Wall clock time and date at job start Tue Mar 31 2020 17:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.47051 * 2 1 4 4 C 1.36931 * 120.00270 * 266.88778 * 3 2 1 5 5 H 1.08004 * 119.99954 * 323.98364 * 4 3 2 6 6 C 1.38807 * 120.00319 * 143.99078 * 4 3 2 7 7 N 1.31627 * 119.99821 * 337.07073 * 6 4 3 8 8 Si 1.86800 * 120.00322 * 157.07659 * 6 4 3 9 9 H 1.48498 * 109.47133 * 59.99585 * 8 6 4 10 10 H 1.48499 * 109.47173 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46767 * 299.99619 * 8 6 4 12 12 C 1.46503 * 119.99637 * 86.88065 * 3 2 1 13 13 C 1.53008 * 109.46701 * 90.00185 * 12 3 2 14 14 N 1.46503 * 109.47065 * 179.97438 * 13 12 3 15 15 C 1.34774 * 120.00079 * 180.02562 * 14 13 12 16 16 O 1.21286 * 119.99710 * 355.01341 * 15 14 13 17 17 C 1.50700 * 119.99845 * 175.01286 * 15 14 13 18 18 S 1.81403 * 110.43545 * 308.68250 * 17 15 14 19 19 C 1.81394 * 101.92091 * 295.52829 * 18 17 15 20 20 O 1.42098 * 108.57558 * 50.01662 * 18 17 15 21 21 O 1.42102 * 108.57590 * 181.04187 * 18 17 15 22 22 C 1.54888 * 110.48385 * 185.99726 * 17 15 14 23 23 C 1.54887 * 102.75138 * 279.26561 * 22 17 15 24 24 C 1.54263 * 104.19535 * 322.05806 * 23 22 17 25 25 C 1.53876 * 106.59723 * 23.61049 * 24 23 22 26 26 H 1.09001 * 109.47254 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47385 * 299.99975 * 1 2 3 28 28 H 1.09001 * 109.46872 * 59.99800 * 1 2 3 29 29 H 1.08999 * 109.47186 * 240.00400 * 2 1 3 30 30 H 1.09001 * 109.46872 * 120.00200 * 2 1 3 31 31 H 0.96995 * 119.99769 * 180.02562 * 7 6 4 32 32 H 1.08995 * 109.47300 * 330.00623 * 12 3 2 33 33 H 1.08996 * 109.47011 * 209.99683 * 12 3 2 34 34 H 1.08996 * 109.46978 * 299.99518 * 13 12 3 35 35 H 1.08995 * 109.46886 * 60.00184 * 13 12 3 36 36 H 0.97003 * 119.99580 * 359.97438 * 14 13 12 37 37 H 1.09003 * 109.47292 * 65.09812 * 19 18 17 38 38 H 1.09003 * 109.47087 * 185.09897 * 19 18 17 39 39 H 1.09003 * 109.47526 * 305.09929 * 19 18 17 40 40 H 1.09003 * 110.75691 * 37.58352 * 22 17 15 41 41 H 1.09000 * 110.75878 * 160.94884 * 22 17 15 42 42 H 1.08998 * 110.48663 * 203.37798 * 23 22 17 43 43 H 1.08999 * 110.48845 * 80.73450 * 23 22 17 44 44 H 1.08998 * 110.03560 * 264.32661 * 24 23 22 45 45 H 1.08995 * 110.03306 * 142.89211 * 24 23 22 46 46 H 1.09007 * 110.02962 * 240.71415 * 25 24 23 47 47 H 1.09004 * 110.03184 * 119.28878 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3073 2.0054 -1.1841 5 1 2.7400 1.4439 -1.9989 6 6 2.0442 3.3596 -1.3371 7 7 1.1419 3.9447 -0.5781 8 14 2.9706 4.3519 -2.6204 9 1 2.7134 3.7820 -3.9673 10 1 2.5083 5.7627 -2.5838 11 1 4.4260 4.2998 -2.3305 12 6 2.1974 2.0948 1.2669 13 6 3.6178 1.8631 1.7864 14 7 3.7972 2.5771 3.0530 15 6 4.9786 2.5174 3.6989 16 8 5.8631 1.8011 3.2799 17 6 5.2004 3.3406 4.9415 18 16 4.7657 5.0754 4.6380 19 6 5.9914 5.5560 3.3902 20 8 3.4748 5.1216 4.0459 21 8 5.0120 5.8180 5.8242 22 6 6.6703 3.2219 5.4150 23 6 6.6764 1.8730 6.1763 24 6 5.3158 1.8424 6.9026 25 6 4.3773 2.7754 6.1175 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.9578 4.8909 -0.6853 32 1 1.4785 1.7241 1.9975 33 1 2.0379 3.1614 1.1089 34 1 3.7774 0.7965 1.9444 35 1 4.3368 2.2338 1.0558 36 1 3.0658 3.0935 3.4263 37 1 5.8202 4.9888 2.4753 38 1 5.8975 6.6215 3.1801 39 1 6.9932 5.3466 3.7653 40 1 7.3491 3.1876 4.5629 41 1 6.9285 4.0436 6.0830 42 1 7.4941 1.8451 6.8965 43 1 6.7543 1.0406 5.4769 44 1 5.4302 2.2021 7.9251 45 1 4.9169 0.8280 6.9056 46 1 4.0363 3.5880 6.7591 47 1 3.5229 2.2139 5.7396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691045079.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:41 Heat of formation + Delta-G solvation = -113.367098 kcal Electronic energy + Delta-G solvation = -28630.101470 eV Core-core repulsion = 24746.913110 eV Total energy + Delta-G solvation = -3883.188360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.45665 -38.71885 -38.14206 -37.74401 -37.28847 -35.71968 -33.77521 -31.87375 -31.08608 -30.43715 -29.45569 -28.96297 -25.98538 -24.42308 -23.11614 -21.84816 -21.57442 -21.46062 -20.13990 -19.06048 -18.43213 -17.70076 -17.20342 -17.08340 -16.91438 -16.74426 -16.25835 -16.02687 -15.66497 -15.55113 -15.04793 -14.62265 -14.36699 -14.21873 -14.15542 -14.14335 -13.98987 -13.91529 -13.39395 -13.25427 -13.07364 -12.86267 -12.81784 -12.64896 -12.63150 -12.43829 -12.27816 -12.26725 -12.16230 -12.06330 -11.97303 -11.76149 -11.60407 -11.50739 -11.37005 -10.92443 -10.54484 -10.13044 -8.62129 -7.84312 -5.43559 -1.25651 1.24629 1.45460 1.48248 1.54672 1.62231 1.85114 2.41720 2.51364 2.70698 3.12953 3.23459 3.28081 3.56188 3.81516 3.91407 3.99557 4.08744 4.20170 4.29197 4.33792 4.35459 4.43738 4.45711 4.62120 4.69698 4.74874 4.80817 4.82127 4.88239 4.90440 4.94417 5.04779 5.14306 5.17556 5.19908 5.29633 5.32575 5.44703 5.56538 5.67197 5.80002 6.39445 6.47504 7.00760 7.15523 7.83830 8.36350 9.12855 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013529 B = 0.004224 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.105215 B = 6627.773853 C = 7633.737451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.136 3.864 3 N -0.596 5.596 4 C -0.273 4.273 5 H 0.058 0.942 6 C -0.030 4.030 7 N -0.909 5.909 8 Si 0.948 3.052 9 H -0.275 1.275 10 H -0.292 1.292 11 H -0.280 1.280 12 C 0.140 3.860 13 C 0.118 3.882 14 N -0.717 5.717 15 C 0.535 3.465 16 O -0.546 6.546 17 C -0.568 4.568 18 S 2.427 3.573 19 C -0.650 4.650 20 O -0.958 6.958 21 O -0.942 6.942 22 C -0.096 4.096 23 C -0.115 4.115 24 C -0.117 4.117 25 C -0.101 4.101 26 H 0.067 0.933 27 H 0.034 0.966 28 H 0.027 0.973 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.253 0.747 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.045 0.955 36 H 0.414 0.586 37 H 0.124 0.876 38 H 0.153 0.847 39 H 0.163 0.837 40 H 0.094 0.906 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.056 0.944 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.549 -0.260 15.979 19.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.011 3.989 3 N -0.317 5.317 4 C -0.403 4.403 5 H 0.075 0.925 6 C -0.228 4.228 7 N -0.552 5.552 8 Si 0.776 3.224 9 H -0.200 1.200 10 H -0.218 1.218 11 H -0.206 1.206 12 C 0.012 3.988 13 C -0.008 4.008 14 N -0.372 5.372 15 C 0.319 3.681 16 O -0.423 6.423 17 C -0.660 4.660 18 S 2.611 3.389 19 C -0.802 4.802 20 O -0.955 6.955 21 O -0.939 6.939 22 C -0.134 4.134 23 C -0.153 4.153 24 C -0.155 4.155 25 C -0.140 4.140 26 H 0.086 0.914 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.252 0.748 37 H 0.143 0.857 38 H 0.171 0.829 39 H 0.182 0.818 40 H 0.113 0.887 41 H 0.134 0.866 42 H 0.114 0.886 43 H 0.075 0.925 44 H 0.113 0.887 45 H 0.088 0.912 46 H 0.116 0.884 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.369 -0.119 16.023 19.085 hybrid contribution 0.173 0.386 -1.265 1.334 sum 10.542 0.267 14.758 18.138 Atomic orbital electron populations 1.22124 0.98724 1.00158 1.00030 1.21067 0.92694 0.85776 0.99410 1.43901 1.75011 1.11180 1.01630 1.19211 1.34944 0.92856 0.93325 0.92482 1.25744 0.97322 0.99709 1.00020 1.70105 1.30985 1.11029 1.43057 0.85655 0.79044 0.77784 0.79931 1.20048 1.21757 1.20594 1.20902 0.90941 1.00487 0.86441 1.21932 1.00508 0.95369 0.82961 1.46370 1.14685 1.51978 1.24188 1.19510 0.82382 0.83029 0.83224 1.90660 1.43743 1.40464 1.67450 1.31178 1.10605 1.21980 1.02217 1.07721 0.77265 0.76755 0.77128 1.30217 1.18830 1.14069 1.17115 1.93578 1.37952 1.85388 1.78604 1.93571 1.86636 1.67366 1.46333 1.22570 0.87576 1.01499 1.01724 1.22287 0.98024 0.96120 0.98873 1.22146 0.94214 0.99252 0.99899 1.22149 0.98131 1.01239 0.92448 0.91419 0.94715 0.95417 0.93403 0.92899 0.93820 0.94342 0.90693 0.92681 0.93687 0.74781 0.85696 0.82873 0.81838 0.88707 0.86588 0.88553 0.92549 0.88666 0.91153 0.88380 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.83 10.24 71.98 0.74 -5.09 16 2 C 0.14 5.55 6.39 86.38 0.55 6.10 16 3 N -0.60 -29.00 2.44 -701.98 -1.71 -30.71 16 4 C -0.27 -14.69 9.45 84.03 0.79 -13.90 16 5 H 0.06 3.07 7.93 -2.91 -0.02 3.04 16 6 C -0.03 -1.61 4.93 84.86 0.42 -1.20 16 7 N -0.91 -52.05 11.46 21.65 0.25 -51.80 16 8 Si 0.95 43.90 29.61 68.60 2.03 45.93 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 C 0.14 6.38 5.42 86.38 0.47 6.85 16 13 C 0.12 4.76 6.00 86.38 0.52 5.28 16 14 N -0.72 -24.25 5.14 -463.05 -2.38 -26.62 16 15 C 0.53 16.08 5.97 87.66 0.52 16.60 16 16 O -0.55 -19.18 14.90 -3.05 -0.05 -19.23 16 17 C -0.57 -12.59 0.60 -10.47 -0.01 -12.60 16 18 S 2.43 56.20 4.38 -56.49 -0.25 55.96 16 19 C -0.65 -11.75 10.12 113.37 1.15 -10.60 16 20 O -0.96 -29.92 15.69 -127.37 -2.00 -31.92 16 21 O -0.94 -23.57 17.49 -127.37 -2.23 -25.80 16 22 C -0.10 -1.64 4.66 31.88 0.15 -1.49 16 23 C -0.11 -1.94 6.50 31.67 0.21 -1.73 16 24 C -0.12 -1.84 6.80 31.32 0.21 -1.63 16 25 C -0.10 -1.93 5.94 31.32 0.19 -1.75 16 26 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 27 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.91 8.01 -2.39 -0.02 1.89 16 30 H 0.05 1.92 8.10 -2.39 -0.02 1.90 16 31 H 0.25 14.12 8.31 -92.71 -0.77 13.34 16 32 H 0.04 1.65 8.07 -2.39 -0.02 1.63 16 33 H 0.08 3.95 5.46 -2.39 -0.01 3.94 16 34 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.41 13.55 6.41 -92.71 -0.59 12.96 16 37 H 0.12 2.65 8.09 -2.39 -0.02 2.63 16 38 H 0.15 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.16 1.87 7.41 -2.39 -0.02 1.85 16 40 H 0.09 1.62 7.37 -2.39 -0.02 1.60 16 41 H 0.12 1.37 7.78 -2.39 -0.02 1.35 16 42 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.06 1.24 7.39 -2.39 -0.02 1.22 16 44 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.10 1.60 7.56 -2.38 -0.02 1.58 16 47 H 0.08 1.64 7.83 -2.38 -0.02 1.62 16 Total: -1.00 -70.96 384.42 -0.06 -71.02 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.36 Total: 28.34 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 5.91 Total: -15.16 kcal Atomic # 7 Polarization: -105.30 SS G_CDS: -3.84 Total: -109.14 kcal Atomic # 8 Polarization: -72.68 SS G_CDS: -4.27 Total: -76.95 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 56.20 SS G_CDS: -0.25 Total: 55.96 kcal Total: -70.96 -0.06 -71.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691045079.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.344 kcal (2) G-P(sol) polarization free energy of solvation -70.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds