Wall clock time and date at job start Tue Mar 31 2020 16:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00232 * 2 1 4 4 H 1.48499 * 109.47155 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47033 * 299.99676 * 3 2 1 6 6 H 1.48495 * 109.47216 * 59.99663 * 3 2 1 7 7 C 1.38817 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00036 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99937 * 0.02562 * 7 2 1 10 10 C 1.47434 * 125.64974 * 345.71222 * 9 7 2 11 11 C 1.54900 * 104.83032 * 204.16201 * 10 9 7 12 12 C 1.55156 * 101.58500 * 322.98922 * 11 10 9 13 13 C 1.47023 * 125.64981 * 165.75352 * 9 7 2 14 14 H 1.08996 * 109.88233 * 59.33258 * 13 9 7 15 15 C 1.52999 * 109.87892 * 298.32363 * 13 9 7 16 16 N 1.46504 * 109.47087 * 174.60460 * 15 13 9 17 17 C 1.34770 * 120.00246 * 174.71477 * 16 15 13 18 18 O 1.21282 * 119.99955 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00167 * 179.97438 * 17 16 15 20 20 C 1.50700 * 109.47400 * 179.97438 * 19 17 16 21 21 C 1.32579 * 119.99858 * 124.99974 * 20 19 17 22 22 C 1.47800 * 119.99545 * 180.02562 * 21 20 19 23 23 C 1.39549 * 120.10845 * 179.97438 * 22 21 20 24 24 C 1.37934 * 119.87992 * 179.72568 * 23 22 21 25 25 C 1.38575 * 120.11482 * 0.27571 * 24 23 22 26 26 F 1.35098 * 119.88521 * 179.97438 * 25 24 23 27 27 C 1.38577 * 120.23300 * 359.97438 * 25 24 23 28 28 C 1.37930 * 120.11810 * 0.02562 * 27 25 24 29 29 H 0.96996 * 119.99487 * 0.02562 * 1 2 3 30 30 H 1.09001 * 110.36458 * 323.00454 * 10 9 7 31 31 H 1.09005 * 110.36428 * 85.32267 * 10 9 7 32 32 H 1.08996 * 111.00861 * 81.06985 * 11 10 9 33 33 H 1.09011 * 111.00387 * 204.91284 * 11 10 9 34 34 H 1.09003 * 110.72035 * 277.13788 * 12 11 10 35 35 H 1.09003 * 110.71958 * 153.86578 * 12 11 10 36 36 H 1.08995 * 109.47597 * 54.60488 * 15 13 9 37 37 H 1.08999 * 109.47554 * 294.59727 * 15 13 9 38 38 H 0.97003 * 119.99877 * 354.71002 * 16 15 13 39 39 H 1.09003 * 109.47305 * 59.99439 * 19 17 16 40 40 H 1.09002 * 109.46999 * 299.99564 * 19 17 16 41 41 H 1.08001 * 119.99848 * 305.00529 * 20 19 17 42 42 H 1.07998 * 119.99847 * 359.97438 * 21 20 19 43 43 H 1.07999 * 120.06568 * 359.97438 * 23 22 21 44 44 H 1.07995 * 119.94501 * 180.25604 * 24 23 22 45 45 H 1.08004 * 119.94158 * 179.97438 * 27 25 24 46 46 H 1.07998 * 120.05965 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1096 -2.5516 0.2957 11 6 -0.2516 -4.0184 0.7729 12 6 0.7655 -4.7450 -0.1463 13 6 1.9000 -3.7092 -0.2930 14 1 2.7006 -3.9304 0.4128 15 6 2.4452 -3.7336 -1.7223 16 7 3.1289 -5.0068 -1.9625 17 6 3.5986 -5.2981 -3.1917 18 8 3.4549 -4.5064 -4.0991 19 6 4.3024 -6.6076 -3.4387 20 6 4.7251 -6.6862 -4.8830 21 6 5.9943 -6.9150 -5.1907 22 6 6.4089 -6.9915 -6.6073 23 6 7.7442 -7.2316 -6.9339 24 6 8.1250 -7.3077 -8.2575 25 6 7.1852 -7.1405 -9.2620 26 9 7.5633 -7.2154 -10.5568 27 6 5.8588 -6.8966 -8.9431 28 6 5.4675 -6.8186 -7.6228 29 1 -0.4849 0.8401 -0.0004 30 1 -0.4153 -1.8646 1.0848 31 1 -0.7031 -2.3861 -0.6035 32 1 0.0294 -4.1172 1.8214 33 1 -1.2634 -4.3878 0.6049 34 1 0.3189 -4.9678 -1.1153 35 1 1.1330 -5.6548 0.3285 36 1 3.1490 -2.9123 -1.8568 37 1 1.6212 -3.6251 -2.4275 38 1 3.2436 -5.6402 -1.2369 39 1 3.6258 -7.4320 -3.2131 40 1 5.1819 -6.6738 -2.7982 41 1 3.9942 -6.5561 -5.6674 42 1 6.7252 -7.0446 -4.4063 43 1 8.4776 -7.3616 -6.1518 44 1 9.1573 -7.4976 -8.5113 45 1 5.1303 -6.7666 -9.7298 46 1 4.4337 -6.6282 -7.3753 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663503823.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:44 Heat of formation + Delta-G solvation = -25.746373 kcal Electronic energy + Delta-G solvation = -26641.964393 eV Core-core repulsion = 22639.504391 eV Total energy + Delta-G solvation = -4002.460002 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.17034 -39.68334 -39.25696 -37.67011 -35.09626 -34.22618 -32.51284 -31.51972 -31.24858 -29.68872 -28.80834 -27.08480 -24.85189 -23.90180 -23.53182 -22.51228 -20.57006 -20.14634 -19.76269 -19.36768 -18.07906 -17.24593 -16.68811 -16.49203 -16.11722 -15.86525 -15.81135 -15.18993 -14.91915 -14.64875 -14.18837 -13.92543 -13.90657 -13.88354 -13.40138 -13.26722 -13.01376 -12.89521 -12.65018 -12.13519 -11.97698 -11.90516 -11.71748 -11.59106 -11.34087 -11.14444 -10.96229 -10.82528 -10.34589 -10.27351 -10.10980 -9.96983 -9.87373 -9.75471 -9.58925 -9.46697 -8.70225 -8.59662 -8.28341 -6.86829 -5.79307 -3.15946 0.47825 0.91838 2.10765 2.83844 3.36632 3.39972 3.44591 3.46310 3.55403 3.94927 4.30559 4.37501 4.46654 4.53897 4.79357 4.81780 4.91142 5.01718 5.17343 5.25759 5.31279 5.34579 5.38045 5.49047 5.56796 5.59821 5.68346 5.78176 5.78589 5.91264 5.96279 6.03207 6.10783 6.21319 6.33589 6.42653 6.48530 6.52218 6.58095 6.60355 6.68498 6.78557 7.03329 7.49291 7.58246 7.76201 7.76915 8.22914 8.46416 9.14866 9.75456 10.42461 11.32647 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015942 B = 0.001927 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.936414 B =14529.347045 C =15598.586423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.002 4.002 3 Si 0.911 3.089 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.233 4.233 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.125 4.125 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.108 3.892 16 N -0.724 5.724 17 C 0.508 3.492 18 O -0.540 6.540 19 C -0.115 4.115 20 C -0.104 4.104 21 C -0.132 4.132 22 C -0.055 4.055 23 C -0.084 4.084 24 C -0.152 4.152 25 C 0.090 3.910 26 F -0.142 7.142 27 C -0.149 4.149 28 C -0.087 4.087 29 H 0.253 0.747 30 H 0.073 0.927 31 H 0.026 0.974 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.396 0.604 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.070 -19.905 -9.390 24.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.362 4.362 8 H 0.094 0.906 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.188 4.188 12 C -0.163 4.163 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.017 4.017 16 N -0.375 5.375 17 C 0.293 3.707 18 O -0.417 6.417 19 C -0.155 4.155 20 C -0.122 4.122 21 C -0.150 4.150 22 C -0.055 4.055 23 C -0.103 4.103 24 C -0.171 4.171 25 C 0.071 3.929 26 F -0.121 7.121 27 C -0.168 4.168 28 C -0.105 4.105 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.229 0.771 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.152 0.848 44 H 0.153 0.847 45 H 0.154 0.846 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 10.902 -19.047 -10.069 24.146 hybrid contribution 0.572 0.663 -0.018 0.876 sum 11.474 -18.383 -10.087 23.903 Atomic orbital electron populations 1.69946 1.05021 1.25224 1.55921 1.24921 0.95698 0.97904 1.01401 0.86071 0.78924 0.83655 0.77274 1.20371 1.21580 1.21692 1.19025 0.90415 0.82172 1.44569 0.90599 1.44499 1.06155 1.00918 1.79770 1.21466 0.84752 0.90231 0.98863 1.23011 0.97542 0.99624 0.98602 1.22604 0.97075 0.96942 0.99711 1.21129 0.94465 0.88070 0.92001 0.94550 1.22243 0.96503 0.83565 0.99372 1.46164 1.58785 1.21745 1.10814 1.20452 0.79170 0.88176 0.82924 1.90728 1.57412 1.50371 1.43234 1.20797 1.02060 0.96852 0.95810 1.22991 0.96704 0.96030 0.96467 1.21546 0.96327 1.03608 0.93481 1.19107 0.93278 0.99686 0.93469 1.21123 0.95402 0.98192 0.95535 1.21074 0.99730 1.03849 0.92462 1.17816 0.93618 1.03245 0.78256 1.91495 1.91985 1.93847 1.34759 1.21106 0.94590 1.03192 0.97905 1.21263 1.00228 0.97720 0.91240 0.93628 0.90876 0.95635 0.92300 0.92343 0.91856 0.92404 0.91510 0.91703 0.77123 0.87660 0.88381 0.86096 0.86042 0.84770 0.84715 0.84611 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.49 10.56 55.49 0.59 -25.90 16 2 C 0.00 -0.06 5.47 -17.43 -0.10 -0.15 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 7 C -0.23 -6.33 9.71 -15.06 -0.15 -6.48 16 8 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 9 N -0.59 -14.38 3.13 -162.57 -0.51 -14.89 16 10 C 0.17 4.03 5.42 -2.53 -0.01 4.02 16 11 C -0.15 -2.66 7.08 -24.59 -0.17 -2.83 16 12 C -0.13 -2.00 6.25 -24.90 -0.16 -2.16 16 13 C 0.15 2.89 3.18 -66.95 -0.21 2.68 16 14 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 15 C 0.11 2.02 5.11 -4.04 -0.02 2.00 16 16 N -0.72 -9.98 5.37 -60.29 -0.32 -10.30 16 17 C 0.51 7.16 7.82 -10.99 -0.09 7.08 16 18 O -0.54 -10.28 16.03 5.56 0.09 -10.19 16 19 C -0.12 -1.02 6.15 -29.03 -0.18 -1.20 16 20 C -0.10 -1.01 8.18 -36.21 -0.30 -1.30 16 21 C -0.13 -1.16 9.52 -37.58 -0.36 -1.52 16 22 C -0.06 -0.51 5.87 -105.01 -0.62 -1.13 16 23 C -0.08 -0.68 9.78 -39.20 -0.38 -1.07 16 24 C -0.15 -1.28 10.01 -39.57 -0.40 -1.67 16 25 C 0.09 0.87 7.30 -39.33 -0.29 0.58 16 26 F -0.14 -1.48 17.26 2.25 0.04 -1.44 16 27 C -0.15 -1.37 10.01 -39.57 -0.40 -1.77 16 28 C -0.09 -0.82 9.40 -39.21 -0.37 -1.18 16 29 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 31 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 34 H 0.06 1.01 7.76 -51.93 -0.40 0.60 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.45 7.84 -51.93 -0.41 1.04 16 37 H 0.06 1.37 8.00 -51.93 -0.42 0.95 16 38 H 0.40 4.08 8.43 -40.82 -0.34 3.74 16 39 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 0.66 7.81 -51.93 -0.41 0.26 16 41 H 0.12 1.24 6.03 -52.49 -0.32 0.93 16 42 H 0.12 0.85 7.87 -52.49 -0.41 0.43 16 43 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 45 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 46 H 0.14 1.17 6.16 -52.49 -0.32 0.85 16 LS Contribution 385.38 15.07 5.81 5.81 Total: -1.00 -32.94 385.38 -10.25 -43.19 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.73 Total: 2.83 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -4.18 Total: -6.11 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.25 Total: -51.09 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.94 -10.25 -43.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663503823.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.443 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds