Wall clock time and date at job start Tue Mar 31 2020 16:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 119.99747 * 2 1 4 4 H 1.48492 * 109.47073 * 355.04007 * 3 2 1 5 5 H 1.48497 * 109.47396 * 235.03248 * 3 2 1 6 6 H 1.48502 * 109.46687 * 115.03747 * 3 2 1 7 7 C 1.38811 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99865 * 180.70649 * 7 2 1 9 9 N 1.36932 * 119.99802 * 0.71363 * 7 2 1 10 10 C 1.47423 * 125.65185 * 118.32706 * 9 7 2 11 11 C 1.54908 * 104.83458 * 204.08834 * 10 9 7 12 12 C 1.55161 * 101.58403 * 322.99198 * 11 10 9 13 13 C 1.47031 * 125.64648 * 298.01577 * 9 7 2 14 14 H 1.09002 * 109.88071 * 59.55923 * 13 9 7 15 15 C 1.53001 * 109.88009 * 298.39846 * 13 9 7 16 16 N 1.46494 * 109.47371 * 58.41065 * 15 13 9 17 17 C 1.34779 * 120.00047 * 85.54776 * 16 15 13 18 18 O 1.21274 * 119.99783 * 4.81810 * 17 16 15 19 19 C 1.50702 * 119.99798 * 184.81621 * 17 16 15 20 20 C 1.50701 * 109.47037 * 185.12410 * 19 17 16 21 21 C 1.32575 * 119.99750 * 127.34004 * 20 19 17 22 22 C 1.47801 * 120.00057 * 9.50429 * 21 20 19 23 23 C 1.39558 * 120.11292 * 217.90490 * 22 21 20 24 24 C 1.37922 * 119.87618 * 179.69725 * 23 22 21 25 25 C 1.38571 * 120.12168 * 0.58299 * 24 23 22 26 26 F 1.35098 * 119.88914 * 179.74543 * 25 24 23 27 27 C 1.38582 * 120.23270 * 359.71203 * 25 24 23 28 28 C 1.37934 * 120.11279 * 359.97438 * 27 25 24 29 29 H 0.97004 * 119.99670 * 185.66972 * 1 2 3 30 30 H 1.09000 * 110.36833 * 322.93099 * 10 9 7 31 31 H 1.08999 * 110.36799 * 85.25123 * 10 9 7 32 32 H 1.09006 * 111.00327 * 81.06421 * 11 10 9 33 33 H 1.08999 * 111.00972 * 204.91398 * 11 10 9 34 34 H 1.09000 * 110.72232 * 153.86051 * 12 11 10 35 35 H 1.08999 * 110.72038 * 276.96315 * 12 11 10 36 36 H 1.09004 * 109.47010 * 178.40972 * 15 13 9 37 37 H 1.09000 * 109.46802 * 298.40525 * 15 13 9 38 38 H 0.96999 * 120.00311 * 265.55202 * 16 15 13 39 39 H 1.08997 * 109.47296 * 305.12603 * 19 17 16 40 40 H 1.08995 * 109.47194 * 65.12518 * 19 17 16 41 41 H 1.07993 * 120.00271 * 307.34802 * 20 19 17 42 42 H 1.07999 * 119.99791 * 189.50060 * 21 20 19 43 43 H 1.07996 * 120.05808 * 359.97438 * 23 22 21 44 44 H 1.08004 * 119.94253 * 180.29401 * 24 23 22 45 45 H 1.07999 * 119.94227 * 180.02562 * 27 25 24 46 46 H 1.08000 * 120.05582 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2896 2.7438 -0.1210 5 1 3.1925 1.6454 -1.1473 6 1 3.0107 1.7502 1.2686 7 6 2.0103 -1.2021 -0.0005 8 1 3.0901 -1.2021 0.0110 9 7 1.3257 -2.3879 -0.0158 10 6 1.3997 -3.4092 -1.0764 11 6 0.0666 -4.1907 -0.9683 12 6 -0.1521 -4.2228 0.5675 13 6 0.3999 -2.8564 1.0259 14 1 -0.4196 -2.1469 1.1398 15 6 1.1455 -3.0120 2.3529 16 7 1.7399 -1.7279 2.7326 17 6 1.0086 -0.8210 3.4103 18 8 -0.1113 -1.1008 3.7821 19 6 1.5827 0.5406 3.7061 20 6 0.6235 1.3121 4.5754 21 6 1.0471 1.8591 5.7064 22 6 2.4923 1.8958 6.0137 23 6 2.9353 1.6958 7.3219 24 6 4.2855 1.7249 7.6021 25 6 5.2008 1.9642 6.5896 26 9 6.5219 1.9967 6.8702 27 6 4.7659 2.1695 5.2899 28 6 3.4182 2.1361 4.9977 29 1 -0.4850 -0.8360 0.0830 30 1 1.4834 -2.9352 -2.0544 31 1 2.2450 -4.0754 -0.9033 32 1 -0.7416 -3.6554 -1.4669 33 1 0.1709 -5.1988 -1.3693 34 1 -1.2123 -4.3121 0.8043 35 1 0.4129 -5.0375 1.0205 36 1 0.4475 -3.3322 3.1265 37 1 1.9324 -3.7580 2.2421 38 1 2.6596 -1.5304 2.4962 39 1 2.5344 0.4286 4.2256 40 1 1.7401 1.0793 2.7718 41 1 -0.4088 1.4194 4.2772 42 1 0.3361 2.2778 6.4031 43 1 2.2225 1.5141 8.1126 44 1 4.6298 1.5655 8.6133 45 1 5.4834 2.3552 4.5044 46 1 3.0803 2.2966 3.9846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663503822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:40 Heat of formation + Delta-G solvation = -23.655950 kcal Electronic energy + Delta-G solvation = -28982.495173 eV Core-core repulsion = 24980.125819 eV Total energy + Delta-G solvation = -4002.369354 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.95911 -39.57608 -38.84103 -37.46238 -34.81036 -33.58367 -32.71645 -31.36330 -30.22242 -29.26039 -28.96541 -27.26381 -24.57843 -23.72987 -23.00734 -22.53109 -20.43678 -20.02668 -19.18390 -19.05861 -17.69241 -17.33446 -16.92027 -16.17989 -15.78144 -15.67438 -15.19817 -15.06576 -14.84829 -14.33970 -14.01565 -13.90238 -13.68072 -13.56495 -13.22367 -12.93581 -12.88069 -12.75062 -12.30979 -12.16269 -11.99539 -11.82302 -11.55385 -11.12122 -10.97000 -10.94534 -10.88321 -10.59701 -10.46118 -10.24682 -10.23795 -9.86552 -9.62575 -9.35032 -9.21787 -9.03352 -8.52560 -8.10733 -8.07993 -6.65272 -5.78625 -3.73767 0.83618 1.14165 2.37402 3.19760 3.34033 3.46206 3.51284 3.57905 4.17133 4.18838 4.39179 4.64383 4.75069 4.78880 5.10293 5.16860 5.26745 5.28198 5.34705 5.45700 5.57798 5.60639 5.67266 5.76852 5.82340 5.88147 5.97325 6.02141 6.03321 6.08178 6.13239 6.19182 6.24513 6.32193 6.38299 6.48440 6.56845 6.61012 6.69121 6.80219 6.84428 6.90790 6.97977 7.19837 7.39802 8.15702 8.39415 8.65140 8.97734 9.09116 9.70175 10.51174 11.13186 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014248 B = 0.003585 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.761031 B = 7809.186180 C = 8238.101150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.006 3.994 3 Si 1.047 2.953 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.338 4.338 8 H 0.037 0.963 9 N -0.588 5.588 10 C 0.127 3.873 11 C -0.133 4.133 12 C -0.126 4.126 13 C 0.130 3.870 14 H 0.055 0.945 15 C 0.119 3.881 16 N -0.693 5.693 17 C 0.529 3.471 18 O -0.560 6.560 19 C -0.134 4.134 20 C -0.080 4.080 21 C -0.156 4.156 22 C -0.052 4.052 23 C -0.086 4.086 24 C -0.154 4.154 25 C 0.088 3.912 26 F -0.144 7.144 27 C -0.151 4.151 28 C -0.088 4.088 29 H 0.278 0.722 30 H 0.040 0.960 31 H 0.014 0.986 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.400 0.600 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.137 0.863 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.099 1.292 10.788 12.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.202 4.202 3 Si 0.877 3.123 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.468 4.468 8 H 0.055 0.945 9 N -0.314 5.314 10 C 0.003 3.997 11 C -0.172 4.172 12 C -0.164 4.164 13 C 0.023 3.977 14 H 0.073 0.927 15 C -0.007 4.007 16 N -0.340 5.340 17 C 0.315 3.685 18 O -0.440 6.440 19 C -0.174 4.174 20 C -0.099 4.099 21 C -0.174 4.174 22 C -0.052 4.052 23 C -0.104 4.104 24 C -0.173 4.173 25 C 0.069 3.931 26 F -0.122 7.122 27 C -0.169 4.169 28 C -0.106 4.106 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.031 0.969 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.234 0.766 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.155 0.845 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.202 2.822 10.959 12.455 hybrid contribution 0.884 -1.566 -0.210 1.811 sum 6.086 1.256 10.749 12.416 Atomic orbital electron populations 1.70687 1.06607 1.31854 1.43914 1.26365 0.97069 1.01481 0.95284 0.83878 0.75239 0.76603 0.76603 1.20590 1.21474 1.21219 1.19206 0.89582 0.82892 1.55073 0.94529 1.44178 1.52451 1.18213 1.16591 1.21770 0.93164 0.91306 0.93497 1.22707 0.99542 0.99060 0.95860 1.22521 0.99936 0.97724 0.96258 1.21667 0.93835 0.92968 0.89261 0.92739 1.21781 0.97286 0.84372 0.97281 1.45464 1.16116 1.16969 1.55461 1.20018 0.85531 0.85580 0.77332 1.90604 1.19624 1.79544 1.54210 1.21258 0.99386 0.94800 1.01907 1.23072 1.00278 0.93195 0.93311 1.21489 0.92459 1.05316 0.98119 1.19194 0.93929 0.99086 0.92990 1.21125 0.94597 0.98348 0.96323 1.21042 0.93204 1.03992 0.99044 1.17788 0.77514 1.03564 0.94233 1.91483 1.32248 1.94102 1.94401 1.21121 0.97054 1.03512 0.95238 1.21452 0.91696 0.97556 0.99868 0.90837 0.94201 0.96853 0.91969 0.92537 0.92218 0.92261 0.92032 0.92111 0.76579 0.88546 0.87219 0.85471 0.85666 0.84913 0.84924 0.84544 0.84255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.40 13.64 55.49 0.76 -24.64 16 2 C 0.01 0.16 5.48 -17.43 -0.10 0.06 16 3 Si 1.05 22.70 28.32 -169.99 -4.81 17.88 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.28 -5.35 6.43 56.52 0.36 -4.99 16 7 C -0.34 -8.50 7.63 -15.06 -0.11 -8.61 16 8 H 0.04 0.94 7.83 -52.49 -0.41 0.53 16 9 N -0.59 -13.82 2.60 -162.56 -0.42 -14.24 16 10 C 0.13 2.67 7.23 -2.53 -0.02 2.65 16 11 C -0.13 -2.41 7.09 -24.58 -0.17 -2.58 16 12 C -0.13 -2.28 6.48 -24.89 -0.16 -2.44 16 13 C 0.13 2.82 2.96 -66.94 -0.20 2.62 16 14 H 0.05 1.43 6.03 -51.93 -0.31 1.12 16 15 C 0.12 2.34 5.60 -4.04 -0.02 2.32 16 16 N -0.69 -13.66 3.87 -60.30 -0.23 -13.90 16 17 C 0.53 10.90 7.78 -10.98 -0.09 10.82 16 18 O -0.56 -13.23 15.64 5.56 0.09 -13.14 16 19 C -0.13 -2.33 4.46 -29.03 -0.13 -2.46 16 20 C -0.08 -1.27 8.71 -36.21 -0.32 -1.59 16 21 C -0.16 -2.04 9.79 -37.58 -0.37 -2.41 16 22 C -0.05 -0.65 5.11 -105.01 -0.54 -1.19 16 23 C -0.09 -0.94 9.78 -39.21 -0.38 -1.32 16 24 C -0.15 -1.65 10.01 -39.57 -0.40 -2.05 16 25 C 0.09 1.06 7.30 -39.33 -0.29 0.77 16 26 F -0.14 -1.78 17.26 2.25 0.04 -1.75 16 27 C -0.15 -1.80 10.01 -39.57 -0.40 -2.19 16 28 C -0.09 -1.11 7.35 -39.21 -0.29 -1.40 16 29 H 0.28 8.17 5.47 -40.82 -0.22 7.94 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.96 7.82 -51.93 -0.41 0.55 16 36 H 0.06 1.21 7.50 -51.93 -0.39 0.82 16 37 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 38 H 0.40 7.46 8.14 -40.82 -0.33 7.13 16 39 H 0.10 1.47 4.96 -51.93 -0.26 1.21 16 40 H 0.11 2.04 5.41 -51.93 -0.28 1.76 16 41 H 0.13 2.14 8.01 -52.49 -0.42 1.72 16 42 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 43 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 45 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 46 H 0.14 1.79 6.41 -52.49 -0.34 1.46 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -30.06 373.36 -9.36 -39.42 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -6.43 Total: 13.74 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -3.97 Total: -9.00 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.10 Total: -52.78 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.14 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.81 Total: 17.88 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.06 -9.36 -39.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663503822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.761 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds