Wall clock time and date at job start Tue Mar 31 2020 16:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46845 * 2 1 4 4 C 1.52997 * 109.47150 * 240.00126 * 2 1 3 5 5 S 1.81398 * 109.47182 * 119.99915 * 2 1 3 6 6 O 1.42099 * 108.57809 * 305.51682 * 5 2 1 7 7 O 1.42090 * 108.58073 * 174.48802 * 5 2 1 8 8 C 1.81398 * 101.92156 * 60.00039 * 5 2 1 9 9 C 1.50697 * 109.47448 * 180.02562 * 8 5 2 10 10 O 1.21274 * 119.99704 * 359.97438 * 9 8 5 11 11 N 1.34770 * 120.00172 * 180.02562 * 9 8 5 12 12 C 1.46498 * 120.00031 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.47292 * 179.97438 * 12 11 9 14 14 H 1.09002 * 112.84839 * 43.80323 * 13 12 11 15 15 C 1.53784 * 113.61409 * 174.99700 * 13 12 11 16 16 C 1.53788 * 87.07794 * 139.98290 * 15 13 12 17 17 H 1.09000 * 113.61049 * 89.19841 * 16 15 13 18 18 N 1.46493 * 113.61212 * 220.01875 * 16 15 13 19 19 C 1.36945 * 119.99892 * 203.46946 * 18 16 15 20 20 H 1.08000 * 119.99422 * 359.72792 * 19 18 16 21 21 C 1.38811 * 120.00031 * 179.72716 * 19 18 16 22 22 N 1.31616 * 119.99707 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99814 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47151 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47196 * 120.00214 * 23 21 19 26 26 H 1.48500 * 109.46879 * 240.00070 * 23 21 19 27 27 C 1.53786 * 87.17388 * 334.61227 * 16 15 13 28 28 H 1.08998 * 109.47377 * 299.99990 * 1 2 3 29 29 H 1.09002 * 109.46970 * 59.99984 * 1 2 3 30 30 H 1.09001 * 109.47371 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46418 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46893 * 300.00049 * 3 2 1 33 33 H 1.08998 * 109.47125 * 59.99855 * 3 2 1 34 34 H 1.08996 * 109.47205 * 299.99506 * 4 2 1 35 35 H 1.09002 * 109.47274 * 60.00077 * 4 2 1 36 36 H 1.09000 * 109.46842 * 179.97438 * 4 2 1 37 37 H 1.09000 * 109.47149 * 59.99908 * 8 5 2 38 38 H 1.09005 * 109.47548 * 300.00343 * 8 5 2 39 39 H 0.96999 * 120.00140 * 359.97438 * 11 9 8 40 40 H 1.09001 * 109.47236 * 60.00177 * 12 11 9 41 41 H 1.09005 * 109.47583 * 299.99807 * 12 11 9 42 42 H 1.08994 * 113.61261 * 25.43826 * 15 13 12 43 43 H 1.08995 * 113.61653 * 254.52881 * 15 13 12 44 44 H 0.97000 * 120.00738 * 23.20410 * 18 16 15 45 45 H 0.97004 * 119.99151 * 179.97438 * 22 21 19 46 46 H 1.08994 * 113.61267 * 139.93978 * 27 16 15 47 47 H 1.08999 * 113.61358 * 270.84184 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 16 2.1347 -0.8551 1.4811 6 8 1.5478 -0.2495 2.6248 7 8 3.5495 -0.9571 1.3991 8 6 1.4229 -2.5108 1.2747 9 6 1.8270 -3.3799 2.4376 10 8 2.5267 -2.9271 3.3186 11 7 1.4117 -4.6606 2.4981 12 6 1.8050 -5.5056 3.6283 13 6 1.2046 -6.9021 3.4543 14 1 1.2991 -7.2796 2.4361 15 6 1.6577 -7.9056 4.5279 16 6 0.2125 -8.4314 4.5340 17 1 0.0348 -9.2285 3.8121 18 7 -0.2890 -8.7536 5.8722 19 6 -1.3158 -9.6474 6.0218 20 1 -1.7587 -10.1113 5.1528 21 6 -1.7872 -9.9570 7.2901 22 7 -1.2477 -9.3912 8.3489 23 14 -3.1873 -11.1766 7.4941 24 1 -3.6155 -11.6665 6.1592 25 1 -2.7289 -12.3231 8.3190 26 1 -4.3311 -10.5093 8.1662 27 6 -0.2148 -7.0412 4.0342 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2494 37 1 1.7894 -2.9508 0.3473 38 1 0.3360 -2.4370 1.2372 39 1 0.8524 -5.0229 1.7933 40 1 1.4382 -5.0658 4.5558 41 1 2.8919 -5.5792 3.6661 42 1 1.9557 -7.4369 5.4657 43 1 2.3852 -8.6325 4.1669 44 1 0.1087 -8.3369 6.6527 45 1 -1.5775 -9.6073 9.2352 46 1 -0.9965 -7.0714 3.2753 47 1 -0.4295 -6.3357 4.8368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691473708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:01 Heat of formation + Delta-G solvation = -84.246320 kcal Electronic energy + Delta-G solvation = -26448.483625 eV Core-core repulsion = 22566.558037 eV Total energy + Delta-G solvation = -3881.925588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.08009 -38.54281 -37.30438 -37.17562 -36.25918 -34.90750 -33.37055 -31.38137 -30.14750 -28.07676 -28.05276 -26.95939 -25.14492 -23.88872 -22.31831 -21.16869 -21.06507 -19.14405 -18.78897 -17.86451 -17.19043 -17.05895 -16.58569 -16.51245 -15.74073 -15.60118 -14.91958 -14.87391 -14.74609 -14.63031 -14.01353 -13.80289 -13.77862 -13.55610 -13.17313 -13.01624 -12.98760 -12.75780 -12.45282 -12.30535 -12.18716 -11.97609 -11.91097 -11.87023 -11.80842 -11.44029 -11.40585 -11.27810 -10.88245 -10.65901 -10.56480 -10.46488 -10.17033 -10.07507 -9.86821 -9.55419 -9.22793 -8.90027 -6.98832 -5.80427 -3.09574 -0.50237 2.19268 2.32487 2.70757 3.40745 3.43511 3.46043 3.48718 3.51459 3.87032 3.90812 4.16542 4.26708 4.46670 4.55933 4.61705 4.79123 4.89374 4.89605 4.91892 4.99733 5.01140 5.06039 5.12094 5.16284 5.38996 5.42519 5.44184 5.48236 5.49555 5.74938 5.77477 5.87330 6.05563 6.10590 6.24598 6.30258 6.35532 6.53937 6.77060 7.07016 7.12334 7.67139 7.80777 8.38038 9.49128 10.07260 10.41265 11.41924 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026829 B = 0.001929 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.412138 B =14515.171343 C =14705.182862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.547 4.547 3 C -0.138 4.138 4 C -0.143 4.143 5 S 2.454 3.546 6 O -0.916 6.916 7 O -0.918 6.918 8 C -0.664 4.664 9 C 0.538 3.462 10 O -0.531 6.531 11 N -0.710 5.710 12 C 0.126 3.874 13 C -0.128 4.128 14 H 0.089 0.911 15 C -0.141 4.141 16 C 0.166 3.834 17 H 0.075 0.925 18 N -0.713 5.713 19 C -0.244 4.244 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.162 4.162 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.404 0.596 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.386 0.614 45 H 0.255 0.745 46 H 0.054 0.946 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.347 19.106 -24.472 31.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.637 4.637 3 C -0.196 4.196 4 C -0.201 4.201 5 S 2.630 3.370 6 O -0.913 6.913 7 O -0.915 6.915 8 C -0.792 4.792 9 C 0.321 3.679 10 O -0.408 6.408 11 N -0.361 5.361 12 C 0.004 3.996 13 C -0.147 4.147 14 H 0.107 0.893 15 C -0.181 4.181 16 C 0.054 3.946 17 H 0.092 0.908 18 N -0.351 5.351 19 C -0.376 4.376 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.579 5.579 23 Si 0.739 3.261 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.203 4.203 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.178 0.822 38 H 0.179 0.821 39 H 0.239 0.761 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.220 0.780 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.214 19.543 -23.121 30.905 hybrid contribution -1.586 -1.025 -0.741 2.029 sum 4.628 18.518 -23.861 30.556 Atomic orbital electron populations 1.21855 0.89404 1.03652 1.05253 1.29895 1.06712 1.09216 1.17871 1.21720 1.02208 0.90916 1.04763 1.21848 1.02686 0.99855 0.95709 1.07679 0.76079 0.76541 0.76676 1.93578 1.79260 1.73635 1.44825 1.93564 1.26390 1.85182 1.86378 1.30947 1.16115 1.24385 1.07707 1.19074 0.80471 0.82887 0.85441 1.90878 1.37586 1.72977 1.39359 1.45894 1.52796 1.10849 1.26541 1.21618 0.99957 0.89490 0.88578 1.22690 0.99077 0.93335 0.99631 0.89277 1.23434 0.99506 0.97292 0.97886 1.21509 0.90854 0.93039 0.89215 0.90751 1.42425 1.39971 1.51006 1.01710 1.19335 1.09050 1.16825 0.92363 0.91056 1.24786 1.00095 1.00577 0.95525 1.69673 1.44182 1.46494 0.97524 0.86114 0.81858 0.80687 0.77489 1.20556 1.21832 1.21843 1.24004 0.93707 1.02621 0.99980 0.90125 0.89961 0.91218 0.90675 0.89819 0.90634 0.91255 0.89969 0.90203 0.82211 0.82105 0.76146 0.90592 0.91127 0.89962 0.91867 0.78025 0.93459 0.92744 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.54 8.22 37.16 0.31 -0.24 16 2 C -0.55 -2.95 0.87 -90.62 -0.08 -3.02 16 3 C -0.14 -0.73 8.48 37.16 0.32 -0.42 16 4 C -0.14 -0.49 8.22 37.16 0.31 -0.19 16 5 S 2.45 24.84 3.01 -107.50 -0.32 24.52 16 6 O -0.92 -12.85 17.76 -59.54 -1.06 -13.91 16 7 O -0.92 -12.47 17.76 -59.52 -1.06 -13.53 16 8 C -0.66 -4.78 5.38 36.00 0.19 -4.58 16 9 C 0.54 6.65 7.85 -10.99 -0.09 6.57 16 10 O -0.53 -9.18 15.62 2.55 0.04 -9.14 16 11 N -0.71 -7.50 5.56 -60.29 -0.33 -7.83 16 12 C 0.13 1.61 5.51 -4.04 -0.02 1.59 16 13 C -0.13 -1.62 3.75 -89.71 -0.34 -1.96 16 14 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 15 C -0.14 -2.18 7.39 -25.91 -0.19 -2.38 16 16 C 0.17 3.12 4.47 -67.12 -0.30 2.82 16 17 H 0.07 1.38 8.11 -51.93 -0.42 0.96 16 18 N -0.71 -17.59 5.41 -52.63 -0.28 -17.88 16 19 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 23 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 C -0.16 -2.57 7.45 -25.83 -0.19 -2.76 16 28 H 0.08 0.36 8.06 -51.93 -0.42 -0.06 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.13 6.56 -51.93 -0.34 -0.21 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.10 6.56 -51.93 -0.34 -0.24 16 35 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.08 0.31 8.06 -51.93 -0.42 -0.10 16 37 H 0.16 0.49 6.87 -51.92 -0.36 0.14 16 38 H 0.16 0.58 6.87 -51.92 -0.36 0.23 16 39 H 0.40 2.87 8.47 -40.82 -0.35 2.53 16 40 H 0.08 1.12 7.85 -51.93 -0.41 0.71 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.39 10.18 7.90 -40.82 -0.32 9.86 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.08 1.42 7.90 -51.93 -0.41 1.01 16 LS Contribution 392.81 15.07 5.92 5.92 Total: -1.00 -38.48 392.81 -9.64 -48.12 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -7.91 Total: 5.82 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -0.33 Total: -11.90 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.10 Total: -53.06 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -2.07 Total: -36.58 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: 24.84 SS G_CDS: -0.32 Total: 24.52 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.48 -9.64 -48.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691473708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.124 kcal (2) G-P(sol) polarization free energy of solvation -38.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds