Wall clock time and date at job start Tue Mar 31 2020 16:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00232 * 2 1 4 4 H 1.48499 * 109.47155 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47033 * 299.99676 * 3 2 1 6 6 H 1.48495 * 109.47216 * 59.99663 * 3 2 1 7 7 C 1.38817 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00036 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99937 * 0.02562 * 7 2 1 10 10 C 1.47434 * 125.64974 * 345.71222 * 9 7 2 11 11 C 1.54900 * 104.83032 * 204.16201 * 10 9 7 12 12 C 1.55156 * 101.58500 * 322.98922 * 11 10 9 13 13 C 1.47023 * 125.64981 * 165.75352 * 9 7 2 14 14 H 1.08996 * 109.88233 * 59.33258 * 13 9 7 15 15 C 1.52999 * 109.87892 * 298.32363 * 13 9 7 16 16 N 1.46504 * 109.47087 * 174.60460 * 15 13 9 17 17 C 1.34770 * 120.00246 * 174.71477 * 16 15 13 18 18 O 1.21282 * 119.99955 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00167 * 179.97438 * 17 16 15 20 20 C 1.50700 * 109.47400 * 179.97438 * 19 17 16 21 21 C 1.32579 * 119.99858 * 124.99974 * 20 19 17 22 22 C 1.47800 * 119.99545 * 180.02562 * 21 20 19 23 23 C 1.39549 * 120.10845 * 179.97438 * 22 21 20 24 24 C 1.37934 * 119.87992 * 179.72568 * 23 22 21 25 25 C 1.38575 * 120.11482 * 0.27571 * 24 23 22 26 26 F 1.35098 * 119.88521 * 179.97438 * 25 24 23 27 27 C 1.38577 * 120.23300 * 359.97438 * 25 24 23 28 28 C 1.37930 * 120.11810 * 0.02562 * 27 25 24 29 29 H 0.96996 * 119.99487 * 0.02562 * 1 2 3 30 30 H 1.09001 * 110.36458 * 323.00454 * 10 9 7 31 31 H 1.09005 * 110.36428 * 85.32267 * 10 9 7 32 32 H 1.08996 * 111.00861 * 81.06985 * 11 10 9 33 33 H 1.09011 * 111.00387 * 204.91284 * 11 10 9 34 34 H 1.09003 * 110.72035 * 277.13788 * 12 11 10 35 35 H 1.09003 * 110.71958 * 153.86578 * 12 11 10 36 36 H 1.08995 * 109.47597 * 54.60488 * 15 13 9 37 37 H 1.08999 * 109.47554 * 294.59727 * 15 13 9 38 38 H 0.97003 * 119.99877 * 354.71002 * 16 15 13 39 39 H 1.09003 * 109.47305 * 59.99439 * 19 17 16 40 40 H 1.09002 * 109.46999 * 299.99564 * 19 17 16 41 41 H 1.08001 * 119.99848 * 305.00529 * 20 19 17 42 42 H 1.07998 * 119.99847 * 359.97438 * 21 20 19 43 43 H 1.07999 * 120.06568 * 359.97438 * 23 22 21 44 44 H 1.07995 * 119.94501 * 180.25604 * 24 23 22 45 45 H 1.08004 * 119.94158 * 179.97438 * 27 25 24 46 46 H 1.07998 * 120.05965 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1096 -2.5516 0.2957 11 6 -0.2516 -4.0184 0.7729 12 6 0.7655 -4.7450 -0.1463 13 6 1.9000 -3.7092 -0.2930 14 1 2.7006 -3.9304 0.4128 15 6 2.4452 -3.7336 -1.7223 16 7 3.1289 -5.0068 -1.9625 17 6 3.5986 -5.2981 -3.1917 18 8 3.4549 -4.5064 -4.0991 19 6 4.3024 -6.6076 -3.4387 20 6 4.7251 -6.6862 -4.8830 21 6 5.9943 -6.9150 -5.1907 22 6 6.4089 -6.9915 -6.6073 23 6 7.7442 -7.2316 -6.9339 24 6 8.1250 -7.3077 -8.2575 25 6 7.1852 -7.1405 -9.2620 26 9 7.5633 -7.2154 -10.5568 27 6 5.8588 -6.8966 -8.9431 28 6 5.4675 -6.8186 -7.6228 29 1 -0.4849 0.8401 -0.0004 30 1 -0.4153 -1.8646 1.0848 31 1 -0.7031 -2.3861 -0.6035 32 1 0.0294 -4.1172 1.8214 33 1 -1.2634 -4.3878 0.6049 34 1 0.3189 -4.9678 -1.1153 35 1 1.1330 -5.6548 0.3285 36 1 3.1490 -2.9123 -1.8568 37 1 1.6212 -3.6251 -2.4275 38 1 3.2436 -5.6402 -1.2369 39 1 3.6258 -7.4320 -3.2131 40 1 5.1819 -6.6738 -2.7982 41 1 3.9942 -6.5561 -5.6674 42 1 6.7252 -7.0446 -4.4063 43 1 8.4776 -7.3616 -6.1518 44 1 9.1573 -7.4976 -8.5113 45 1 5.1303 -6.7666 -9.7298 46 1 4.4337 -6.6282 -7.3753 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663503823.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:43 Heat of formation + Delta-G solvation = -45.205519 kcal Electronic energy + Delta-G solvation = -26642.808205 eV Core-core repulsion = 22639.504391 eV Total energy + Delta-G solvation = -4003.303814 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.92619 -40.80888 -40.02090 -39.24720 -35.91940 -35.57777 -34.40132 -32.17885 -32.09051 -31.36202 -30.30858 -27.99331 -26.65054 -25.38130 -24.27719 -23.29388 -22.04356 -21.48296 -21.13220 -20.29143 -18.90447 -18.72662 -17.91227 -17.48701 -17.14082 -16.94623 -16.61974 -16.59926 -16.30077 -15.80721 -15.64727 -15.34713 -14.82616 -14.55142 -14.51100 -14.46265 -14.01295 -13.74967 -13.68179 -13.61582 -13.51874 -13.32473 -12.98469 -12.86328 -12.69940 -12.57036 -12.30961 -11.99073 -11.87100 -11.79140 -11.70882 -11.47810 -11.38728 -11.13132 -10.76454 -10.69430 -10.12123 -10.01147 -8.98721 -8.85834 -7.89532 -5.26656 -0.22239 0.26477 1.40636 1.42909 1.44806 1.53937 1.73989 2.31758 2.50961 2.79575 3.26510 3.30466 3.64238 3.70622 3.73592 3.91915 3.93795 4.01233 4.02932 4.18092 4.26244 4.28599 4.37021 4.46561 4.51671 4.57818 4.64159 4.75347 4.76339 4.95926 4.99041 5.00863 5.02562 5.13937 5.16832 5.23227 5.24601 5.31347 5.41811 5.47443 5.61327 5.65370 5.67183 5.78241 5.82991 5.93139 6.22825 6.69066 7.08478 7.39187 7.76145 8.41650 9.21540 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015942 B = 0.001927 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.936414 B =14529.347045 C =15598.586423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.063 4.063 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.297 1.297 6 H -0.288 1.288 7 C -0.236 4.236 8 H 0.077 0.923 9 N -0.612 5.612 10 C 0.172 3.828 11 C -0.134 4.134 12 C -0.111 4.111 13 C 0.148 3.852 14 H 0.054 0.946 15 C 0.129 3.871 16 N -0.708 5.708 17 C 0.503 3.497 18 O -0.597 6.597 19 C -0.098 4.098 20 C -0.126 4.126 21 C -0.122 4.122 22 C -0.071 4.071 23 C -0.081 4.081 24 C -0.153 4.153 25 C 0.071 3.929 26 F -0.150 7.150 27 C -0.159 4.159 28 C -0.100 4.100 29 H 0.247 0.753 30 H 0.036 0.964 31 H -0.011 1.011 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.028 0.972 37 H 0.032 0.968 38 H 0.418 0.582 39 H 0.139 0.861 40 H 0.131 0.869 41 H 0.105 0.895 42 H 0.148 0.852 43 H 0.163 0.837 44 H 0.155 0.845 45 H 0.144 0.856 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.216 -22.946 -8.103 27.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.256 4.256 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.224 1.224 6 H -0.215 1.215 7 C -0.366 4.366 8 H 0.095 0.905 9 N -0.337 5.337 10 C 0.047 3.953 11 C -0.173 4.173 12 C -0.148 4.148 13 C 0.040 3.960 14 H 0.072 0.928 15 C 0.002 3.998 16 N -0.361 5.361 17 C 0.291 3.709 18 O -0.478 6.478 19 C -0.137 4.137 20 C -0.144 4.144 21 C -0.139 4.139 22 C -0.071 4.071 23 C -0.099 4.099 24 C -0.172 4.172 25 C 0.052 3.948 26 F -0.129 7.129 27 C -0.178 4.178 28 C -0.118 4.118 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.007 0.993 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.127 0.873 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.256 0.744 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.123 0.877 42 H 0.166 0.834 43 H 0.181 0.819 44 H 0.173 0.827 45 H 0.161 0.839 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 13.082 -22.162 -8.756 27.184 hybrid contribution -0.046 1.558 -0.476 1.629 sum 13.036 -20.605 -9.232 26.071 Atomic orbital electron populations 1.70148 1.06284 1.25263 1.57757 1.25693 0.96537 1.01042 1.02365 0.85123 0.78373 0.79893 0.76675 1.19052 1.22386 1.21493 1.19336 0.90751 0.83622 1.42843 0.90485 1.44774 1.06590 1.02166 1.80143 1.21276 0.84120 0.93653 0.96223 1.22877 0.99689 0.95215 0.99492 1.22595 0.94994 0.97431 0.99823 1.21364 0.96088 0.86536 0.91965 0.92796 1.21622 0.94795 0.84973 0.98431 1.45881 1.58074 1.20246 1.11933 1.21489 0.78157 0.89457 0.81771 1.90714 1.59475 1.52663 1.44961 1.20800 1.03247 0.93989 0.95702 1.23023 0.97005 0.97592 0.96817 1.21776 0.96381 1.02080 0.93706 1.19378 0.93917 0.99970 0.93869 1.21452 0.95407 0.96922 0.96095 1.21366 1.00488 1.03003 0.92342 1.18085 0.94205 1.04210 0.78326 1.91470 1.92049 1.94026 1.35358 1.21259 0.94935 1.03327 0.98254 1.21402 1.00627 0.98213 0.91581 0.94366 0.94596 0.99284 0.91024 0.90024 0.91802 0.87349 0.95339 0.94928 0.74441 0.84353 0.85089 0.87737 0.83449 0.81923 0.82696 0.83866 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.35 10.56 21.65 0.23 -57.12 16 2 C -0.06 -3.60 5.47 84.86 0.46 -3.14 16 3 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.24 -13.11 9.71 84.04 0.82 -12.29 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 9 N -0.61 -30.35 3.13 -668.25 -2.09 -32.43 16 10 C 0.17 8.31 5.42 86.85 0.47 8.78 16 11 C -0.13 -4.49 7.08 31.98 0.23 -4.27 16 12 C -0.11 -3.16 6.25 31.78 0.20 -2.96 16 13 C 0.15 5.41 3.18 45.34 0.14 5.56 16 14 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 15 C 0.13 4.81 5.11 86.38 0.44 5.25 16 16 N -0.71 -17.91 5.37 -463.06 -2.49 -20.40 16 17 C 0.50 13.34 7.82 87.66 0.69 14.02 16 18 O -0.60 -23.04 16.03 -3.04 -0.05 -23.09 16 19 C -0.10 -1.38 6.15 29.10 0.18 -1.20 16 20 C -0.13 -2.20 8.18 24.53 0.20 -1.99 16 21 C -0.12 -1.81 9.52 23.65 0.23 -1.59 16 22 C -0.07 -1.21 5.87 -20.12 -0.12 -1.33 16 23 C -0.08 -1.11 9.78 22.51 0.22 -0.89 16 24 C -0.15 -2.31 10.01 22.28 0.22 -2.08 16 25 C 0.07 1.34 7.30 22.43 0.16 1.50 16 26 F -0.15 -3.10 17.26 44.97 0.78 -2.32 16 27 C -0.16 -2.95 10.01 22.28 0.22 -2.73 16 28 C -0.10 -1.88 9.40 22.51 0.21 -1.67 16 29 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 30 H 0.04 1.96 6.90 -2.39 -0.02 1.95 16 31 H -0.01 -0.59 8.07 -2.38 -0.02 -0.61 16 32 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 34 H 0.06 1.85 7.76 -2.39 -0.02 1.83 16 35 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.03 1.27 7.84 -2.39 -0.02 1.25 16 37 H 0.03 1.42 8.00 -2.39 -0.02 1.40 16 38 H 0.42 6.80 8.43 -92.71 -0.78 6.02 16 39 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.13 1.05 7.81 -2.39 -0.02 1.03 16 41 H 0.10 2.14 6.03 -2.91 -0.02 2.12 16 42 H 0.15 1.38 7.87 -2.91 -0.02 1.36 16 43 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 44 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 45 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 46 H 0.14 2.45 6.16 -2.91 -0.02 2.43 16 Total: -1.00 -78.14 385.38 3.59 -74.55 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.21 Total: 13.28 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 4.98 Total: -1.03 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -4.35 Total: -109.96 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.05 Total: -23.09 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.78 Total: -2.32 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -78.14 3.59 -74.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663503823.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.343 kcal (2) G-P(sol) polarization free energy of solvation -78.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds