Wall clock time and date at job start Tue Mar 31 2020 18:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21273 * 120.00543 * 2 1 4 4 N 1.34782 * 119.99602 * 179.97438 * 2 1 3 5 5 C 1.39422 * 120.00019 * 174.93311 * 4 2 1 6 6 C 1.39014 * 119.63596 * 185.08778 * 5 4 2 7 7 C 1.39552 * 118.93775 * 180.27251 * 6 5 4 8 8 C 1.48157 * 120.88791 * 179.73369 * 7 6 5 9 9 O 1.21514 * 119.99973 * 6.60513 * 8 7 6 10 10 N 1.34778 * 120.00159 * 186.60357 * 8 7 6 11 11 C 1.47026 * 125.64535 * 354.42405 * 10 8 7 12 12 C 1.54328 * 107.27202 * 181.09570 * 11 10 8 13 13 C 1.55160 * 102.93831 * 22.18958 * 12 11 10 14 14 H 1.09005 * 111.03488 * 82.59249 * 13 12 11 15 15 C 1.53001 * 111.00040 * 206.42314 * 13 12 11 16 16 N 1.46501 * 109.47075 * 178.65291 * 15 13 12 17 17 C 1.36935 * 120.00301 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99715 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00308 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99874 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00280 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47640 * 179.97438 * 21 19 17 23 23 H 1.48507 * 109.46804 * 299.99632 * 21 19 17 24 24 H 1.48499 * 109.47117 * 59.99365 * 21 19 17 25 25 C 1.47420 * 125.65190 * 174.46466 * 10 8 7 26 26 C 1.39981 * 118.22481 * 359.45699 * 7 6 5 27 27 C 1.38002 * 119.15267 * 0.27828 * 26 7 6 28 28 N 1.31878 * 120.99408 * 359.97438 * 27 26 7 29 29 H 1.08998 * 109.47436 * 240.01251 * 1 2 3 30 30 H 1.08998 * 109.46462 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47098 * 120.00369 * 1 2 3 32 32 H 0.97002 * 120.00161 * 354.93050 * 4 2 1 33 33 H 1.08002 * 120.53344 * 0.02985 * 6 5 4 34 34 H 1.09005 * 109.88377 * 300.50928 * 11 10 8 35 35 H 1.08994 * 109.88537 * 61.52140 * 11 10 8 36 36 H 1.08997 * 110.71875 * 263.82887 * 12 11 10 37 37 H 1.08994 * 110.72251 * 140.55290 * 12 11 10 38 38 H 1.09000 * 109.47416 * 58.65684 * 15 13 12 39 39 H 1.08999 * 109.47495 * 298.65450 * 15 13 12 40 40 H 0.97002 * 120.00236 * 359.97438 * 16 15 13 41 41 H 0.96997 * 119.99908 * 180.02562 * 20 19 17 42 42 H 1.09000 * 110.36936 * 36.99344 * 25 10 8 43 43 H 1.09006 * 110.45992 * 274.72268 * 25 10 8 44 44 H 1.08002 * 120.42164 * 180.25582 * 26 7 6 45 45 H 1.08003 * 119.50149 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5710 -1.1698 -0.1061 6 6 4.2502 -2.3782 -0.2117 7 6 5.6420 -2.3639 -0.3119 8 6 6.4097 -3.6265 -0.4206 9 8 5.8248 -4.6844 -0.5441 10 7 7.7567 -3.6016 -0.3824 11 6 8.5908 -2.3911 -0.3534 12 6 10.0642 -2.8502 -0.3420 13 6 9.9868 -4.2814 -0.9361 14 1 9.9622 -4.2521 -2.0255 15 6 11.1484 -5.1447 -0.4398 16 7 11.0250 -6.4951 -0.9943 17 6 11.9573 -7.4496 -0.6864 18 1 12.7838 -7.2068 -0.0350 19 6 11.8406 -8.7289 -1.2122 20 7 10.8336 -9.0247 -2.0065 21 14 13.1128 -10.0308 -0.7927 22 1 12.7633 -11.3026 -1.4750 23 1 14.4526 -9.5777 -1.2455 24 1 13.1337 -10.2472 0.6763 25 6 8.6377 -4.7834 -0.3636 26 6 6.2930 -1.1247 -0.3130 27 6 5.5427 0.0289 -0.2099 28 7 4.2286 -0.0222 -0.1117 29 1 -0.3634 -0.5136 0.8901 30 1 -0.3632 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.6987 -2.0057 0.0751 33 1 3.7096 -3.3132 -0.2123 34 1 8.3978 -1.7866 -1.2397 35 1 8.3734 -1.8125 0.5443 36 1 10.4522 -2.8758 0.6763 37 1 10.6745 -2.2035 -0.9723 38 1 11.1242 -5.1954 0.6488 39 1 12.0919 -4.7044 -0.7621 40 1 10.2824 -6.7133 -1.5791 41 1 10.7519 -9.9187 -2.3736 42 1 8.2279 -5.5722 -0.9943 43 1 8.7693 -5.1443 0.6565 44 1 7.3688 -1.0722 -0.3931 45 1 6.0392 0.9881 -0.2106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731675620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:44 Heat of formation + Delta-G solvation = -10.377737 kcal Electronic energy + Delta-G solvation = -27437.423276 eV Core-core repulsion = 23455.549671 eV Total energy + Delta-G solvation = -3981.873606 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.17249 -41.17271 -39.84802 -38.87389 -36.57144 -36.02906 -34.32805 -33.44652 -32.09524 -31.90602 -30.39430 -29.59910 -27.59861 -26.10197 -24.69661 -24.49090 -23.33378 -22.18259 -21.34582 -20.78882 -19.55988 -19.01962 -18.17368 -17.75196 -17.50492 -16.91785 -16.69426 -16.60483 -16.41814 -16.16821 -15.77074 -15.27850 -15.24396 -15.03837 -14.92291 -14.77018 -14.66955 -14.09823 -13.89975 -13.71550 -13.39623 -13.25677 -13.08771 -13.06572 -12.70855 -12.62030 -12.19561 -12.10962 -11.93636 -11.79613 -11.62325 -11.57750 -11.44429 -11.23277 -11.01446 -10.92267 -10.17423 -9.81538 -9.39701 -8.99133 -7.94161 -5.23326 -0.38498 -0.04153 1.47376 1.50674 1.52903 1.56760 1.60972 1.81886 1.94394 2.56628 2.82006 3.13399 3.37037 3.39692 3.56400 3.57599 3.78743 3.85913 3.89541 3.95500 4.12071 4.19625 4.25793 4.41584 4.51513 4.53230 4.57044 4.62520 4.66220 4.66843 4.79938 4.84666 4.92510 5.00999 5.04969 5.07660 5.14915 5.20373 5.26066 5.43377 5.51002 5.60383 6.16844 6.27493 6.33179 6.85280 6.87604 7.24007 7.33649 8.10753 8.31467 9.29277 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028924 B = 0.002004 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.828781 B =13969.131490 C =14806.483932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.495 3.505 3 O -0.532 6.532 4 N -0.654 5.654 5 C 0.344 3.656 6 C -0.155 4.155 7 C -0.067 4.067 8 C 0.563 3.437 9 O -0.579 6.579 10 N -0.605 5.605 11 C 0.080 3.920 12 C -0.113 4.113 13 C -0.098 4.098 14 H 0.078 0.922 15 C 0.162 3.838 16 N -0.749 5.749 17 C -0.244 4.244 18 H 0.080 0.920 19 C -0.080 4.080 20 N -0.972 5.972 21 Si 0.975 3.025 22 H -0.299 1.299 23 H -0.275 1.275 24 H -0.278 1.278 25 C 0.119 3.881 26 C -0.190 4.190 27 C 0.127 3.873 28 N -0.496 5.496 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.436 0.564 33 H 0.150 0.850 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.027 0.973 39 H 0.036 0.964 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.044 0.956 43 H 0.064 0.936 44 H 0.198 0.802 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.178 23.328 5.322 28.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.285 3.715 3 O -0.405 6.405 4 N -0.303 5.303 5 C 0.113 3.887 6 C -0.179 4.179 7 C -0.078 4.078 8 C 0.353 3.647 9 O -0.459 6.459 10 N -0.336 5.336 11 C -0.040 4.040 12 C -0.151 4.151 13 C -0.117 4.117 14 H 0.097 0.903 15 C 0.036 3.964 16 N -0.392 5.392 17 C -0.376 4.376 18 H 0.098 0.902 19 C -0.272 4.272 20 N -0.623 5.623 21 Si 0.804 3.196 22 H -0.225 1.225 23 H -0.201 1.201 24 H -0.204 1.204 25 C -0.004 4.004 26 C -0.210 4.210 27 C -0.030 4.030 28 N -0.211 5.211 29 H 0.135 0.865 30 H 0.113 0.887 31 H 0.133 0.867 32 H 0.276 0.724 33 H 0.167 0.833 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.112 0.888 37 H 0.134 0.866 38 H 0.045 0.955 39 H 0.054 0.946 40 H 0.203 0.797 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.082 0.918 44 H 0.215 0.785 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -16.569 24.280 5.411 29.888 hybrid contribution 0.433 -2.809 -0.267 2.854 sum -16.136 21.471 5.144 27.346 Atomic orbital electron populations 1.21971 0.86503 1.06685 1.06883 1.22056 0.92565 0.82413 0.74503 1.90806 1.71500 1.32164 1.46075 1.43784 1.02917 1.12037 1.71587 1.18498 0.86111 0.88908 0.95220 1.21594 0.93903 0.98438 1.03989 1.19934 0.93591 0.93285 1.01012 1.18281 0.81113 0.88630 0.76672 1.90779 1.69703 1.33663 1.51785 1.48455 1.04318 1.09889 1.70974 1.22988 0.90188 0.86632 1.04225 1.22764 0.95119 0.93654 1.03594 1.22426 0.92233 0.96582 1.00480 0.90340 1.20792 0.95734 0.83903 0.95975 1.42634 1.30261 1.08049 1.58214 1.19638 1.03846 0.91200 1.22901 0.90193 1.25615 1.00660 1.00077 1.00817 1.69829 1.33597 1.20559 1.38317 0.85192 0.78744 0.78119 0.77588 1.22523 1.20067 1.20406 1.22148 0.89817 0.87774 1.00658 1.23814 1.05464 0.90914 1.00836 1.23262 0.87439 0.99967 0.92363 1.67555 1.11578 1.27650 1.14339 0.86516 0.88720 0.86738 0.72391 0.83260 0.87668 0.87226 0.88837 0.86576 0.95506 0.94561 0.79706 0.94142 0.93706 0.91778 0.78529 0.78692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 10.32 71.24 0.74 -0.17 16 2 C 0.50 8.33 7.90 87.66 0.69 9.03 16 3 O -0.53 -14.48 15.35 -3.01 -0.05 -14.53 16 4 N -0.65 -9.87 5.39 -308.50 -1.66 -11.53 16 5 C 0.34 7.38 7.42 132.93 0.99 8.37 16 6 C -0.15 -3.42 9.51 22.77 0.22 -3.20 16 7 C -0.07 -1.55 5.90 -19.90 -0.12 -1.66 16 8 C 0.56 16.90 7.83 86.88 0.68 17.58 16 9 O -0.58 -22.72 16.69 -3.76 -0.06 -22.78 16 10 N -0.60 -15.85 3.33 -815.99 -2.71 -18.56 16 11 C 0.08 1.19 4.88 86.73 0.42 1.62 16 12 C -0.11 -1.82 6.42 31.79 0.20 -1.62 16 13 C -0.10 -2.75 3.10 -9.40 -0.03 -2.78 16 14 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 15 C 0.16 5.89 5.71 86.38 0.49 6.39 16 16 N -0.75 -37.46 5.45 -343.45 -1.87 -39.33 16 17 C -0.24 -13.52 9.99 84.03 0.84 -12.68 16 18 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 19 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 20 N -0.97 -60.75 13.06 21.65 0.28 -60.47 16 21 Si 0.97 46.36 29.55 68.60 2.03 48.39 16 22 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 23 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 25 C 0.12 3.88 6.11 86.85 0.53 4.41 16 26 C -0.19 -3.07 8.68 22.64 0.20 -2.87 16 27 C 0.13 2.18 11.16 84.63 0.94 3.12 16 28 N -0.50 -11.79 7.85 -193.19 -1.52 -13.30 16 29 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.09 0.63 8.12 -2.39 -0.02 0.61 16 31 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.44 3.11 8.70 -92.71 -0.81 2.31 16 33 H 0.15 3.12 7.75 -2.91 -0.02 3.10 16 34 H 0.11 1.09 6.76 -2.38 -0.02 1.07 16 35 H 0.11 1.06 6.74 -2.39 -0.02 1.05 16 36 H 0.09 1.36 8.04 -2.39 -0.02 1.34 16 37 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.03 0.97 8.10 -2.39 -0.02 0.95 16 39 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.37 20.26 7.53 -92.71 -0.70 19.56 16 41 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.04 1.83 7.99 -2.39 -0.02 1.81 16 43 H 0.06 2.21 8.00 -2.38 -0.02 2.19 16 44 H 0.20 1.92 2.93 -3.36 -0.01 1.91 16 45 H 0.20 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -88.00 374.01 1.24 -86.76 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -0.46 Total: 23.99 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 7.26 Total: 21.37 kcal Atomic # 7 Polarization: -135.71 SS G_CDS: -7.48 Total: -143.20 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.11 Total: -37.31 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -88.00 1.24 -86.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731675620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.379 kcal (2) G-P(sol) polarization free energy of solvation -87.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds