Wall clock time and date at job start Tue Mar 31 2020 17:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.47062 * 125.41262 * 2 1 4 4 C 1.54099 * 103.86092 * 179.97438 * 3 2 1 5 5 H 1.09007 * 110.54949 * 241.25596 * 4 3 2 6 6 C 1.50702 * 110.54900 * 118.59464 * 4 3 2 7 7 O 1.21283 * 120.00262 * 259.99959 * 6 4 3 8 8 N 1.34777 * 119.99928 * 79.71864 * 6 4 3 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 4 10 10 C 1.50694 * 109.47550 * 180.02562 * 9 8 6 11 11 C 1.38232 * 120.00152 * 269.73162 * 10 9 8 12 12 C 1.38240 * 120.00064 * 179.74392 * 11 10 9 13 13 C 1.38238 * 119.99740 * 0.54609 * 12 11 10 14 14 C 1.50704 * 119.99828 * 179.72864 * 13 12 11 15 15 N 1.46505 * 109.46785 * 269.97773 * 14 13 12 16 16 C 1.36931 * 119.99682 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00272 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99816 * 180.02562 * 16 15 14 19 19 N 1.31614 * 120.00234 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 119.99907 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46996 * 89.99909 * 20 18 16 22 22 H 1.48497 * 109.46998 * 209.99978 * 20 18 16 23 23 H 1.48500 * 109.46908 * 329.99692 * 20 18 16 24 24 C 1.38236 * 120.00080 * 359.70828 * 13 12 11 25 25 C 1.38234 * 119.99899 * 0.02562 * 24 13 12 26 26 N 1.47050 * 103.86642 * 359.97438 * 4 3 2 27 27 C 1.33950 * 125.40859 * 179.97438 * 2 1 3 28 28 O 1.21584 * 123.04406 * 359.97438 * 27 2 1 29 29 H 1.09000 * 109.46901 * 90.00024 * 1 2 3 30 30 H 1.08995 * 109.47535 * 209.99919 * 1 2 3 31 31 H 1.09001 * 109.47226 * 330.00204 * 1 2 3 32 32 H 1.08993 * 110.54720 * 61.40586 * 3 2 1 33 33 H 1.08998 * 110.54416 * 298.59469 * 3 2 1 34 34 H 0.97000 * 120.00317 * 0.28382 * 8 6 4 35 35 H 1.08998 * 109.47134 * 300.00670 * 9 8 6 36 36 H 1.09002 * 109.46857 * 59.99862 * 9 8 6 37 37 H 1.07997 * 119.99904 * 359.97438 * 11 10 9 38 38 H 1.08000 * 120.00236 * 180.27294 * 12 11 10 39 39 H 1.08998 * 109.47543 * 29.97816 * 14 13 12 40 40 H 1.08994 * 109.46776 * 149.97891 * 14 13 12 41 41 H 0.97000 * 119.99789 * 0.02562 * 15 14 13 42 42 H 0.97005 * 120.00265 * 180.02562 * 19 18 16 43 43 H 1.08002 * 119.99927 * 179.97438 * 24 13 12 44 44 H 1.07996 * 119.99664 * 179.97438 * 25 24 13 45 45 H 0.97005 * 125.41295 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3171 1.1986 0.0000 4 6 3.7504 0.6325 0.0007 5 1 4.2862 0.9487 0.8957 6 6 4.4909 1.0660 -1.2382 7 8 4.6030 0.3044 -2.1754 8 7 5.0237 2.3021 -1.3069 9 6 5.7384 2.7257 -2.5135 10 6 6.2324 4.1381 -2.3350 11 6 5.4375 5.2020 -2.7186 12 6 5.8885 6.4979 -2.5499 13 6 7.1391 6.7294 -2.0082 14 6 7.6333 8.1420 -1.8301 15 7 8.3481 8.5650 -3.0369 16 6 8.8905 9.8204 -3.1066 17 1 8.7910 10.4988 -2.2722 18 6 9.5673 10.2215 -4.2503 19 7 9.6881 9.3950 -5.2674 20 14 10.3066 11.9344 -4.3457 21 1 11.6999 11.9014 -3.8330 22 1 10.3094 12.3943 -5.7576 23 1 9.4982 12.8690 -3.5222 24 6 7.9361 5.6654 -1.6296 25 6 7.4829 4.3697 -1.7931 26 7 3.5537 -0.8248 0.0016 27 6 2.2410 -1.0917 0.0005 28 8 1.7945 -2.2226 0.0014 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 2.1407 1.7934 0.8961 33 1 2.1406 1.7934 -0.8962 34 1 4.9341 2.9112 -0.5573 35 1 6.5869 2.0633 -2.6846 36 1 5.0646 2.6814 -3.3692 37 1 4.4626 5.0210 -3.1465 38 1 5.2657 7.3292 -2.8455 39 1 6.7851 8.8048 -1.6590 40 1 8.3071 8.1859 -0.9745 41 1 8.4371 7.9559 -3.7865 42 1 10.1614 9.6752 -6.0665 43 1 8.9133 5.8463 -1.2067 44 1 8.1058 3.5385 -1.4976 45 1 4.2620 -1.4876 0.0018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318998529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:13 Heat of formation + Delta-G solvation = -34.044489 kcal Electronic energy + Delta-G solvation = -26801.342539 eV Core-core repulsion = 22818.442666 eV Total energy + Delta-G solvation = -3982.899873 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.40786 -40.74573 -40.01954 -37.44897 -36.91633 -35.80252 -35.08126 -33.75676 -31.99477 -31.80782 -30.48477 -28.62228 -27.86230 -26.05935 -24.75404 -23.89846 -23.58424 -21.70255 -21.67361 -21.57460 -19.31966 -19.06755 -18.66473 -17.62505 -17.07431 -17.01067 -16.69742 -16.63717 -16.26240 -15.92813 -15.78709 -15.26758 -15.21725 -15.18756 -14.97861 -14.70545 -14.47383 -14.29787 -14.13000 -13.67636 -13.59665 -13.32503 -13.21211 -13.06634 -12.97241 -12.91117 -12.76160 -12.18539 -11.94809 -11.86892 -11.71653 -11.56800 -11.38956 -10.97894 -10.45887 -10.17014 -9.77522 -9.67487 -9.51988 -9.02544 -7.95594 -5.25636 0.27476 0.55009 1.34119 1.48311 1.49920 1.58478 1.61140 1.86359 2.19233 2.55659 2.85574 2.97228 3.28288 3.37891 3.60247 3.68852 3.91527 3.94078 4.08113 4.14039 4.18506 4.26149 4.32255 4.50153 4.54599 4.60625 4.70173 4.73251 4.74983 4.88039 4.92770 4.93766 4.96416 5.11299 5.24093 5.31095 5.48215 5.50381 5.61632 5.63517 5.85851 6.01238 6.10492 6.25259 6.33734 6.51002 7.14417 7.32087 7.43278 8.05791 8.30098 9.27562 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.035913 B = 0.001689 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.471432 B =16576.404041 C =16850.875414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.637 5.637 3 C 0.104 3.896 4 C 0.109 3.891 5 H 0.164 0.836 6 C 0.503 3.497 7 O -0.575 6.575 8 N -0.700 5.700 9 C 0.172 3.828 10 C -0.108 4.108 11 C -0.095 4.095 12 C -0.116 4.116 13 C -0.087 4.087 14 C 0.184 3.816 15 N -0.740 5.740 16 C -0.248 4.248 17 H 0.079 0.921 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.976 3.024 21 H -0.287 1.287 22 H -0.296 1.296 23 H -0.267 1.267 24 C -0.117 4.117 25 C -0.097 4.097 26 N -0.716 5.716 27 C 0.689 3.311 28 O -0.637 6.637 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.140 0.860 33 H 0.092 0.908 34 H 0.421 0.579 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.144 0.856 38 H 0.121 0.879 39 H 0.031 0.969 40 H 0.030 0.970 41 H 0.373 0.627 42 H 0.251 0.749 43 H 0.119 0.881 44 H 0.142 0.858 45 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.412 -15.346 15.957 27.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.376 5.376 3 C -0.019 4.019 4 C -0.001 4.001 5 H 0.181 0.819 6 C 0.288 3.712 7 O -0.453 6.453 8 N -0.353 5.353 9 C 0.048 3.952 10 C -0.108 4.108 11 C -0.114 4.114 12 C -0.134 4.134 13 C -0.088 4.088 14 C 0.058 3.942 15 N -0.382 5.382 16 C -0.379 4.379 17 H 0.097 0.903 18 C -0.267 4.267 19 N -0.620 5.620 20 Si 0.804 3.196 21 H -0.214 1.214 22 H -0.223 1.223 23 H -0.192 1.192 24 C -0.136 4.136 25 C -0.115 4.115 26 N -0.376 5.376 27 C 0.389 3.611 28 O -0.518 6.518 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.130 0.870 32 H 0.158 0.842 33 H 0.110 0.890 34 H 0.258 0.742 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.162 0.838 38 H 0.139 0.861 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.205 0.795 42 H 0.060 0.940 43 H 0.137 0.863 44 H 0.160 0.840 45 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -16.725 -16.228 15.372 27.917 hybrid contribution 1.188 0.791 -0.674 1.578 sum -15.537 -15.437 14.698 26.376 Atomic orbital electron populations 1.21593 0.74203 1.04399 1.02371 1.47210 1.07316 1.05643 1.77436 1.22647 0.84526 0.88114 1.06626 1.22146 0.98233 0.81702 0.97977 0.81914 1.21232 0.79024 0.81753 0.89229 1.90775 1.60269 1.54221 1.40058 1.45909 1.55230 1.14702 1.19482 1.20033 0.96551 0.90674 0.87922 1.19742 0.95062 0.94325 1.01708 1.21198 1.00327 0.91164 0.98665 1.21175 0.95603 0.97875 0.98796 1.20162 0.95015 0.95154 0.98436 1.19786 0.94353 0.90603 0.89416 1.42548 1.65503 1.14377 1.15793 1.19674 1.26717 0.91672 0.99879 0.90315 1.25604 1.02597 1.02184 0.96352 1.69831 1.48607 1.37233 1.06300 0.85109 0.78323 0.79671 0.76448 1.21371 1.22293 1.19219 1.21167 0.99367 0.92641 1.00377 1.21192 0.95702 0.96387 0.98207 1.44887 1.06208 1.07675 1.78817 1.16213 0.82646 0.84743 0.77483 1.90918 1.76907 1.23272 1.60753 0.92759 0.91757 0.87018 0.84186 0.88978 0.74165 0.90915 0.90866 0.83816 0.86143 0.95134 0.95217 0.79529 0.94005 0.86273 0.84004 0.72370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.08 11.03 127.77 1.41 2.49 16 2 N -0.64 -8.61 3.36 -863.45 -2.90 -11.50 16 3 C 0.10 0.52 7.32 86.64 0.63 1.15 16 4 C 0.11 0.81 4.17 44.51 0.19 1.00 16 5 H 0.16 -0.18 8.14 -2.38 -0.02 -0.20 16 6 C 0.50 6.80 6.96 87.66 0.61 7.41 16 7 O -0.57 -14.25 16.56 -3.04 -0.05 -14.30 16 8 N -0.70 -6.67 5.55 -466.79 -2.59 -9.26 16 9 C 0.17 2.57 5.80 85.63 0.50 3.06 16 10 C -0.11 -1.92 5.25 -19.87 -0.10 -2.02 16 11 C -0.10 -1.89 9.70 22.27 0.22 -1.67 16 12 C -0.12 -3.07 9.70 22.27 0.22 -2.86 16 13 C -0.09 -2.69 5.25 -19.86 -0.10 -2.80 16 14 C 0.18 7.09 6.38 85.63 0.55 7.64 16 15 N -0.74 -37.09 5.59 -347.17 -1.94 -39.03 16 16 C -0.25 -13.63 9.99 84.03 0.84 -12.79 16 17 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 18 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 19 N -0.97 -59.03 13.06 21.65 0.28 -58.75 16 20 Si 0.98 45.35 29.55 68.60 2.03 47.38 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 24 C -0.12 -3.14 9.70 22.27 0.22 -2.93 16 25 C -0.10 -1.95 9.70 22.27 0.22 -1.74 16 26 N -0.72 -11.13 5.60 -460.34 -2.58 -13.71 16 27 C 0.69 14.94 8.60 179.57 1.54 16.49 16 28 O -0.64 -20.13 17.53 -3.98 -0.07 -20.19 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.81 7.91 -2.39 -0.02 0.79 16 31 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.14 -0.41 8.14 -2.39 -0.02 -0.43 16 33 H 0.09 0.43 7.73 -2.39 -0.02 0.41 16 34 H 0.42 1.49 8.46 -92.71 -0.78 0.71 16 35 H 0.07 1.22 8.08 -2.39 -0.02 1.20 16 36 H 0.07 1.22 8.08 -2.39 -0.02 1.20 16 37 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 38 H 0.12 3.21 8.06 -2.91 -0.02 3.19 16 39 H 0.03 1.16 8.09 -2.39 -0.02 1.14 16 40 H 0.03 1.13 8.08 -2.39 -0.02 1.11 16 41 H 0.37 20.25 7.66 -92.71 -0.71 19.54 16 42 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 43 H 0.12 3.24 8.06 -2.91 -0.02 3.22 16 44 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 45 H 0.43 6.53 8.96 -92.70 -0.83 5.70 16 Total: -1.00 -84.80 387.19 -1.72 -86.52 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: -1.28 Total: 24.21 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 7.39 Total: 8.64 kcal Atomic # 7 Polarization: -122.52 SS G_CDS: -9.73 Total: -132.25 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -0.12 Total: -34.49 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -84.80 -1.72 -86.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318998529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.471 kcal (2) G-P(sol) polarization free energy of solvation -84.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds