Wall clock time and date at job start Tue Mar 31 2020 17:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.47062 * 125.41262 * 2 1 4 4 C 1.54099 * 103.86092 * 179.97438 * 3 2 1 5 5 H 1.09007 * 110.54949 * 241.25596 * 4 3 2 6 6 C 1.50702 * 110.54900 * 118.59464 * 4 3 2 7 7 O 1.21283 * 120.00262 * 259.99959 * 6 4 3 8 8 N 1.34777 * 119.99928 * 79.71864 * 6 4 3 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 4 10 10 C 1.50694 * 109.47550 * 180.02562 * 9 8 6 11 11 C 1.38232 * 120.00152 * 269.73162 * 10 9 8 12 12 C 1.38240 * 120.00064 * 179.74392 * 11 10 9 13 13 C 1.38238 * 119.99740 * 0.54609 * 12 11 10 14 14 C 1.50704 * 119.99828 * 179.72864 * 13 12 11 15 15 N 1.46505 * 109.46785 * 269.97773 * 14 13 12 16 16 C 1.36931 * 119.99682 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00272 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99816 * 180.02562 * 16 15 14 19 19 N 1.31614 * 120.00234 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 119.99907 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46996 * 89.99909 * 20 18 16 22 22 H 1.48497 * 109.46998 * 209.99978 * 20 18 16 23 23 H 1.48500 * 109.46908 * 329.99692 * 20 18 16 24 24 C 1.38236 * 120.00080 * 359.70828 * 13 12 11 25 25 C 1.38234 * 119.99899 * 0.02562 * 24 13 12 26 26 N 1.47050 * 103.86642 * 359.97438 * 4 3 2 27 27 C 1.33950 * 125.40859 * 179.97438 * 2 1 3 28 28 O 1.21584 * 123.04406 * 359.97438 * 27 2 1 29 29 H 1.09000 * 109.46901 * 90.00024 * 1 2 3 30 30 H 1.08995 * 109.47535 * 209.99919 * 1 2 3 31 31 H 1.09001 * 109.47226 * 330.00204 * 1 2 3 32 32 H 1.08993 * 110.54720 * 61.40586 * 3 2 1 33 33 H 1.08998 * 110.54416 * 298.59469 * 3 2 1 34 34 H 0.97000 * 120.00317 * 0.28382 * 8 6 4 35 35 H 1.08998 * 109.47134 * 300.00670 * 9 8 6 36 36 H 1.09002 * 109.46857 * 59.99862 * 9 8 6 37 37 H 1.07997 * 119.99904 * 359.97438 * 11 10 9 38 38 H 1.08000 * 120.00236 * 180.27294 * 12 11 10 39 39 H 1.08998 * 109.47543 * 29.97816 * 14 13 12 40 40 H 1.08994 * 109.46776 * 149.97891 * 14 13 12 41 41 H 0.97000 * 119.99789 * 0.02562 * 15 14 13 42 42 H 0.97005 * 120.00265 * 180.02562 * 19 18 16 43 43 H 1.08002 * 119.99927 * 179.97438 * 24 13 12 44 44 H 1.07996 * 119.99664 * 179.97438 * 25 24 13 45 45 H 0.97005 * 125.41295 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3171 1.1986 0.0000 4 6 3.7504 0.6325 0.0007 5 1 4.2862 0.9487 0.8957 6 6 4.4909 1.0660 -1.2382 7 8 4.6030 0.3044 -2.1754 8 7 5.0237 2.3021 -1.3069 9 6 5.7384 2.7257 -2.5135 10 6 6.2324 4.1381 -2.3350 11 6 5.4375 5.2020 -2.7186 12 6 5.8885 6.4979 -2.5499 13 6 7.1391 6.7294 -2.0082 14 6 7.6333 8.1420 -1.8301 15 7 8.3481 8.5650 -3.0369 16 6 8.8905 9.8204 -3.1066 17 1 8.7910 10.4988 -2.2722 18 6 9.5673 10.2215 -4.2503 19 7 9.6881 9.3950 -5.2674 20 14 10.3066 11.9344 -4.3457 21 1 11.6999 11.9014 -3.8330 22 1 10.3094 12.3943 -5.7576 23 1 9.4982 12.8690 -3.5222 24 6 7.9361 5.6654 -1.6296 25 6 7.4829 4.3697 -1.7931 26 7 3.5537 -0.8248 0.0016 27 6 2.2410 -1.0917 0.0005 28 8 1.7945 -2.2226 0.0014 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 2.1407 1.7934 0.8961 33 1 2.1406 1.7934 -0.8962 34 1 4.9341 2.9112 -0.5573 35 1 6.5869 2.0633 -2.6846 36 1 5.0646 2.6814 -3.3692 37 1 4.4626 5.0210 -3.1465 38 1 5.2657 7.3292 -2.8455 39 1 6.7851 8.8048 -1.6590 40 1 8.3071 8.1859 -0.9745 41 1 8.4371 7.9559 -3.7865 42 1 10.1614 9.6752 -6.0665 43 1 8.9133 5.8463 -1.2067 44 1 8.1058 3.5385 -1.4976 45 1 4.2620 -1.4876 0.0018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318998529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:15 Heat of formation + Delta-G solvation = -5.046324 kcal Electronic energy + Delta-G solvation = -26800.085084 eV Core-core repulsion = 22818.442666 eV Total energy + Delta-G solvation = -3981.642418 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.78842 -39.91109 -39.10148 -36.64090 -35.70553 -34.55312 -34.43476 -32.26524 -30.81467 -30.63234 -29.67834 -27.88152 -26.86391 -24.79278 -23.86848 -22.58770 -22.42611 -21.05545 -20.99324 -20.54541 -18.40917 -18.08759 -17.34869 -16.95097 -16.36981 -16.09523 -15.82644 -15.42102 -15.09374 -14.87929 -14.67722 -14.58777 -14.51316 -14.11643 -13.89988 -13.44255 -13.34882 -13.27685 -13.23369 -12.91109 -12.81137 -12.46844 -12.41936 -12.12324 -11.94259 -11.14647 -10.92710 -10.80878 -10.76058 -10.66756 -10.56199 -10.11712 -9.83676 -9.70490 -9.49161 -9.09817 -8.96120 -8.78567 -8.53125 -7.00670 -5.82135 -3.12428 1.27486 1.54543 1.92906 2.20042 2.54035 2.89571 3.39629 3.41914 3.44669 3.46615 3.70612 3.87582 4.13840 4.23532 4.49309 4.55534 4.57374 4.75444 4.84493 4.87407 5.07775 5.08981 5.22016 5.25900 5.29140 5.40671 5.47453 5.50894 5.65012 5.75448 5.95434 6.06790 6.07667 6.12317 6.16507 6.40419 6.50920 6.53421 6.58951 6.63407 6.96437 7.01701 7.05748 7.12740 7.63336 7.71584 8.16508 8.35343 9.47092 10.02478 10.38011 11.40180 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.035913 B = 0.001689 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.471432 B =16576.404041 C =16850.875414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.637 5.637 3 C 0.106 3.894 4 C 0.105 3.895 5 H 0.119 0.881 6 C 0.499 3.501 7 O -0.521 6.521 8 N -0.718 5.718 9 C 0.166 3.834 10 C -0.127 4.127 11 C -0.103 4.103 12 C -0.106 4.106 13 C -0.062 4.062 14 C 0.184 3.816 15 N -0.727 5.727 16 C -0.245 4.245 17 H 0.072 0.928 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.106 4.106 25 C -0.103 4.103 26 N -0.715 5.715 27 C 0.704 3.296 28 O -0.581 6.581 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.404 0.596 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.029 0.971 40 H 0.028 0.972 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.124 0.876 44 H 0.119 0.881 45 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.590 -16.056 14.261 26.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.377 5.377 3 C -0.019 4.019 4 C -0.006 4.006 5 H 0.136 0.864 6 C 0.282 3.718 7 O -0.396 6.396 8 N -0.370 5.370 9 C 0.043 3.957 10 C -0.127 4.127 11 C -0.121 4.121 12 C -0.125 4.125 13 C -0.063 4.063 14 C 0.057 3.943 15 N -0.371 5.371 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.125 4.125 25 C -0.121 4.121 26 N -0.377 5.377 27 C 0.405 3.595 28 O -0.458 6.458 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.239 0.761 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.142 0.858 44 H 0.137 0.863 45 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -15.889 -17.021 13.595 26.963 hybrid contribution 0.985 1.062 -0.193 1.461 sum -14.904 -15.959 13.402 25.621 Atomic orbital electron populations 1.21418 0.75165 1.03328 1.02156 1.47009 1.06517 1.05485 1.78692 1.22295 0.86150 0.89168 1.04243 1.21836 0.97258 0.83587 0.97941 0.86385 1.20767 0.79695 0.82191 0.89116 1.90781 1.58166 1.52712 1.37962 1.46138 1.56298 1.14824 1.19757 1.20198 0.96490 0.91952 0.87017 1.19634 0.95769 0.93784 1.03559 1.20985 0.99299 0.92259 0.99584 1.21135 0.96176 0.96627 0.98535 1.20414 0.93578 0.96764 0.95522 1.19716 0.94957 0.88063 0.91603 1.42331 1.65076 1.15267 1.14434 1.19233 1.27781 0.90576 0.99955 0.91039 1.24769 1.01302 0.98323 0.96412 1.69670 1.47110 1.35321 1.05777 0.86167 0.79131 0.83892 0.76832 1.21649 1.21717 1.20706 1.21136 0.99595 0.91882 0.99858 1.20990 0.95190 0.96922 0.99023 1.44831 1.07029 1.06054 1.79746 1.15809 0.81647 0.84673 0.77419 1.90974 1.75776 1.20894 1.58163 0.92508 0.90240 0.90681 0.88526 0.89466 0.76105 0.90534 0.90557 0.86306 0.85766 0.95372 0.95378 0.78051 0.93414 0.85769 0.86304 0.72280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.66 11.03 59.84 0.66 1.32 16 2 N -0.64 -4.92 3.36 -186.74 -0.63 -5.55 16 3 C 0.11 0.48 7.32 -3.16 -0.02 0.45 16 4 C 0.10 0.57 4.17 -68.21 -0.28 0.28 16 5 H 0.12 0.25 8.14 -51.92 -0.42 -0.17 16 6 C 0.50 4.06 6.96 -10.98 -0.08 3.99 16 7 O -0.52 -6.77 16.56 5.55 0.09 -6.68 16 8 N -0.72 -4.72 5.55 -61.47 -0.34 -5.07 16 9 C 0.17 1.49 5.80 -5.20 -0.03 1.46 16 10 C -0.13 -1.32 5.25 -104.63 -0.55 -1.87 16 11 C -0.10 -1.16 9.70 -39.58 -0.38 -1.54 16 12 C -0.11 -1.47 9.70 -39.58 -0.38 -1.86 16 13 C -0.06 -0.98 5.25 -104.62 -0.55 -1.53 16 14 C 0.18 3.52 6.38 -5.19 -0.03 3.49 16 15 N -0.73 -17.98 5.59 -61.08 -0.34 -18.32 16 16 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -27.84 13.06 55.49 0.72 -27.11 16 20 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C -0.11 -1.48 9.70 -39.58 -0.38 -1.87 16 25 C -0.10 -1.17 9.70 -39.58 -0.38 -1.55 16 26 N -0.72 -6.01 5.60 -59.33 -0.33 -6.34 16 27 C 0.70 7.79 8.60 -88.39 -0.76 7.03 16 28 O -0.58 -8.83 17.53 5.29 0.09 -8.74 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.50 7.91 -51.93 -0.41 0.09 16 31 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.10 0.15 8.14 -51.93 -0.42 -0.28 16 33 H 0.09 0.38 7.73 -51.93 -0.40 -0.02 16 34 H 0.40 1.68 8.46 -40.82 -0.35 1.33 16 35 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 36 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 39 H 0.03 0.54 8.09 -51.93 -0.42 0.12 16 40 H 0.03 0.54 8.08 -51.93 -0.42 0.12 16 41 H 0.39 10.22 7.66 -40.82 -0.31 9.91 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 44 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 45 H 0.43 3.36 8.96 -40.82 -0.37 3.00 16 LS Contribution 387.19 15.07 5.83 5.83 Total: -1.00 -37.29 387.19 -9.79 -47.08 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.44 Total: 7.43 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -3.43 Total: 0.53 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -0.92 Total: -62.39 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.18 Total: -15.42 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.29 -9.79 -47.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318998529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.038 kcal (2) G-P(sol) polarization free energy of solvation -37.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds