Wall clock time and date at job start Tue Mar 31 2020 17:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36933 * 119.99825 * 2 1 4 4 H 1.08004 * 120.00325 * 190.86300 * 3 2 1 5 5 C 1.38810 * 120.00455 * 10.86779 * 3 2 1 6 6 N 1.31624 * 119.99868 * 12.45338 * 5 3 2 7 7 Si 1.86801 * 120.00602 * 192.45702 * 5 3 2 8 8 H 1.48505 * 109.46667 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47176 * 119.99544 * 7 5 3 10 10 H 1.48497 * 109.46901 * 239.99937 * 7 5 3 11 11 C 1.46501 * 119.99989 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.46697 * 84.90461 * 11 2 1 13 13 H 1.08991 * 109.70444 * 301.59924 * 12 11 2 14 14 C 1.53625 * 109.66681 * 62.19533 * 12 11 2 15 15 C 1.53037 * 109.24294 * 174.54687 * 14 12 11 16 16 C 1.53036 * 109.53830 * 298.50824 * 15 14 12 17 17 C 1.53201 * 109.31349 * 61.36300 * 16 15 14 18 18 N 1.46926 * 108.77544 * 305.36765 * 17 16 15 19 19 C 1.34770 * 120.63064 * 233.58262 * 18 17 16 20 20 O 1.21281 * 120.00347 * 175.01024 * 19 18 17 21 21 C 1.50705 * 119.99976 * 355.00908 * 19 18 17 22 22 C 1.52997 * 109.47051 * 180.02562 * 21 19 18 23 23 S 1.81401 * 109.47130 * 180.02562 * 22 21 19 24 24 C 1.81400 * 101.92459 * 179.97438 * 23 22 21 25 25 O 1.42103 * 108.57862 * 65.50910 * 23 22 21 26 26 O 1.42098 * 108.57753 * 294.48946 * 23 22 21 27 27 H 1.09003 * 109.47320 * 174.88663 * 1 2 3 28 28 H 1.08999 * 109.47328 * 294.89156 * 1 2 3 29 29 H 1.09006 * 109.47250 * 54.88902 * 1 2 3 30 30 H 0.96996 * 120.00531 * 179.97438 * 6 5 3 31 31 H 1.08996 * 109.47237 * 324.90452 * 11 2 1 32 32 H 1.09000 * 109.47063 * 204.90331 * 11 2 1 33 33 H 1.08996 * 109.63228 * 54.54941 * 14 12 11 34 34 H 1.09003 * 109.45183 * 294.43199 * 14 12 11 35 35 H 1.08995 * 109.45950 * 178.49153 * 15 14 12 36 36 H 1.09000 * 109.44776 * 58.52362 * 15 14 12 37 37 H 1.09006 * 109.49718 * 301.41842 * 16 15 14 38 38 H 1.08996 * 109.50196 * 181.31926 * 16 15 14 39 39 H 1.08992 * 109.58972 * 185.57549 * 17 16 15 40 40 H 1.08998 * 109.70023 * 65.22282 * 17 16 15 41 41 H 1.08997 * 109.46935 * 60.00166 * 21 19 18 42 42 H 1.08998 * 109.47316 * 300.00401 * 21 19 18 43 43 H 1.08997 * 109.47239 * 60.00201 * 22 21 19 44 44 H 1.08997 * 109.47131 * 299.99506 * 22 21 19 45 45 H 1.08998 * 109.46596 * 300.00035 * 24 23 22 46 46 H 1.08994 * 109.47416 * 179.97438 * 24 23 22 47 47 H 1.08996 * 109.46895 * 60.00056 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2151 1.1944 -0.1763 5 6 1.4743 2.3773 0.2266 6 7 0.2389 2.3575 0.6804 7 14 2.3185 4.0088 -0.1124 8 1 3.6945 3.7595 -0.6125 9 1 1.5485 4.7615 -1.1351 10 1 2.3840 4.8021 1.1411 11 6 2.1975 -1.2687 -0.0006 12 6 2.3415 -1.7738 -1.4377 13 1 1.3549 -1.8992 -1.8837 14 6 3.1585 -0.7660 -2.2604 15 6 3.4127 -1.3420 -3.6553 16 6 4.2231 -2.6346 -3.5353 17 6 3.4231 -3.6610 -2.7268 18 7 3.0498 -3.0610 -1.4386 19 6 3.3464 -3.6824 -0.2801 20 8 3.1148 -3.1362 0.7777 21 6 3.9660 -5.0561 -0.2989 22 6 4.1994 -5.5300 1.1369 23 16 4.9459 -7.1832 1.1143 24 6 5.1297 -7.5357 2.8842 25 8 6.2401 -7.0876 0.5354 26 8 4.0061 -8.0968 0.5653 27 1 -0.3634 -1.0236 -0.0916 28 1 -0.3634 0.4325 0.9322 29 1 -0.3634 0.5911 -0.8407 30 1 -0.2329 3.1899 0.8392 31 1 1.6510 -2.0041 0.5899 32 1 3.1864 -1.1175 0.4322 33 1 4.1111 -0.5763 -1.7659 34 1 2.6019 0.1671 -2.3480 35 1 3.9693 -0.6185 -4.2510 36 1 2.4596 -1.5545 -4.1394 37 1 5.1658 -2.4274 -3.0288 38 1 4.4239 -3.0319 -4.5303 39 1 4.0343 -4.5467 -2.5540 40 1 2.5230 -3.9395 -3.2747 41 1 4.9179 -5.0180 -0.8286 42 1 3.2957 -5.7501 -0.8059 43 1 3.2473 -5.5682 1.6662 44 1 4.8696 -4.8361 1.6442 45 1 5.7723 -6.7824 3.3398 46 1 5.5763 -8.5215 3.0138 47 1 4.1504 -7.5152 3.3623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158135410.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:38 Heat of formation + Delta-G solvation = -63.054167 kcal Electronic energy + Delta-G solvation = -28016.454382 eV Core-core repulsion = 24135.447755 eV Total energy + Delta-G solvation = -3881.006627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.36315 -37.32725 -37.27381 -36.33672 -35.52801 -33.57678 -32.58516 -31.77510 -30.05373 -29.93464 -26.73932 -25.88221 -25.14469 -24.16209 -22.30787 -20.63651 -20.39250 -19.18253 -18.83244 -17.32936 -16.68542 -16.62755 -16.39140 -15.90224 -15.72235 -15.53147 -14.69384 -14.40073 -14.19381 -13.98790 -13.76808 -13.56262 -13.50778 -13.19562 -13.16526 -12.85148 -12.68299 -12.44049 -12.38059 -12.28764 -12.21644 -11.76043 -11.64201 -11.39722 -11.12382 -11.01063 -10.90667 -10.77672 -10.68060 -10.57352 -10.40663 -10.25513 -10.04897 -9.84193 -9.68947 -8.92569 -8.49187 -8.23721 -6.73636 -5.53371 -3.00366 -0.35538 2.39590 2.75128 3.03818 3.36507 3.42407 3.49053 3.50786 3.70150 4.19304 4.42223 4.42708 4.53155 4.59505 4.66744 4.79067 4.95718 5.08248 5.12903 5.26213 5.28876 5.38759 5.48628 5.52423 5.53057 5.57991 5.73812 5.90706 5.94091 6.00137 6.13331 6.16637 6.43448 6.48980 6.70875 6.84114 6.92021 7.00576 7.29525 7.55492 7.63598 7.84791 8.00972 8.35911 8.51863 9.36037 10.01825 10.45742 11.43497 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016608 B = 0.003073 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.531573 B = 9108.865804 C = 9953.214124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.608 5.608 3 C -0.237 4.237 4 H 0.072 0.928 5 C -0.009 4.009 6 N -0.914 5.914 7 Si 0.901 3.099 8 H -0.280 1.280 9 H -0.291 1.291 10 H -0.292 1.292 11 C 0.166 3.834 12 C 0.122 3.878 13 H 0.063 0.937 14 C -0.120 4.120 15 C -0.122 4.122 16 C -0.134 4.134 17 C 0.103 3.897 18 N -0.604 5.604 19 C 0.515 3.485 20 O -0.519 6.519 21 C -0.135 4.135 22 C -0.593 4.593 23 S 2.421 3.579 24 C -0.655 4.655 25 O -0.941 6.941 26 O -0.941 6.941 27 H -0.007 1.007 28 H 0.064 0.936 29 H 0.017 0.983 30 H 0.248 0.752 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.130 0.870 46 H 0.128 0.872 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.765 -19.613 -3.082 21.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.332 5.332 3 C -0.367 4.367 4 H 0.090 0.910 5 C -0.205 4.205 6 N -0.562 5.562 7 Si 0.732 3.268 8 H -0.206 1.206 9 H -0.218 1.218 10 H -0.220 1.220 11 C 0.038 3.962 12 C 0.017 3.983 13 H 0.081 0.919 14 C -0.158 4.158 15 C -0.159 4.159 16 C -0.172 4.172 17 C -0.020 4.020 18 N -0.339 5.339 19 C 0.301 3.699 20 O -0.395 6.395 21 C -0.176 4.176 22 C -0.722 4.722 23 S 2.603 3.397 24 C -0.804 4.804 25 O -0.938 6.938 26 O -0.938 6.938 27 H 0.012 0.988 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.149 0.851 46 H 0.147 0.853 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.757 -19.705 -3.170 21.795 hybrid contribution 0.188 1.462 0.315 1.507 sum 8.945 -18.244 -2.855 20.518 Atomic orbital electron populations 1.21062 0.82481 0.93220 1.01939 1.44298 1.02177 1.01132 1.85560 1.19319 0.92461 0.84025 1.40894 0.91025 1.24847 0.96613 0.97762 1.01251 1.70119 1.11445 1.24794 1.49832 0.86209 0.78543 0.84537 0.77501 1.20557 1.21842 1.21973 1.21378 0.97434 0.87311 0.90033 1.22642 0.93296 0.80053 1.02286 0.91882 1.21965 1.00661 0.99704 0.93455 1.21576 0.99679 0.96284 0.98401 1.21909 0.99197 0.96368 0.99702 1.21767 0.99366 0.96039 0.84857 1.48363 1.57699 1.22701 1.05101 1.20136 0.79032 0.86618 0.84116 1.90812 1.52425 1.65573 1.30695 1.21437 1.03916 0.97587 0.94668 1.30127 1.15123 1.22212 1.04726 1.07803 0.75797 0.77816 0.78263 1.30235 1.11964 1.12185 1.26034 1.93603 1.38989 1.86477 1.74751 1.93602 1.63848 1.60575 1.75799 0.98812 0.91801 0.96407 0.94150 0.92251 0.92349 0.92347 0.88834 0.92125 0.92218 0.91579 0.91178 0.90235 0.91322 0.87602 0.87571 0.84056 0.84066 0.85147 0.85326 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.04 9.04 59.85 0.54 4.58 16 2 N -0.61 -15.60 2.68 -181.12 -0.49 -16.09 16 3 C -0.24 -6.54 8.23 -15.06 -0.12 -6.66 16 4 H 0.07 1.94 7.78 -52.48 -0.41 1.53 16 5 C -0.01 -0.24 5.32 -17.43 -0.09 -0.33 16 6 N -0.91 -27.03 9.96 55.49 0.55 -26.48 16 7 Si 0.90 22.19 29.57 -169.99 -5.03 17.16 16 8 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 9 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 C 0.17 3.65 3.51 -4.04 -0.01 3.63 16 12 C 0.12 2.17 3.20 -67.37 -0.22 1.96 16 13 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 14 C -0.12 -2.06 4.69 -26.39 -0.12 -2.18 16 15 C -0.12 -1.59 5.88 -26.69 -0.16 -1.74 16 16 C -0.13 -1.41 6.08 -26.61 -0.16 -1.57 16 17 C 0.10 1.08 6.33 -3.71 -0.02 1.05 16 18 N -0.60 -8.65 2.97 -164.96 -0.49 -9.14 16 19 C 0.52 7.41 7.61 -10.99 -0.08 7.33 16 20 O -0.52 -9.37 11.39 5.56 0.06 -9.31 16 21 C -0.13 -1.32 4.11 -27.88 -0.11 -1.43 16 22 C -0.59 -4.63 5.09 37.16 0.19 -4.44 16 23 S 2.42 17.03 5.36 -107.50 -0.58 16.46 16 24 C -0.65 -2.66 10.62 101.05 1.07 -1.59 16 25 O -0.94 -9.91 18.10 -57.83 -1.05 -10.95 16 26 O -0.94 -9.89 18.10 -57.83 -1.05 -10.94 16 27 H -0.01 -0.16 7.90 -51.93 -0.41 -0.57 16 28 H 0.06 1.81 6.43 -51.93 -0.33 1.48 16 29 H 0.02 0.47 7.81 -51.93 -0.41 0.07 16 30 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.06 1.36 6.27 -51.93 -0.33 1.04 16 32 H 0.06 1.38 6.99 -51.93 -0.36 1.02 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.90 6.99 -51.93 -0.36 1.54 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.63 5.96 -51.93 -0.31 0.32 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.11 0.85 7.48 -51.93 -0.39 0.46 16 42 H 0.11 0.85 8.11 -51.93 -0.42 0.43 16 43 H 0.14 1.00 8.10 -51.93 -0.42 0.58 16 44 H 0.14 1.01 8.10 -51.92 -0.42 0.59 16 45 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.13 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -37.49 376.80 -9.62 -47.11 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -7.93 Total: -2.10 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 0.69 Total: -1.40 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.42 Total: -51.70 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -2.03 Total: -31.20 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Atomic # 16 Polarization: 17.03 SS G_CDS: -0.58 Total: 16.46 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.49 -9.62 -47.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158135410.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.947 kcal (2) G-P(sol) polarization free energy of solvation -37.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds