Wall clock time and date at job start Tue Mar 31 2020 17:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 120.00052 * 2 1 4 4 C 1.52997 * 109.47389 * 84.99589 * 3 2 1 5 5 H 1.09007 * 109.49432 * 54.93371 * 4 3 2 6 6 C 1.53043 * 109.49647 * 174.99493 * 4 3 2 7 7 C 1.53045 * 109.53613 * 181.34928 * 6 4 3 8 8 C 1.53193 * 109.31211 * 298.63732 * 7 6 4 9 9 N 1.46927 * 108.77386 * 54.63774 * 8 7 6 10 10 C 1.34777 * 120.63303 * 126.36982 * 9 8 7 11 11 O 1.21283 * 120.00463 * 179.97438 * 10 9 8 12 12 C 1.50700 * 119.99675 * 359.72079 * 10 9 8 13 13 C 1.53004 * 109.47208 * 180.27843 * 12 10 9 14 14 C 1.50700 * 109.47208 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99770 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99720 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99854 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00129 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47118 * 90.00195 * 18 16 14 20 20 H 1.48507 * 109.46904 * 209.99852 * 18 16 14 21 21 H 1.48494 * 109.47201 * 330.00027 * 18 16 14 22 22 C 1.46925 * 118.74028 * 306.63705 * 9 8 7 23 23 S 1.65595 * 119.99738 * 179.97438 * 2 1 3 24 24 C 1.81399 * 104.45131 * 270.00220 * 23 2 1 25 25 O 1.42102 * 104.27970 * 26.07427 * 23 2 1 26 26 O 1.42099 * 104.27940 * 153.93136 * 23 2 1 27 27 H 1.09002 * 109.46755 * 90.00200 * 1 2 3 28 28 H 1.08994 * 109.47235 * 210.00185 * 1 2 3 29 29 H 1.09007 * 109.47072 * 330.00722 * 1 2 3 30 30 H 1.08997 * 109.46796 * 324.99129 * 3 2 1 31 31 H 1.09004 * 109.46671 * 204.99752 * 3 2 1 32 32 H 1.09001 * 109.45653 * 61.33198 * 6 4 3 33 33 H 1.08988 * 109.46264 * 301.37260 * 6 4 3 34 34 H 1.08996 * 109.49670 * 178.68970 * 7 6 4 35 35 H 1.09000 * 109.49698 * 58.59077 * 7 6 4 36 36 H 1.08997 * 109.59146 * 294.85081 * 8 7 6 37 37 H 1.08999 * 109.58394 * 174.42111 * 8 7 6 38 38 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 39 39 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 40 40 H 1.09000 * 109.46887 * 300.00372 * 13 12 10 41 41 H 1.08998 * 109.46846 * 59.99549 * 13 12 10 42 42 H 0.96999 * 120.00128 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.59194 * 173.14578 * 22 9 8 44 44 H 1.09004 * 109.59115 * 293.57214 * 22 9 8 45 45 H 1.08994 * 109.47207 * 59.99866 * 24 23 2 46 46 H 1.08996 * 109.47276 * 180.02562 * 24 23 2 47 47 H 1.09005 * 109.47147 * 300.00406 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7734 1.4369 5 1 2.8108 1.0010 2.0480 6 6 3.2146 3.0317 1.4504 7 6 3.3891 3.5180 2.8909 8 6 2.0182 3.8726 3.4755 9 7 1.1292 2.7114 3.3342 10 6 0.4806 2.2089 4.4034 11 8 -0.2509 1.2502 4.2736 12 6 0.6688 2.8347 5.7613 13 6 -0.1677 2.0754 6.7932 14 6 0.0200 2.7016 8.1511 15 1 0.6711 3.5555 8.2665 16 6 -0.6396 2.1843 9.2458 17 7 -0.4754 2.7305 10.4309 18 14 -1.7652 0.7070 9.0460 19 1 -0.9834 -0.5407 9.2393 20 1 -2.8514 0.7721 10.0566 21 1 -2.3556 0.7152 7.6835 22 6 0.9653 2.1047 2.0061 23 16 2.2929 -1.4341 0.0006 24 6 2.5192 -1.8254 1.7574 25 8 1.3969 -2.3564 -0.6042 26 8 3.5394 -1.1195 -0.6047 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 1.6502 2.0042 -0.5896 31 1 3.1858 1.1176 -0.4343 32 1 2.7348 3.8118 0.8593 33 1 4.1910 2.8021 1.0238 34 1 4.0286 4.4006 2.9020 35 1 3.8464 2.7293 3.4883 36 1 1.5991 4.7215 2.9354 37 1 2.1250 4.1247 4.5305 38 1 1.7213 2.7870 6.0408 39 1 0.3483 3.8760 5.7292 40 1 -1.2202 2.1231 6.5138 41 1 0.1528 1.0341 6.8254 42 1 -0.9397 2.3669 11.2010 43 1 0.3776 1.1907 2.0919 44 1 0.4585 2.8065 1.3437 45 1 1.5450 -1.9178 2.2375 46 1 3.0624 -2.7655 1.8532 47 1 3.0865 -1.0278 2.2372 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360600607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:51 Heat of formation + Delta-G solvation = -111.831600 kcal Electronic energy + Delta-G solvation = -27984.970774 eV Core-core repulsion = 24101.848999 eV Total energy + Delta-G solvation = -3883.121775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.24324 -38.15198 -37.43272 -36.38996 -36.12757 -33.61496 -33.08786 -31.65372 -31.09660 -29.75198 -28.15480 -26.51807 -25.27135 -24.46717 -22.48643 -21.41254 -20.33515 -19.18268 -18.63490 -17.91846 -17.34924 -16.77127 -16.64647 -16.30617 -15.69530 -15.39081 -15.17169 -14.75059 -14.51122 -14.10886 -13.90628 -13.83349 -13.56140 -13.43519 -13.39070 -13.21743 -12.92313 -12.79276 -12.55953 -12.45143 -12.35158 -12.33460 -11.90659 -11.82611 -11.53216 -11.34249 -11.33732 -11.11528 -11.03023 -10.99060 -10.69435 -10.17619 -10.07677 -9.82916 -9.44161 -9.25787 -9.16127 -8.58549 -8.53359 -6.07098 -4.06031 -0.05245 2.26193 2.99060 3.11608 3.33825 3.40890 3.51010 3.53127 3.82055 4.19165 4.38985 4.45596 4.46771 4.51409 4.64535 4.68021 4.78251 4.96774 5.02412 5.12755 5.14720 5.25641 5.28176 5.28372 5.39897 5.42402 5.45017 5.53345 5.57483 5.64545 5.67811 5.76262 5.79087 5.88927 5.99209 6.02036 6.06786 6.18632 6.55234 6.66255 7.30576 7.38054 7.55508 7.74856 8.43915 8.54827 8.95617 9.55917 11.05730 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014856 B = 0.003181 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.319340 B = 8800.265601 C = 9942.193210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.001 6.001 3 C 0.121 3.879 4 C -0.130 4.130 5 H 0.074 0.926 6 C -0.112 4.112 7 C -0.136 4.136 8 C 0.105 3.895 9 N -0.623 5.623 10 C 0.513 3.487 11 O -0.542 6.542 12 C -0.121 4.121 13 C 0.002 3.998 14 C -0.525 4.525 15 H 0.072 0.928 16 C 0.069 3.931 17 N -0.903 5.903 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.261 1.261 22 C 0.111 3.889 23 S 2.611 3.389 24 C -0.673 4.673 25 O -0.956 6.956 26 O -0.957 6.957 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.023 0.977 41 H 0.018 0.982 42 H 0.263 0.737 43 H 0.097 0.903 44 H 0.063 0.937 45 H 0.131 0.869 46 H 0.127 0.873 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.326 -0.823 -23.418 24.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.838 5.838 3 C -0.005 4.005 4 C -0.151 4.151 5 H 0.093 0.907 6 C -0.151 4.151 7 C -0.174 4.174 8 C -0.018 4.018 9 N -0.359 5.359 10 C 0.304 3.696 11 O -0.418 6.418 12 C -0.161 4.161 13 C -0.036 4.036 14 C -0.563 4.563 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.542 5.542 18 Si 0.704 3.296 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.186 1.186 22 C -0.011 4.011 23 S 2.703 3.297 24 C -0.823 4.823 25 O -0.946 6.946 26 O -0.948 6.948 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.041 0.959 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.150 0.850 46 H 0.146 0.854 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.100 -1.831 -24.045 25.438 hybrid contribution -0.596 -0.498 0.911 1.198 sum 7.504 -2.330 -23.134 24.431 Atomic orbital electron populations 1.21676 0.77938 1.03775 1.02494 1.57395 1.15374 1.21240 1.89785 1.21481 0.98069 0.85067 0.95861 1.22076 0.97316 0.98758 0.96920 0.90720 1.21506 0.99782 0.96577 0.97203 1.21924 0.97184 1.02070 0.96227 1.21754 0.89368 0.87794 1.02858 1.48281 1.47203 1.32261 1.08111 1.21565 0.78342 0.83183 0.86535 1.90627 1.37858 1.27630 1.85678 1.21692 1.02981 1.01186 0.90236 1.19370 0.95368 0.95517 0.93305 1.21099 1.28589 1.16073 0.90569 0.90959 1.24970 0.96282 0.96874 0.95083 1.69908 1.43439 1.41496 0.99331 0.86800 0.80954 0.83301 0.78506 1.20284 1.21400 1.18562 1.21645 0.96121 0.99579 0.83785 1.04904 0.73871 0.73288 0.77622 1.30613 1.12298 1.12110 1.27305 1.93610 1.64584 1.62594 1.73798 1.93585 1.44229 1.83050 1.73922 0.92093 0.90868 0.90210 0.89489 0.88187 0.91311 0.91197 0.90412 0.91289 0.91535 0.88830 0.89700 0.89627 0.95855 0.96408 0.92687 0.88525 0.91899 0.84997 0.85432 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 9.34 59.85 0.56 1.22 16 2 N -1.00 -8.11 3.03 -121.75 -0.37 -8.48 16 3 C 0.12 0.84 5.19 -4.04 -0.02 0.82 16 4 C -0.13 -1.03 2.53 -90.72 -0.23 -1.26 16 5 H 0.07 0.64 6.85 -51.93 -0.36 0.29 16 6 C -0.11 -0.74 5.17 -26.69 -0.14 -0.88 16 7 C -0.14 -1.03 6.08 -26.61 -0.16 -1.19 16 8 C 0.11 1.00 6.35 -3.71 -0.02 0.98 16 9 N -0.62 -7.85 2.98 -173.03 -0.52 -8.36 16 10 C 0.51 8.88 7.70 -10.98 -0.08 8.80 16 11 O -0.54 -11.22 15.40 5.55 0.09 -11.14 16 12 C -0.12 -2.26 3.98 -27.88 -0.11 -2.37 16 13 C 0.00 0.06 3.33 -27.88 -0.09 -0.04 16 14 C -0.53 -14.74 9.66 -34.44 -0.33 -15.07 16 15 H 0.07 2.11 7.99 -52.49 -0.42 1.70 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 17 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 18 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 22 C 0.11 1.14 4.34 -3.93 -0.02 1.12 16 23 S 2.61 24.17 6.02 -107.50 -0.65 23.53 16 24 C -0.67 -5.11 10.99 101.05 1.11 -4.00 16 25 O -0.96 -11.82 17.09 -57.54 -0.98 -12.81 16 26 O -0.96 -11.11 16.53 -57.54 -0.95 -12.06 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.56 7.79 -51.93 -0.40 0.16 16 29 H 0.08 0.57 5.45 -51.93 -0.28 0.29 16 30 H 0.09 0.47 8.11 -51.93 -0.42 0.05 16 31 H 0.10 0.69 6.82 -51.93 -0.35 0.34 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.40 8.14 -51.94 -0.42 -0.02 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.94 5.93 -51.93 -0.31 0.63 16 38 H 0.08 1.46 7.69 -51.92 -0.40 1.07 16 39 H 0.09 1.48 7.94 -51.93 -0.41 1.07 16 40 H 0.02 0.59 7.16 -51.93 -0.37 0.22 16 41 H 0.02 0.44 7.53 -51.93 -0.39 0.05 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 43 H 0.10 1.13 4.88 -51.93 -0.25 0.88 16 44 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 45 H 0.13 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.13 0.91 6.85 -51.92 -0.36 0.55 16 LS Contribution 375.87 15.07 5.66 5.66 Total: -1.00 -37.53 375.87 -8.95 -46.48 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -7.70 Total: -3.62 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 0.36 Total: -9.93 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.11 Total: -43.70 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -1.85 Total: -36.01 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Atomic # 16 Polarization: 24.17 SS G_CDS: -0.65 Total: 23.53 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.53 -8.95 -46.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360600607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.355 kcal (2) G-P(sol) polarization free energy of solvation -37.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds