Wall clock time and date at job start Tue Mar 31 2020 16:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 119.99747 * 2 1 4 4 H 1.48492 * 109.47073 * 355.04007 * 3 2 1 5 5 H 1.48497 * 109.47396 * 235.03248 * 3 2 1 6 6 H 1.48502 * 109.46687 * 115.03747 * 3 2 1 7 7 C 1.38811 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99865 * 180.70649 * 7 2 1 9 9 N 1.36932 * 119.99802 * 0.71363 * 7 2 1 10 10 C 1.47423 * 125.65185 * 118.32706 * 9 7 2 11 11 C 1.54908 * 104.83458 * 204.08834 * 10 9 7 12 12 C 1.55161 * 101.58403 * 322.99198 * 11 10 9 13 13 C 1.47031 * 125.64648 * 298.01577 * 9 7 2 14 14 H 1.09002 * 109.88071 * 59.55923 * 13 9 7 15 15 C 1.53001 * 109.88009 * 298.39846 * 13 9 7 16 16 N 1.46494 * 109.47371 * 58.41065 * 15 13 9 17 17 C 1.34779 * 120.00047 * 85.54776 * 16 15 13 18 18 O 1.21274 * 119.99783 * 4.81810 * 17 16 15 19 19 C 1.50702 * 119.99798 * 184.81621 * 17 16 15 20 20 C 1.50701 * 109.47037 * 185.12410 * 19 17 16 21 21 C 1.32575 * 119.99750 * 127.34004 * 20 19 17 22 22 C 1.47801 * 120.00057 * 9.50429 * 21 20 19 23 23 C 1.39558 * 120.11292 * 217.90490 * 22 21 20 24 24 C 1.37922 * 119.87618 * 179.69725 * 23 22 21 25 25 C 1.38571 * 120.12168 * 0.58299 * 24 23 22 26 26 F 1.35098 * 119.88914 * 179.74543 * 25 24 23 27 27 C 1.38582 * 120.23270 * 359.71203 * 25 24 23 28 28 C 1.37934 * 120.11279 * 359.97438 * 27 25 24 29 29 H 0.97004 * 119.99670 * 185.66972 * 1 2 3 30 30 H 1.09000 * 110.36833 * 322.93099 * 10 9 7 31 31 H 1.08999 * 110.36799 * 85.25123 * 10 9 7 32 32 H 1.09006 * 111.00327 * 81.06421 * 11 10 9 33 33 H 1.08999 * 111.00972 * 204.91398 * 11 10 9 34 34 H 1.09000 * 110.72232 * 153.86051 * 12 11 10 35 35 H 1.08999 * 110.72038 * 276.96315 * 12 11 10 36 36 H 1.09004 * 109.47010 * 178.40972 * 15 13 9 37 37 H 1.09000 * 109.46802 * 298.40525 * 15 13 9 38 38 H 0.96999 * 120.00311 * 265.55202 * 16 15 13 39 39 H 1.08997 * 109.47296 * 305.12603 * 19 17 16 40 40 H 1.08995 * 109.47194 * 65.12518 * 19 17 16 41 41 H 1.07993 * 120.00271 * 307.34802 * 20 19 17 42 42 H 1.07999 * 119.99791 * 189.50060 * 21 20 19 43 43 H 1.07996 * 120.05808 * 359.97438 * 23 22 21 44 44 H 1.08004 * 119.94253 * 180.29401 * 24 23 22 45 45 H 1.07999 * 119.94227 * 180.02562 * 27 25 24 46 46 H 1.08000 * 120.05582 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2896 2.7438 -0.1210 5 1 3.1925 1.6454 -1.1473 6 1 3.0107 1.7502 1.2686 7 6 2.0103 -1.2021 -0.0005 8 1 3.0901 -1.2021 0.0110 9 7 1.3257 -2.3879 -0.0158 10 6 1.3997 -3.4092 -1.0764 11 6 0.0666 -4.1907 -0.9683 12 6 -0.1521 -4.2228 0.5675 13 6 0.3999 -2.8564 1.0259 14 1 -0.4196 -2.1469 1.1398 15 6 1.1455 -3.0120 2.3529 16 7 1.7399 -1.7279 2.7326 17 6 1.0086 -0.8210 3.4103 18 8 -0.1113 -1.1008 3.7821 19 6 1.5827 0.5406 3.7061 20 6 0.6235 1.3121 4.5754 21 6 1.0471 1.8591 5.7064 22 6 2.4923 1.8958 6.0137 23 6 2.9353 1.6958 7.3219 24 6 4.2855 1.7249 7.6021 25 6 5.2008 1.9642 6.5896 26 9 6.5219 1.9967 6.8702 27 6 4.7659 2.1695 5.2899 28 6 3.4182 2.1361 4.9977 29 1 -0.4850 -0.8360 0.0830 30 1 1.4834 -2.9352 -2.0544 31 1 2.2450 -4.0754 -0.9033 32 1 -0.7416 -3.6554 -1.4669 33 1 0.1709 -5.1988 -1.3693 34 1 -1.2123 -4.3121 0.8043 35 1 0.4129 -5.0375 1.0205 36 1 0.4475 -3.3322 3.1265 37 1 1.9324 -3.7580 2.2421 38 1 2.6596 -1.5304 2.4962 39 1 2.5344 0.4286 4.2256 40 1 1.7401 1.0793 2.7718 41 1 -0.4088 1.4194 4.2772 42 1 0.3361 2.2778 6.4031 43 1 2.2225 1.5141 8.1126 44 1 4.6298 1.5655 8.6133 45 1 5.4834 2.3552 4.5044 46 1 3.0803 2.2966 3.9846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663503822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:39 Heat of formation + Delta-G solvation = -39.303166 kcal Electronic energy + Delta-G solvation = -28983.173688 eV Core-core repulsion = 24980.125819 eV Total energy + Delta-G solvation = -4003.047868 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.88925 -40.89620 -40.09753 -39.10522 -35.96167 -35.21966 -34.61596 -32.27851 -31.47773 -31.01109 -30.38402 -28.53926 -26.31580 -25.39473 -23.94511 -23.57525 -22.03750 -21.57834 -20.88561 -20.19185 -19.21546 -18.74578 -18.20799 -17.28240 -17.03680 -16.71708 -16.60700 -16.46352 -16.21248 -16.02235 -15.63179 -15.19668 -14.85914 -14.73721 -14.63837 -14.30178 -14.19153 -13.94793 -13.78596 -13.64243 -13.46564 -13.05546 -13.02147 -12.69758 -12.54678 -12.20446 -12.10713 -12.01092 -11.96933 -11.92938 -11.80547 -11.47724 -11.24460 -10.86329 -10.56404 -10.45511 -10.05357 -9.75917 -9.11943 -8.65891 -7.72179 -5.76603 -0.13484 0.26714 1.28210 1.47789 1.58801 1.76099 1.86131 2.58453 2.60565 2.75068 3.28105 3.34843 3.65716 3.70691 3.79095 3.93313 3.94150 4.01998 4.02539 4.15754 4.19960 4.29751 4.35459 4.39461 4.47192 4.58319 4.60872 4.75928 4.78055 4.82451 4.92645 4.97155 4.98233 5.03494 5.12013 5.15148 5.18244 5.19198 5.37818 5.38821 5.51547 5.59699 5.76015 5.79931 5.92502 6.11846 6.57586 6.82014 7.14640 7.50613 7.74321 8.56619 9.10013 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014248 B = 0.003585 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.761031 B = 7809.186180 C = 8238.101150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.031 4.031 3 Si 1.075 2.925 4 H -0.298 1.298 5 H -0.281 1.281 6 H -0.241 1.241 7 C -0.332 4.332 8 H 0.035 0.965 9 N -0.606 5.606 10 C 0.123 3.877 11 C -0.122 4.122 12 C -0.118 4.118 13 C 0.130 3.870 14 H 0.002 0.998 15 C 0.122 3.878 16 N -0.691 5.691 17 C 0.520 3.480 18 O -0.597 6.597 19 C -0.121 4.121 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.072 4.072 23 C -0.078 4.078 24 C -0.150 4.150 25 C 0.080 3.920 26 F -0.147 7.147 27 C -0.156 4.156 28 C -0.097 4.097 29 H 0.261 0.739 30 H 0.020 0.980 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.405 0.595 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.150 0.850 43 H 0.158 0.842 44 H 0.158 0.842 45 H 0.148 0.852 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.056 0.627 12.576 14.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.233 4.233 3 Si 0.899 3.101 4 H -0.224 1.224 5 H -0.207 1.207 6 H -0.165 1.165 7 C -0.462 4.462 8 H 0.053 0.947 9 N -0.333 5.333 10 C -0.002 4.002 11 C -0.160 4.160 12 C -0.157 4.157 13 C 0.023 3.977 14 H 0.020 0.980 15 C -0.004 4.004 16 N -0.338 5.338 17 C 0.308 3.692 18 O -0.479 6.479 19 C -0.159 4.159 20 C -0.141 4.141 21 C -0.135 4.135 22 C -0.072 4.072 23 C -0.096 4.096 24 C -0.169 4.169 25 C 0.061 3.939 26 F -0.126 7.126 27 C -0.174 4.174 28 C -0.115 4.115 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.240 0.760 39 H 0.136 0.864 40 H 0.112 0.888 41 H 0.125 0.875 42 H 0.168 0.832 43 H 0.176 0.824 44 H 0.175 0.825 45 H 0.165 0.835 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.207 2.132 12.747 14.797 hybrid contribution 0.343 -1.389 -0.731 1.606 sum 7.549 0.743 12.016 14.210 Atomic orbital electron populations 1.70819 1.07957 1.30796 1.47358 1.27403 0.96685 1.04575 0.94588 0.83552 0.74644 0.72940 0.78920 1.22411 1.20676 1.16549 1.19348 0.89605 0.83753 1.53511 0.94714 1.44413 1.52273 1.18513 1.18063 1.21862 0.95446 0.91118 0.91750 1.22644 0.97101 1.00414 0.95890 1.22514 1.00685 0.96289 0.96187 1.21571 0.92277 0.93715 0.90119 0.97985 1.21745 0.97766 0.84993 0.95943 1.45504 1.16269 1.17044 1.54965 1.20687 0.85105 0.86743 0.76692 1.90568 1.21230 1.80413 1.55731 1.21161 1.00458 0.92586 1.01733 1.22831 0.99322 0.96647 0.95273 1.21741 0.93429 1.01735 0.96549 1.19284 0.93362 1.00556 0.93975 1.21387 0.95245 0.96931 0.96052 1.21331 0.92855 1.02728 0.99948 1.18005 0.77597 1.03675 0.94662 1.91477 1.32583 1.94142 1.94416 1.21252 0.96987 1.03371 0.95819 1.21462 0.92135 0.98198 0.99747 0.92743 0.96199 0.95038 0.93814 0.88601 0.91549 0.89260 0.92295 0.89670 0.75998 0.86416 0.88780 0.87542 0.83237 0.82405 0.82464 0.83452 0.84861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.23 13.64 21.65 0.30 -54.93 16 2 C -0.03 -1.62 5.48 84.86 0.46 -1.16 16 3 Si 1.08 45.95 28.32 68.60 1.94 47.89 16 4 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 5 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.24 -8.49 6.43 99.48 0.64 -7.85 16 7 C -0.33 -16.86 7.63 84.03 0.64 -16.21 16 8 H 0.04 1.78 7.83 -2.91 -0.02 1.76 16 9 N -0.61 -28.62 2.60 -668.23 -1.74 -30.35 16 10 C 0.12 5.04 7.23 86.86 0.63 5.67 16 11 C -0.12 -4.23 7.09 31.99 0.23 -4.00 16 12 C -0.12 -4.10 6.48 31.79 0.21 -3.90 16 13 C 0.13 5.72 2.96 45.34 0.13 5.85 16 14 H 0.00 0.13 6.03 -2.39 -0.01 0.12 16 15 C 0.12 4.73 5.60 86.38 0.48 5.21 16 16 N -0.69 -27.32 3.87 -463.07 -1.79 -29.11 16 17 C 0.52 21.90 7.78 87.66 0.68 22.58 16 18 O -0.60 -29.32 15.64 -3.01 -0.05 -29.37 16 19 C -0.12 -4.20 4.46 29.10 0.13 -4.07 16 20 C -0.12 -3.92 8.71 24.53 0.21 -3.71 16 21 C -0.12 -2.88 9.79 23.65 0.23 -2.65 16 22 C -0.07 -1.63 5.11 -20.11 -0.10 -1.73 16 23 C -0.08 -1.44 9.78 22.51 0.22 -1.22 16 24 C -0.15 -2.71 10.01 22.27 0.22 -2.49 16 25 C 0.08 1.71 7.30 22.43 0.16 1.87 16 26 F -0.15 -3.33 17.26 44.97 0.78 -2.55 16 27 C -0.16 -3.39 10.01 22.28 0.22 -3.17 16 28 C -0.10 -2.30 7.35 22.51 0.17 -2.13 16 29 H 0.26 16.17 5.47 -92.71 -0.51 15.67 16 30 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.09 2.58 7.82 -2.39 -0.02 2.56 16 36 H 0.06 2.32 7.50 -2.38 -0.02 2.30 16 37 H 0.09 2.87 8.10 -2.39 -0.02 2.85 16 38 H 0.41 14.91 8.14 -92.71 -0.75 14.15 16 39 H 0.12 3.49 4.96 -2.39 -0.01 3.47 16 40 H 0.09 3.54 5.41 -2.39 -0.01 3.52 16 41 H 0.11 3.81 8.01 -2.91 -0.02 3.79 16 42 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 43 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 44 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 45 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 46 H 0.13 3.28 6.41 -2.91 -0.02 3.26 16 Total: -1.00 -68.42 373.36 4.81 -63.61 By element: Atomic # 1 Polarization: 39.64 SS G_CDS: 0.44 Total: 40.08 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 4.93 Total: -5.26 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -3.23 Total: -114.39 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.05 Total: -29.37 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.78 Total: -2.55 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.94 Total: 47.89 kcal Total: -68.42 4.81 -63.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663503822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.303 kcal (2) G-P(sol) polarization free energy of solvation -68.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds