atomic orbital electron populations 1.22270 0.99616 0.98389 1.01930 1.20912 0.92025 0.87289 0.98250 1.43671 1.74397 1.10091 1.01830 1.19013 1.35490 0.92421 0.92594 0.91998 1.25137 0.96588 0.98889 0.98081 1.69984 1.29639 1.11261 1.41397 0.86523 0.80200 0.79292 0.81733 1.20651 1.21539 1.20903 1.21061 0.89310 1.02348 0.86622 1.22465 1.02958 0.95222 0.82067 1.46459 1.13590 1.51861 1.24955 1.19072 0.83618 0.83420 0.82718 1.90670 1.43210 1.39319 1.66574 1.31216 1.08522 1.23315 1.03748 1.08028 0.77535 0.76940 0.77134 1.30229 1.18226 1.13030 1.18807 1.93624 1.35023 1.84825 1.77958 1.93590 1.86448 1.67200 1.45509 1.22364 0.89310 1.00245 1.01055 1.22275 0.96781 0.97283 0.98820 1.22099 0.94998 0.99513 0.99004 1.21964 0.98017 1.00392 0.92651 0.95080 0.93858 0.92601 0.93653 0.95065 0.93316 0.95158 0.87762 0.92826 0.91381 0.75211 0.84615 0.84686 0.84985 0.88809 0.89373 0.91036 0.90078 0.90954 0.91070 0.89827 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 10.24 37.16 0.38 -2.82 16 2 C 0.14 2.94 6.39 -4.04 -0.03 2.91 16 3 N -0.58 -13.96 2.44 -173.23 -0.42 -14.38 16 4 C -0.27 -7.05 9.45 -15.06 -0.14 -7.19 16 5 H 0.06 1.65 7.93 -52.48 -0.42 1.23 16 6 C 0.01 0.38 4.93 -17.43 -0.09 0.29 16 7 N -0.88 -24.64 11.46 55.49 0.64 -24.01 16 8 Si 0.89 21.13 29.61 -169.99 -5.03 16.09 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.13 3.00 5.42 -4.04 -0.02 2.98 16 13 C 0.10 1.94 6.00 -4.04 -0.02 1.91 16 14 N -0.71 -11.93 5.14 -60.29 -0.31 -12.24 16 15 C 0.53 8.06 5.97 -10.99 -0.07 7.99 16 16 O -0.52 -9.24 14.90 5.55 0.08 -9.16 16 17 C -0.58 -6.78 0.60 -90.12 -0.05 -6.83 16 18 S 2.42 29.36 4.38 -107.50 -0.47 28.89 16 19 C -0.65 -6.50 10.12 101.05 1.02 -5.47 16 20 O -0.92 -14.17 15.69 -57.83 -0.91 -15.08 16 21 O -0.93 -12.49 17.49 -57.83 -1.01 -13.50 16 22 C -0.09 -0.90 4.66 -24.74 -0.12 -1.01 16 23 C -0.11 -1.09 6.50 -25.07 -0.16 -1.25 16 24 C -0.12 -1.07 6.80 -25.61 -0.17 -1.24 16 25 C -0.09 -0.95 5.94 -25.61 -0.15 -1.10 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 0.92 8.01 -51.93 -0.42 0.51 16 30 H 0.03 0.59 8.10 -51.93 -0.42 0.17 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 33 H 0.10 2.65 5.46 -51.93 -0.28 2.37 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 36 H 0.41 6.56 6.41 -40.82 -0.26 6.30 16 37 H 0.14 1.49 8.09 -51.92 -0.42 1.07 16 38 H 0.13 1.13 8.14 -51.92 -0.42 0.71 16 39 H 0.13 0.96 7.41 -51.92 -0.38 0.57 16 40 H 0.09 0.91 7.37 -51.93 -0.38 0.53 16 41 H 0.09 0.68 7.78 -51.93 -0.40 0.28 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.94 7.39 -51.93 -0.38 0.55 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.08 0.76 7.56 -51.93 -0.39 0.37 16 47 H 0.09 0.90 7.83 -51.93 -0.41 0.49 16 LS Contribution 384.42 15.07 5.79 5.79 Total: -1.00 -32.65 384.42 -9.20 -41.85 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -7.93 Total: 6.57 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 0.38 Total: -10.83 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.10 Total: -50.62 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -1.84 Total: -37.74 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.09 kcal Atomic # 16 Polarization: 29.36 SS G_CDS: -0.47 Total: 28.89 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.65 -9.20 -41.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691045079.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.879 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds