Wall clock time and date at job start Tue Mar 31 2020 16:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99628 * 2 1 4 4 H 1.48496 * 109.47167 * 269.72012 * 3 2 1 5 5 H 1.48500 * 109.47292 * 29.72702 * 3 2 1 6 6 H 1.48506 * 109.47094 * 149.72231 * 3 2 1 7 7 C 1.38805 * 120.00488 * 179.72110 * 2 1 3 8 8 H 1.07996 * 120.00567 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99782 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64625 * 14.70518 * 9 7 2 11 11 C 1.54910 * 104.83486 * 155.83328 * 10 9 7 12 12 C 1.55163 * 101.57707 * 37.00650 * 11 10 9 13 13 C 1.47022 * 125.65203 * 194.39434 * 9 7 2 14 14 H 1.09008 * 109.88199 * 300.51904 * 13 9 7 15 15 C 1.53003 * 109.88008 * 61.67578 * 13 9 7 16 16 N 1.46500 * 109.47038 * 183.74371 * 15 13 9 17 17 C 1.34776 * 119.99797 * 185.66485 * 16 15 13 18 18 O 1.21276 * 120.00305 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99724 * 180.02562 * 17 16 15 20 20 C 1.50700 * 109.46846 * 180.02562 * 19 17 16 21 21 C 1.32583 * 120.00085 * 124.99927 * 20 19 17 22 22 C 1.47790 * 119.99909 * 179.97438 * 21 20 19 23 23 C 1.39550 * 120.11871 * 359.72308 * 22 21 20 24 24 C 1.37925 * 119.88355 * 179.69807 * 23 22 21 25 25 C 1.38578 * 120.11635 * 0.57729 * 24 23 22 26 26 F 1.35106 * 119.88512 * 179.73982 * 25 24 23 27 27 C 1.38579 * 120.23182 * 359.72139 * 25 24 23 28 28 C 1.37923 * 120.11798 * 359.97438 * 27 25 24 29 29 H 0.97004 * 119.99726 * 0.28288 * 1 2 3 30 30 H 1.09001 * 110.37002 * 274.67375 * 10 9 7 31 31 H 1.09005 * 110.36582 * 36.88595 * 10 9 7 32 32 H 1.08994 * 111.00957 * 155.08213 * 11 10 9 33 33 H 1.09006 * 111.00491 * 278.93943 * 11 10 9 34 34 H 1.08995 * 110.71953 * 82.86390 * 12 11 10 35 35 H 1.09004 * 110.71693 * 206.13719 * 12 11 10 36 36 H 1.09005 * 109.47140 * 303.74548 * 15 13 9 37 37 H 1.09003 * 109.46670 * 63.74348 * 15 13 9 38 38 H 0.97000 * 119.99708 * 5.66891 * 16 15 13 39 39 H 1.09008 * 109.46553 * 299.99585 * 19 17 16 40 40 H 1.08995 * 109.47353 * 59.99627 * 19 17 16 41 41 H 1.07996 * 119.99825 * 304.99404 * 20 19 17 42 42 H 1.08005 * 119.99886 * 359.97438 * 21 20 19 43 43 H 1.07996 * 120.05482 * 359.97438 * 23 22 21 44 44 H 1.08003 * 119.94551 * 180.29424 * 24 23 22 45 45 H 1.07995 * 119.93842 * 179.97438 * 27 25 24 46 46 H 1.07994 * 120.06275 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5035 2.0431 -1.4000 5 1 1.4446 2.6544 0.6942 6 1 3.5448 1.4420 0.7059 7 6 2.0103 -1.2020 0.0059 8 1 3.0903 -1.2020 0.0054 9 7 1.3256 -2.3880 0.0111 10 6 -0.1074 -2.5541 -0.2928 11 6 -0.2461 -4.0250 -0.7587 12 6 0.7647 -4.7436 0.1738 13 6 1.8992 -3.7073 0.3144 14 1 2.7003 -3.9339 -0.3893 15 6 2.4402 -3.7228 1.7456 16 7 3.0887 -5.0099 2.0085 17 6 3.5406 -5.2965 3.2455 18 8 3.4107 -4.4888 4.1408 19 6 4.2082 -6.6202 3.5158 20 6 4.6168 -6.6901 4.9646 21 6 4.2087 -7.7000 5.7206 22 6 4.6099 -7.7687 7.1413 23 6 5.4230 -6.7751 7.6882 24 6 5.7894 -6.8408 9.0163 25 6 5.3614 -7.8974 9.8042 26 9 5.7274 -7.9598 11.1033 27 6 4.5590 -8.8900 9.2645 28 6 4.1817 -8.8306 7.9392 29 1 -0.4850 0.8401 -0.0041 30 1 -0.7072 -2.3811 0.6007 31 1 -0.4079 -1.8725 -1.0885 32 1 -1.2588 -4.3930 -0.5947 33 1 0.0425 -4.1325 -1.8044 34 1 0.3113 -4.9582 1.1414 35 1 1.1356 -5.6573 -0.2908 36 1 3.1655 -2.9186 1.8686 37 1 1.6175 -3.5806 2.4464 38 1 3.1929 -5.6557 1.2923 39 1 3.5123 -7.4298 3.2955 40 1 5.0909 -6.7178 2.8838 41 1 5.2421 -5.9176 5.3872 42 1 3.5831 -8.4724 5.2981 43 1 5.7610 -5.9539 7.0738 44 1 6.4147 -6.0698 9.4418 45 1 4.2286 -9.7115 9.8828 46 1 3.5561 -9.6044 7.5196 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663503820.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:30 Heat of formation + Delta-G solvation = -45.188069 kcal Electronic energy + Delta-G solvation = -26656.652948 eV Core-core repulsion = 22653.349891 eV Total energy + Delta-G solvation = -4003.303057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.92342 -40.81088 -40.01935 -39.24676 -35.91830 -35.57880 -34.39794 -32.17792 -32.08859 -31.36053 -30.30609 -27.98927 -26.64956 -25.38078 -24.27594 -23.29369 -22.04807 -21.47193 -21.12740 -20.29150 -18.90708 -18.72230 -17.90476 -17.46477 -17.15255 -16.99455 -16.61836 -16.59742 -16.23304 -15.83353 -15.63881 -15.35352 -14.82676 -14.60139 -14.50985 -14.44681 -13.98228 -13.73793 -13.66362 -13.63925 -13.53296 -13.29961 -12.97448 -12.87656 -12.65685 -12.58139 -12.31045 -12.04425 -11.86861 -11.78892 -11.70386 -11.47984 -11.38607 -11.13170 -10.76088 -10.68051 -10.11983 -10.01120 -8.98571 -8.85503 -7.89360 -5.26615 -0.22134 0.26685 1.40909 1.43154 1.45305 1.53246 1.73990 2.31839 2.51073 2.79820 3.26637 3.30568 3.64502 3.71070 3.73799 3.92010 3.93407 4.01775 4.02866 4.18354 4.26470 4.28696 4.37257 4.47599 4.49938 4.58681 4.64235 4.75401 4.76443 4.96183 4.99249 5.00969 5.02544 5.14221 5.16849 5.23403 5.24325 5.31705 5.42199 5.47232 5.61323 5.65375 5.67057 5.78385 5.83263 5.93513 6.22908 6.69162 7.08559 7.39304 7.76345 8.41911 9.21593 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016819 B = 0.001912 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.413542 B =14638.099992 C =15699.060042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.062 4.062 3 Si 0.971 3.029 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.273 1.273 7 C -0.238 4.238 8 H 0.077 0.923 9 N -0.612 5.612 10 C 0.172 3.828 11 C -0.134 4.134 12 C -0.111 4.111 13 C 0.147 3.853 14 H 0.054 0.946 15 C 0.129 3.871 16 N -0.708 5.708 17 C 0.503 3.497 18 O -0.597 6.597 19 C -0.098 4.098 20 C -0.127 4.127 21 C -0.120 4.120 22 C -0.071 4.071 23 C -0.101 4.101 24 C -0.160 4.160 25 C 0.071 3.929 26 F -0.150 7.150 27 C -0.153 4.153 28 C -0.080 4.080 29 H 0.247 0.753 30 H -0.011 1.011 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.028 0.972 37 H 0.031 0.969 38 H 0.418 0.582 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.103 0.897 42 H 0.150 0.850 43 H 0.136 0.864 44 H 0.143 0.857 45 H 0.156 0.844 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.345 -24.701 9.303 28.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.256 4.256 3 Si 0.800 3.200 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.198 1.198 7 C -0.367 4.367 8 H 0.095 0.905 9 N -0.337 5.337 10 C 0.047 3.953 11 C -0.173 4.173 12 C -0.148 4.148 13 C 0.040 3.960 14 H 0.072 0.928 15 C 0.002 3.998 16 N -0.361 5.361 17 C 0.291 3.709 18 O -0.478 6.478 19 C -0.137 4.137 20 C -0.146 4.146 21 C -0.138 4.138 22 C -0.072 4.072 23 C -0.119 4.119 24 C -0.178 4.178 25 C 0.052 3.948 26 F -0.129 7.129 27 C -0.172 4.172 28 C -0.098 4.098 29 H 0.056 0.944 30 H 0.007 0.993 31 H 0.053 0.947 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.127 0.873 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.256 0.744 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.121 0.879 42 H 0.167 0.833 43 H 0.154 0.846 44 H 0.161 0.839 45 H 0.173 0.827 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 9.215 -23.899 9.960 27.483 hybrid contribution 0.342 1.748 0.356 1.817 sum 9.557 -22.151 10.316 26.238 Atomic orbital electron populations 1.70142 1.06283 1.25340 1.57644 1.25695 0.96535 1.01054 1.02324 0.85187 0.77643 0.79538 0.77643 1.20750 1.22288 1.19822 1.19292 0.90736 0.83635 1.43046 0.90524 1.44754 1.06792 1.02304 1.79828 1.21271 0.84166 0.93595 0.96222 1.22878 0.99739 0.95187 0.99460 1.22592 0.95017 0.97474 0.99756 1.21365 0.96113 0.86585 0.91902 0.92806 1.21610 0.95190 0.84675 0.98287 1.45878 1.59645 1.18861 1.11742 1.21496 0.77913 0.89797 0.81680 1.90713 1.58840 1.52276 1.46000 1.20798 1.03324 0.93824 0.95766 1.23015 0.99190 0.97409 0.94958 1.21780 1.01031 1.00097 0.90857 1.19385 0.97705 0.95194 0.94868 1.21400 0.97138 0.98941 0.94408 1.21253 1.03091 0.98824 0.94663 1.18090 1.00275 0.97925 0.78544 1.91472 1.90327 1.96452 1.34664 1.21369 0.99288 0.99405 0.97106 1.21456 0.98400 0.97742 0.92179 0.94363 0.99273 0.94689 0.90008 0.91022 0.91780 0.87322 0.95332 0.95018 0.74430 0.84773 0.84640 0.87933 0.83253 0.84614 0.83948 0.82652 0.81805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.36 10.58 21.65 0.23 -57.14 16 2 C -0.06 -3.59 5.47 84.86 0.46 -3.12 16 3 Si 0.97 46.55 29.55 68.60 2.03 48.58 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 6 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 7 C -0.24 -13.22 9.74 84.03 0.82 -12.40 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.61 -30.39 3.13 -668.27 -2.09 -32.48 16 10 C 0.17 8.32 5.42 86.86 0.47 8.79 16 11 C -0.13 -4.48 7.08 31.99 0.23 -4.26 16 12 C -0.11 -3.15 6.16 31.78 0.20 -2.95 16 13 C 0.15 5.42 3.20 45.34 0.15 5.56 16 14 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 15 C 0.13 4.84 5.09 86.38 0.44 5.28 16 16 N -0.71 -17.93 5.34 -463.05 -2.47 -20.41 16 17 C 0.50 13.37 7.82 87.66 0.69 14.05 16 18 O -0.60 -23.12 16.02 -3.02 -0.05 -23.17 16 19 C -0.10 -1.38 6.15 29.10 0.18 -1.20 16 20 C -0.13 -2.22 8.18 24.53 0.20 -2.02 16 21 C -0.12 -1.75 9.52 23.64 0.23 -1.53 16 22 C -0.07 -1.20 5.87 -20.12 -0.12 -1.32 16 23 C -0.10 -1.90 9.40 22.51 0.21 -1.69 16 24 C -0.16 -2.98 10.01 22.28 0.22 -2.75 16 25 C 0.07 1.33 7.30 22.43 0.16 1.50 16 26 F -0.15 -3.10 17.26 44.97 0.78 -2.32 16 27 C -0.15 -2.27 10.01 22.28 0.22 -2.04 16 28 C -0.08 -1.07 9.78 22.51 0.22 -0.85 16 29 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 30 H -0.01 -0.59 8.06 -2.39 -0.02 -0.61 16 31 H 0.03 1.91 6.93 -2.38 -0.02 1.89 16 32 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.06 1.85 7.79 -2.39 -0.02 1.83 16 35 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.03 1.27 7.88 -2.38 -0.02 1.25 16 37 H 0.03 1.39 8.04 -2.39 -0.02 1.37 16 38 H 0.42 6.79 8.39 -92.71 -0.78 6.01 16 39 H 0.13 0.99 7.81 -2.38 -0.02 0.97 16 40 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.10 2.14 6.03 -2.91 -0.02 2.12 16 42 H 0.15 1.30 7.87 -2.91 -0.02 1.28 16 43 H 0.14 2.47 6.16 -2.91 -0.02 2.45 16 44 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 45 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 46 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -78.35 385.39 3.61 -74.75 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.21 Total: 13.13 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 4.97 Total: -0.95 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -4.33 Total: -110.02 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.05 Total: -23.17 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.78 Total: -2.32 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -78.35 3.61 -74.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663503820.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.558 kcal (2) G-P(sol) polarization free energy of solvation -78.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds