Wall clock time and date at job start Tue Mar 31 2020 18:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21273 * 120.00543 * 2 1 4 4 N 1.34782 * 119.99602 * 179.97438 * 2 1 3 5 5 C 1.39422 * 120.00019 * 174.93311 * 4 2 1 6 6 C 1.39014 * 119.63596 * 185.08778 * 5 4 2 7 7 C 1.39552 * 118.93775 * 180.27251 * 6 5 4 8 8 C 1.48157 * 120.88791 * 179.73369 * 7 6 5 9 9 O 1.21514 * 119.99973 * 6.60513 * 8 7 6 10 10 N 1.34778 * 120.00159 * 186.60357 * 8 7 6 11 11 C 1.47026 * 125.64535 * 354.42405 * 10 8 7 12 12 C 1.54328 * 107.27202 * 181.09570 * 11 10 8 13 13 C 1.55160 * 102.93831 * 22.18958 * 12 11 10 14 14 H 1.09005 * 111.03488 * 82.59249 * 13 12 11 15 15 C 1.53001 * 111.00040 * 206.42314 * 13 12 11 16 16 N 1.46501 * 109.47075 * 178.65291 * 15 13 12 17 17 C 1.36935 * 120.00301 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99715 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00308 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99874 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00280 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47640 * 179.97438 * 21 19 17 23 23 H 1.48507 * 109.46804 * 299.99632 * 21 19 17 24 24 H 1.48499 * 109.47117 * 59.99365 * 21 19 17 25 25 C 1.47420 * 125.65190 * 174.46466 * 10 8 7 26 26 C 1.39981 * 118.22481 * 359.45699 * 7 6 5 27 27 C 1.38002 * 119.15267 * 0.27828 * 26 7 6 28 28 N 1.31878 * 120.99408 * 359.97438 * 27 26 7 29 29 H 1.08998 * 109.47436 * 240.01251 * 1 2 3 30 30 H 1.08998 * 109.46462 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47098 * 120.00369 * 1 2 3 32 32 H 0.97002 * 120.00161 * 354.93050 * 4 2 1 33 33 H 1.08002 * 120.53344 * 0.02985 * 6 5 4 34 34 H 1.09005 * 109.88377 * 300.50928 * 11 10 8 35 35 H 1.08994 * 109.88537 * 61.52140 * 11 10 8 36 36 H 1.08997 * 110.71875 * 263.82887 * 12 11 10 37 37 H 1.08994 * 110.72251 * 140.55290 * 12 11 10 38 38 H 1.09000 * 109.47416 * 58.65684 * 15 13 12 39 39 H 1.08999 * 109.47495 * 298.65450 * 15 13 12 40 40 H 0.97002 * 120.00236 * 359.97438 * 16 15 13 41 41 H 0.96997 * 119.99908 * 180.02562 * 20 19 17 42 42 H 1.09000 * 110.36936 * 36.99344 * 25 10 8 43 43 H 1.09006 * 110.45992 * 274.72268 * 25 10 8 44 44 H 1.08002 * 120.42164 * 180.25582 * 26 7 6 45 45 H 1.08003 * 119.50149 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5710 -1.1698 -0.1061 6 6 4.2502 -2.3782 -0.2117 7 6 5.6420 -2.3639 -0.3119 8 6 6.4097 -3.6265 -0.4206 9 8 5.8248 -4.6844 -0.5441 10 7 7.7567 -3.6016 -0.3824 11 6 8.5908 -2.3911 -0.3534 12 6 10.0642 -2.8502 -0.3420 13 6 9.9868 -4.2814 -0.9361 14 1 9.9622 -4.2521 -2.0255 15 6 11.1484 -5.1447 -0.4398 16 7 11.0250 -6.4951 -0.9943 17 6 11.9573 -7.4496 -0.6864 18 1 12.7838 -7.2068 -0.0350 19 6 11.8406 -8.7289 -1.2122 20 7 10.8336 -9.0247 -2.0065 21 14 13.1128 -10.0308 -0.7927 22 1 12.7633 -11.3026 -1.4750 23 1 14.4526 -9.5777 -1.2455 24 1 13.1337 -10.2472 0.6763 25 6 8.6377 -4.7834 -0.3636 26 6 6.2930 -1.1247 -0.3130 27 6 5.5427 0.0289 -0.2099 28 7 4.2286 -0.0222 -0.1117 29 1 -0.3634 -0.5136 0.8901 30 1 -0.3632 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.6987 -2.0057 0.0751 33 1 3.7096 -3.3132 -0.2123 34 1 8.3978 -1.7866 -1.2397 35 1 8.3734 -1.8125 0.5443 36 1 10.4522 -2.8758 0.6763 37 1 10.6745 -2.2035 -0.9723 38 1 11.1242 -5.1954 0.6488 39 1 12.0919 -4.7044 -0.7621 40 1 10.2824 -6.7133 -1.5791 41 1 10.7519 -9.9187 -2.3736 42 1 8.2279 -5.5722 -0.9943 43 1 8.7693 -5.1443 0.6565 44 1 7.3688 -1.0722 -0.3931 45 1 6.0392 0.9881 -0.2106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731675620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:45 Heat of formation + Delta-G solvation = 17.638524 kcal Electronic energy + Delta-G solvation = -27436.208400 eV Core-core repulsion = 23455.549671 eV Total energy + Delta-G solvation = -3980.658730 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.32222 -40.23104 -39.00291 -37.67821 -35.38302 -34.75450 -33.10058 -32.09809 -31.32781 -30.51009 -29.58981 -28.61241 -26.24045 -24.73559 -23.76874 -23.25544 -22.05731 -21.37283 -20.11777 -19.86261 -18.64708 -17.42580 -17.12625 -16.78987 -16.41937 -16.04660 -15.96430 -15.43193 -15.27182 -14.83944 -14.60678 -14.32944 -14.12102 -14.09325 -13.76385 -13.52762 -13.19555 -13.09675 -12.81716 -12.74860 -12.65818 -12.56985 -12.01555 -11.59921 -11.22560 -11.15570 -10.87105 -10.71625 -10.66148 -10.58203 -10.48522 -10.18992 -10.10162 -10.04953 -9.69338 -9.36700 -8.89395 -8.73469 -8.62523 -6.95007 -5.76992 -3.06809 0.51363 0.72783 2.23400 2.38798 2.81406 2.85315 3.43825 3.48078 3.49463 3.64323 3.96317 4.11926 4.41781 4.46184 4.53474 4.60863 4.66851 4.70668 4.79981 4.83299 4.87253 4.95602 5.15273 5.28465 5.30581 5.33089 5.43669 5.52600 5.57470 5.72225 5.78178 5.81339 5.90673 5.91999 6.04759 6.16950 6.32103 6.34234 6.37008 6.64514 6.74386 6.77556 7.39389 7.57390 7.68100 7.88710 8.00283 8.41083 9.52289 10.08729 10.42872 11.45506 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028924 B = 0.002004 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.828781 B =13969.131490 C =14806.483932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.500 3.500 3 O -0.478 6.478 4 N -0.663 5.663 5 C 0.353 3.647 6 C -0.150 4.150 7 C -0.051 4.051 8 C 0.569 3.431 9 O -0.526 6.526 10 N -0.607 5.607 11 C 0.088 3.912 12 C -0.128 4.128 13 C -0.106 4.106 14 H 0.086 0.914 15 C 0.165 3.835 16 N -0.733 5.733 17 C -0.243 4.243 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.291 1.291 23 H -0.286 1.286 24 H -0.286 1.286 25 C 0.115 3.885 26 C -0.207 4.207 27 C 0.128 3.872 28 N -0.466 5.466 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.420 0.580 33 H 0.149 0.851 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.022 0.978 39 H 0.025 0.975 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.171 0.829 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.801 20.829 4.449 27.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.287 3.713 3 O -0.347 6.347 4 N -0.311 5.311 5 C 0.122 3.878 6 C -0.174 4.174 7 C -0.063 4.063 8 C 0.357 3.643 9 O -0.403 6.403 10 N -0.340 5.340 11 C -0.034 4.034 12 C -0.166 4.166 13 C -0.125 4.125 14 H 0.104 0.896 15 C 0.037 3.963 16 N -0.378 5.378 17 C -0.375 4.375 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.213 1.213 24 H -0.213 1.213 25 C -0.006 4.006 26 C -0.228 4.228 27 C -0.030 4.030 28 N -0.181 5.181 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.257 0.743 33 H 0.166 0.834 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.218 0.782 41 H 0.066 0.934 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.188 0.812 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -17.210 21.739 4.503 28.090 hybrid contribution 0.626 -2.101 -0.030 2.193 sum -16.584 19.638 4.473 26.090 Atomic orbital electron populations 1.21948 0.90581 1.06057 1.04607 1.21115 0.90734 0.83239 0.76231 1.90839 1.70088 1.30389 1.43393 1.43711 1.03827 1.11088 1.72482 1.18319 0.84873 0.89347 0.95239 1.21551 0.93866 0.98187 1.03843 1.20066 0.93389 0.93786 0.99027 1.17774 0.80767 0.88205 0.77592 1.90815 1.68601 1.31616 1.49250 1.48407 1.04492 1.09216 1.71901 1.22584 0.91460 0.87960 1.01408 1.22737 0.94133 0.97055 1.02713 1.22598 0.94888 0.94103 1.00915 0.89572 1.20589 0.93630 0.86069 0.96031 1.42357 1.31221 1.05978 1.58204 1.19159 1.03654 0.90536 1.24104 0.91190 1.24758 0.98413 0.97658 1.00044 1.69650 1.31369 1.20561 1.36399 0.86260 0.80875 0.81246 0.77727 1.21692 1.21261 1.21264 1.22413 0.88525 0.87437 1.02253 1.23600 1.04342 0.92346 1.02522 1.22695 0.88083 0.98590 0.93592 1.67484 1.10137 1.26917 1.13602 0.89080 0.88488 0.89022 0.74337 0.83369 0.90373 0.90353 0.89998 0.89635 0.95996 0.95708 0.78188 0.93391 0.89455 0.90616 0.81196 0.81774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.66 10.32 36.01 0.37 -0.29 16 2 C 0.50 4.42 7.90 -10.98 -0.09 4.34 16 3 O -0.48 -6.52 15.35 5.56 0.09 -6.43 16 4 N -0.66 -5.26 5.39 -11.44 -0.06 -5.32 16 5 C 0.35 3.89 7.42 -154.76 -1.15 2.74 16 6 C -0.15 -1.66 9.51 -38.80 -0.37 -2.03 16 7 C -0.05 -0.61 5.90 -104.68 -0.62 -1.23 16 8 C 0.57 8.43 7.83 -12.19 -0.10 8.33 16 9 O -0.53 -9.75 16.69 5.35 0.09 -9.66 16 10 N -0.61 -8.18 3.33 -171.88 -0.57 -8.75 16 11 C 0.09 0.82 4.88 -3.06 -0.01 0.81 16 12 C -0.13 -1.28 6.42 -24.89 -0.16 -1.44 16 13 C -0.11 -1.54 3.10 -88.47 -0.27 -1.81 16 14 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 15 C 0.16 3.06 5.71 -4.04 -0.02 3.04 16 16 N -0.73 -18.04 5.45 -59.91 -0.33 -18.37 16 17 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 18 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 21 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 C 0.11 1.83 6.11 -2.53 -0.02 1.81 16 26 C -0.21 -1.96 8.68 -39.02 -0.34 -2.30 16 27 C 0.13 1.26 11.16 -17.62 -0.20 1.06 16 28 N -0.47 -5.80 7.85 -12.41 -0.10 -5.90 16 29 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.10 0.40 8.12 -51.93 -0.42 -0.02 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.42 1.71 8.70 -40.82 -0.36 1.35 16 33 H 0.15 1.48 7.75 -52.49 -0.41 1.08 16 34 H 0.08 0.60 6.76 -51.93 -0.35 0.25 16 35 H 0.08 0.58 6.74 -51.93 -0.35 0.23 16 36 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 39 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.38 10.05 7.53 -40.82 -0.31 9.74 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.09 1.64 7.99 -51.93 -0.41 1.23 16 43 H 0.08 1.26 8.00 -51.93 -0.42 0.84 16 44 H 0.17 1.22 2.93 -52.96 -0.16 1.06 16 45 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 374.01 15.07 5.64 5.64 Total: -1.00 -38.07 374.01 -8.86 -46.93 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.10 Total: 6.36 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -3.22 Total: 5.70 kcal Atomic # 7 Polarization: -65.50 SS G_CDS: -0.33 Total: -65.84 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.17 Total: -16.09 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.07 -8.86 -46.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731675620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.571 kcal (2) G-P(sol) polarization free energy of solvation -38.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds