Wall clock time and date at job start Tue Mar 31 2020 16:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00162 * 2 1 4 4 C 1.53004 * 109.46564 * 270.00033 * 3 2 1 5 5 C 1.53001 * 109.46823 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47239 * 179.97438 * 5 4 3 7 7 C 1.36941 * 119.99907 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00075 * 359.97438 * 7 6 5 9 9 C 1.38811 * 119.99619 * 180.02562 * 7 6 5 10 10 N 1.31618 * 120.00316 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00107 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47415 * 89.99532 * 11 9 7 13 13 H 1.48494 * 109.47274 * 209.99887 * 11 9 7 14 14 H 1.48506 * 109.46935 * 329.99983 * 11 9 7 15 15 C 1.34776 * 120.00175 * 179.97438 * 2 1 3 16 16 O 1.21629 * 120.00651 * 184.55789 * 15 2 1 17 17 C 1.47220 * 119.99776 * 4.55636 * 15 2 1 18 18 C 1.37962 * 126.81112 * 322.85328 * 17 15 2 19 19 N 1.34139 * 107.93611 * 180.02562 * 18 17 15 20 20 C 1.46504 * 125.13705 * 179.97438 * 19 18 17 21 21 N 1.39770 * 109.72626 * 359.97438 * 19 18 17 22 22 C 1.31586 * 109.04767 * 0.02562 * 21 19 18 23 23 C 1.47656 * 126.53718 * 179.97438 * 22 21 19 24 24 C 1.36021 * 125.93965 * 324.73714 * 23 22 21 25 25 C 1.40905 * 106.73825 * 179.91404 * 24 23 22 26 26 C 1.34759 * 107.03774 * 0.35510 * 25 24 23 27 27 O 1.34302 * 108.68166 * 359.77794 * 26 25 24 28 28 H 1.09000 * 109.47019 * 264.82032 * 1 2 3 29 29 H 1.08995 * 109.47003 * 24.81935 * 1 2 3 30 30 H 1.08994 * 109.46980 * 144.82101 * 1 2 3 31 31 H 1.08997 * 109.47157 * 29.99487 * 3 2 1 32 32 H 1.08997 * 109.47503 * 150.00317 * 3 2 1 33 33 H 1.08997 * 109.46938 * 299.99589 * 4 3 2 34 34 H 1.09002 * 109.47437 * 59.99941 * 4 3 2 35 35 H 1.09004 * 109.47487 * 300.00247 * 5 4 3 36 36 H 1.09002 * 109.46995 * 59.99875 * 5 4 3 37 37 H 0.97000 * 119.99748 * 359.97438 * 6 5 4 38 38 H 0.97004 * 120.00456 * 180.02562 * 10 9 7 39 39 H 1.07994 * 126.03711 * 0.02562 * 18 17 15 40 40 H 1.09004 * 109.46868 * 269.99853 * 20 19 18 41 41 H 1.08994 * 109.47046 * 29.99906 * 20 19 18 42 42 H 1.08999 * 109.47031 * 149.99996 * 20 19 18 43 43 H 1.07997 * 126.63405 * 0.04420 * 24 23 22 44 44 H 1.07994 * 126.48447 * 180.16584 * 25 24 23 45 45 H 1.08003 * 125.65932 * 179.76471 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 6 3.2170 3.0356 -1.4426 6 7 3.4616 3.4582 -2.8239 7 6 4.1349 4.6241 -3.0741 8 1 4.4852 5.2322 -2.2533 9 6 4.3663 5.0247 -4.3829 10 7 3.9390 4.2838 -5.3832 11 14 5.2841 6.6154 -4.7244 12 1 6.7400 6.3374 -4.8146 13 1 4.8104 7.1947 -6.0070 14 1 5.0315 7.5789 -3.6228 15 6 2.1389 -1.1672 0.0005 16 8 3.3523 -1.1689 0.0842 17 6 1.4063 -2.4402 -0.1002 18 6 0.1878 -2.7402 0.4730 19 7 -0.1265 -4.0009 0.1392 20 6 -1.3452 -4.7029 0.5495 21 7 0.8843 -4.5435 -0.6592 22 6 1.8273 -3.6417 -0.8300 23 6 3.0716 -3.8074 -1.6074 24 6 3.8010 -4.9507 -1.7126 25 6 4.8975 -4.6571 -2.5474 26 6 4.7892 -3.3611 -2.9004 27 8 3.6851 -2.8510 -2.3309 28 1 -0.3633 -0.0928 1.0235 29 1 -0.3633 0.9327 -0.4314 30 1 -0.3633 -0.8399 -0.5920 31 1 1.6085 2.0284 0.5137 32 1 3.1500 1.1384 0.5138 33 1 3.0415 0.9506 -1.9563 34 1 1.5000 1.8406 -1.9564 35 1 2.6276 3.7952 -0.9289 36 1 4.1694 2.9057 -0.9287 37 1 3.1474 2.9117 -3.5611 38 1 4.1010 4.5635 -6.2978 39 1 -0.4080 -2.0773 1.0828 40 1 -1.1667 -5.2196 1.4926 41 1 -2.1537 -3.9832 0.6768 42 1 -1.6216 -5.4283 -0.2156 43 1 3.5810 -5.9005 -1.2480 44 1 5.6788 -5.3406 -2.8453 45 1 5.4763 -2.8221 -3.5358 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754370775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:59 Heat of formation + Delta-G solvation = 84.033810 kcal Electronic energy + Delta-G solvation = -28039.383843 eV Core-core repulsion = 24061.604229 eV Total energy + Delta-G solvation = -3977.779614 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.48193 -41.42349 -39.34064 -36.02769 -34.76558 -34.04982 -32.93042 -32.38576 -30.98188 -29.84081 -29.39469 -27.18250 -26.81993 -25.25914 -23.34605 -22.44688 -22.16715 -21.33307 -20.81869 -20.12853 -19.41071 -17.69038 -17.16906 -16.98001 -16.46803 -16.14463 -15.84481 -15.76823 -15.12636 -14.95061 -14.51495 -14.38802 -14.17843 -13.63769 -13.28729 -13.20213 -13.09456 -12.98184 -12.95421 -12.84589 -12.69670 -12.53290 -12.23476 -11.86762 -11.81729 -11.27199 -10.86118 -10.79945 -10.66985 -10.30775 -10.24039 -10.03479 -9.86128 -9.81039 -9.64808 -9.02126 -8.79996 -8.57121 -8.24204 -6.84191 -5.69272 -2.97675 1.05601 1.30933 1.77371 2.21895 2.67410 2.85853 3.10113 3.31317 3.48466 3.53025 3.54915 4.09437 4.10926 4.45768 4.63788 4.65591 4.72448 4.89155 4.95471 4.98535 4.99192 5.06820 5.15326 5.18200 5.36252 5.46591 5.55514 5.59868 5.63687 5.79411 5.83908 5.91593 6.01838 6.09580 6.19001 6.36282 6.39401 6.44744 6.48189 6.64853 6.95915 6.98128 6.99790 7.23302 7.43885 7.76436 8.31115 8.49718 9.60410 10.19908 10.54621 11.53846 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013125 B = 0.002774 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.800263 B =10091.359280 C =11579.332767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.612 5.612 3 C 0.122 3.878 4 C -0.139 4.139 5 C 0.157 3.843 6 N -0.733 5.733 7 C -0.237 4.237 8 H 0.070 0.930 9 C -0.016 4.016 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.282 1.282 15 C 0.591 3.409 16 O -0.521 6.521 17 C -0.263 4.263 18 C 0.095 3.905 19 N -0.362 5.362 20 C 0.097 3.903 21 N -0.267 5.267 22 C 0.197 3.803 23 C 0.052 3.948 24 C -0.166 4.166 25 C -0.224 4.224 26 C -0.009 4.009 27 O -0.148 6.148 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.018 0.982 36 H 0.020 0.980 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.191 0.809 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.753 -21.418 14.131 28.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.346 5.346 3 C -0.001 4.001 4 C -0.178 4.178 5 C 0.029 3.971 6 N -0.377 5.377 7 C -0.368 4.368 8 H 0.088 0.912 9 C -0.212 4.212 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.208 1.208 15 C 0.378 3.622 16 O -0.397 6.397 17 C -0.278 4.278 18 C -0.052 4.052 19 N -0.142 5.142 20 C -0.044 4.044 21 N -0.090 5.090 22 C 0.030 3.970 23 C 0.000 4.000 24 C -0.187 4.187 25 C -0.243 4.243 26 C -0.079 4.079 27 O -0.041 6.041 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.208 0.792 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.168 0.832 44 H 0.170 0.830 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -12.682 -22.195 13.984 29.138 hybrid contribution 0.539 1.336 -0.321 1.476 sum -12.142 -20.859 13.663 27.735 Atomic orbital electron populations 1.21976 0.80278 1.03883 1.00862 1.47691 1.06658 1.06099 1.74106 1.21489 0.97568 0.83033 0.97980 1.22066 1.01066 0.98934 0.95752 1.20539 0.96042 0.91887 0.88656 1.42362 1.68303 1.25922 1.01156 1.19252 1.27652 0.98108 0.91784 0.91173 1.24749 1.01824 0.99062 0.95581 1.69670 1.51609 1.38955 0.98112 0.86178 0.79550 0.83175 0.77238 1.21732 1.21820 1.20787 1.17113 0.86586 0.82101 0.76367 1.90821 1.13240 1.86871 1.48739 1.21312 0.98014 0.96833 1.11625 1.23159 0.95740 0.87385 0.98955 1.48125 1.17238 1.10086 1.38786 1.22037 0.81966 0.98481 1.01927 1.77432 0.97599 1.20476 1.13448 1.20054 0.91072 0.90513 0.95391 1.18480 0.93864 0.87563 1.00138 1.21732 0.96055 0.98292 1.02614 1.21727 1.01770 0.96792 1.04034 1.24315 0.89065 0.94506 1.00012 1.84180 1.32681 1.37495 1.49775 0.92864 0.90317 0.91220 0.90506 0.89571 0.91482 0.92088 0.96456 0.96202 0.78313 0.93585 0.79204 0.90140 0.88764 0.88680 0.83217 0.83011 0.77476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 9.03 59.85 0.54 1.16 16 2 N -0.61 -8.01 2.87 -182.93 -0.53 -8.54 16 3 C 0.12 1.75 5.42 -4.04 -0.02 1.73 16 4 C -0.14 -2.49 5.65 -26.73 -0.15 -2.64 16 5 C 0.16 3.36 6.26 -4.04 -0.03 3.33 16 6 N -0.73 -19.77 5.60 -59.91 -0.34 -20.10 16 7 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 10 N -0.93 -29.25 13.06 55.49 0.72 -28.52 16 11 Si 0.91 23.05 29.55 -169.99 -5.02 18.02 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.59 9.24 7.53 -12.61 -0.09 9.14 16 16 O -0.52 -10.24 15.99 5.25 0.08 -10.16 16 17 C -0.26 -3.50 5.57 -102.91 -0.57 -4.07 16 18 C 0.10 0.82 9.16 -16.64 -0.15 0.67 16 19 N -0.36 -3.13 3.95 -67.65 -0.27 -3.40 16 20 C 0.10 0.32 11.39 59.85 0.68 1.00 16 21 N -0.27 -3.34 12.51 34.49 0.43 -2.91 16 22 C 0.20 2.86 7.29 -80.69 -0.59 2.27 16 23 C 0.05 0.80 6.84 -36.53 -0.25 0.55 16 24 C -0.17 -2.19 10.85 -39.37 -0.43 -2.62 16 25 C -0.22 -2.68 10.89 -39.81 -0.43 -3.11 16 26 C -0.01 -0.12 12.08 29.50 0.36 0.24 16 27 O -0.15 -2.48 10.30 4.61 0.05 -2.43 16 28 H 0.05 0.29 7.34 -51.93 -0.38 -0.09 16 29 H 0.08 0.63 8.03 -51.93 -0.42 0.22 16 30 H 0.07 0.55 5.89 -51.93 -0.31 0.24 16 31 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.09 1.37 7.36 -51.93 -0.38 0.98 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.38 10.88 7.67 -40.82 -0.31 10.57 16 38 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.19 0.84 6.26 -52.49 -0.33 0.51 16 40 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.09 0.05 8.13 -51.93 -0.42 -0.37 16 42 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 45 H 0.21 2.08 8.06 -52.48 -0.42 1.66 16 LS Contribution 386.53 15.07 5.82 5.82 Total: -1.00 -39.52 386.53 -6.75 -46.26 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -6.32 Total: 5.95 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -1.39 Total: -0.01 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: 0.03 Total: -63.47 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.13 Total: -12.59 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -39.52 -6.75 -46.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754370775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.299 kcal (2) G-P(sol) polarization free energy of solvation -39.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds