Wall clock time and date at job start Tue Mar 31 2020 17:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00205 * 2 1 4 4 H 1.48500 * 109.47027 * 240.00053 * 3 2 1 5 5 H 1.48500 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47165 * 120.00242 * 3 2 1 7 7 C 1.38813 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00368 * 196.91013 * 7 2 1 9 9 N 1.36942 * 119.99835 * 16.90564 * 7 2 1 10 10 C 1.47154 * 120.97999 * 26.23236 * 9 7 2 11 11 C 1.53294 * 108.38373 * 129.47445 * 10 9 7 12 12 O 1.42962 * 109.22249 * 52.30678 * 11 10 9 13 13 C 1.42967 * 114.16269 * 297.41458 * 12 11 10 14 14 H 1.09000 * 109.51178 * 302.60916 * 13 12 11 15 15 C 1.53001 * 109.51048 * 182.50584 * 13 12 11 16 16 N 1.46492 * 109.47090 * 65.10549 * 15 13 12 17 17 C 1.34774 * 120.00067 * 180.02562 * 16 15 13 18 18 O 1.21284 * 120.00127 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00419 * 179.97438 * 17 16 15 20 20 C 1.53001 * 109.47442 * 179.97438 * 19 17 16 21 21 H 1.09001 * 110.67038 * 308.23068 * 20 19 17 22 22 C 1.54892 * 110.75716 * 185.00088 * 20 19 17 23 23 C 1.54268 * 104.19320 * 203.74280 * 22 20 19 24 24 C 1.53871 * 106.59826 * 23.60878 * 23 22 20 25 25 F 1.39900 * 110.03149 * 119.28735 * 24 23 22 26 26 F 1.39907 * 110.02781 * 240.71483 * 24 23 22 27 27 C 1.54261 * 106.60407 * 359.97438 * 24 23 22 28 28 C 1.47167 * 120.94668 * 206.20770 * 9 7 2 29 29 H 0.97004 * 119.99563 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.68114 * 9.75285 * 10 9 7 31 31 H 1.09001 * 109.71259 * 249.21926 * 10 9 7 32 32 H 1.08989 * 109.51653 * 292.37731 * 11 10 9 33 33 H 1.09001 * 109.51204 * 172.22192 * 11 10 9 34 34 H 1.08997 * 109.46905 * 305.09973 * 15 13 12 35 35 H 1.09004 * 109.46701 * 185.10319 * 15 13 12 36 36 H 0.96997 * 120.00182 * 359.97438 * 16 15 13 37 37 H 1.09002 * 109.47203 * 59.99249 * 19 17 16 38 38 H 1.09006 * 109.46763 * 299.99893 * 19 17 16 39 39 H 1.08997 * 110.48634 * 85.05866 * 22 20 19 40 40 H 1.08999 * 110.48423 * 322.41841 * 22 20 19 41 41 H 1.09004 * 110.02670 * 264.31976 * 23 22 20 42 42 H 1.09000 * 110.06948 * 142.91864 * 23 22 20 43 43 H 1.09002 * 110.48558 * 95.06849 * 27 24 23 44 44 H 1.08994 * 110.49372 * 217.71837 * 27 24 23 45 45 H 1.09003 * 109.64462 * 110.77422 * 28 9 7 46 46 H 1.08998 * 109.72313 * 350.22161 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2223 0.2726 9 7 1.3699 -2.3626 -0.3438 10 6 0.1973 -2.3457 -1.2327 11 6 0.4243 -3.3681 -2.3521 12 8 0.7648 -4.6307 -1.7744 13 6 1.9812 -4.6216 -1.0232 14 1 2.8004 -4.2892 -1.6609 15 6 2.2744 -6.0322 -0.5083 16 7 2.5293 -6.9230 -1.6430 17 6 2.8114 -8.2234 -1.4287 18 8 2.8547 -8.6560 -0.2964 19 6 3.0731 -9.1400 -2.5959 20 6 3.3663 -10.5506 -2.0810 21 1 4.1473 -10.5281 -1.3209 22 6 3.7625 -11.4895 -3.2475 23 6 3.4287 -12.9024 -2.7259 24 6 2.3581 -12.7266 -1.6348 25 9 1.1897 -13.4061 -1.9959 26 9 2.8361 -13.2104 -0.4121 27 6 2.0791 -11.2130 -1.5308 28 6 1.8352 -3.6631 0.1641 29 1 -0.4850 0.8401 -0.0004 30 1 0.0769 -1.3513 -1.6626 31 1 -0.6961 -2.6120 -0.6678 32 1 1.2376 -3.0303 -2.9942 33 1 -0.4869 -3.4712 -2.9412 34 1 1.4167 -6.3985 0.0558 35 1 3.1513 -6.0078 0.1387 36 1 2.4943 -6.5772 -2.5485 37 1 3.9308 -8.7739 -3.1602 38 1 2.1960 -9.1640 -3.2428 39 1 4.8279 -11.4035 -3.4613 40 1 3.1745 -11.2622 -4.1366 41 1 4.3207 -13.3646 -2.3029 42 1 3.0383 -13.5178 -3.5364 43 1 1.2192 -10.9407 -2.1427 44 1 1.9158 -10.9255 -0.4922 45 1 1.1075 -4.0621 0.8708 46 1 2.7990 -3.5415 0.6584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753659064.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:42 Heat of formation + Delta-G solvation = -176.546478 kcal Electronic energy + Delta-G solvation = -28720.964796 eV Core-core repulsion = 24281.196386 eV Total energy + Delta-G solvation = -4439.768410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.12088 -47.19635 -40.01490 -38.61342 -37.60618 -34.92837 -34.31758 -31.99727 -31.38259 -30.58107 -28.98078 -27.67946 -26.40260 -24.92525 -23.22159 -21.94853 -21.32642 -21.06578 -20.33504 -19.57946 -17.90931 -17.27280 -17.03949 -16.78961 -16.38422 -16.07951 -15.87104 -15.24509 -15.02517 -14.77497 -14.56024 -14.42671 -14.19288 -13.94449 -13.75198 -13.53884 -13.38777 -13.26938 -13.02855 -12.88651 -12.69931 -12.27596 -12.10921 -11.93966 -11.76823 -11.54940 -11.42172 -11.16185 -11.06988 -10.88988 -10.87953 -10.77516 -10.45794 -10.33155 -10.03268 -9.90508 -9.68322 -9.12524 -9.01594 -8.58627 -6.80670 -5.88798 -3.32680 2.61216 3.12929 3.31925 3.37929 3.38594 3.48000 3.61415 3.86329 4.04494 4.18095 4.38992 4.53418 4.62564 4.68531 4.79128 4.87161 5.00297 5.08239 5.18825 5.23517 5.28551 5.29928 5.36152 5.42805 5.45567 5.47956 5.60595 5.74873 5.79823 5.81712 5.92615 5.98678 6.10155 6.23937 6.31505 6.43396 6.48582 6.70459 7.05075 7.46414 7.51024 7.65775 7.79751 8.21010 8.28680 9.06630 9.69278 10.25907 11.19338 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.033451 B = 0.001922 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.838455 B =14561.989224 C =14655.448394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.065 3.935 14 H 0.058 0.942 15 C 0.130 3.870 16 N -0.721 5.721 17 C 0.508 3.492 18 O -0.543 6.543 19 C -0.133 4.133 20 C -0.074 4.074 21 H 0.096 0.904 22 C -0.118 4.118 23 C -0.163 4.163 24 C 0.279 3.721 25 F -0.202 7.202 26 F -0.198 7.198 27 C -0.156 4.156 28 C 0.121 3.879 29 H 0.256 0.744 30 H 0.094 0.906 31 H 0.028 0.972 32 H 0.041 0.959 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.403 0.597 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.030 0.970 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.748 -21.850 -10.272 25.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.005 3.995 14 H 0.076 0.924 15 C 0.006 3.994 16 N -0.372 5.372 17 C 0.294 3.706 18 O -0.421 6.421 19 C -0.173 4.173 20 C -0.093 4.093 21 H 0.114 0.886 22 C -0.156 4.156 23 C -0.201 4.201 24 C 0.243 3.757 25 F -0.183 7.183 26 F -0.179 7.179 27 C -0.194 4.194 28 C -0.006 4.006 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.237 0.763 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.122 0.878 45 H 0.048 0.952 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.524 -22.171 -9.420 24.957 hybrid contribution 0.304 1.251 -0.272 1.315 sum 6.828 -20.920 -9.692 24.046 Atomic orbital electron populations 1.70024 1.05283 1.25836 1.53523 1.25057 0.95362 0.98519 1.00697 0.86309 0.78870 0.83039 0.78190 1.20974 1.21530 1.20760 1.19153 0.92626 0.84459 1.42404 0.91369 1.44068 1.33561 1.01003 1.53150 1.21445 0.89131 0.98318 0.89759 1.23324 0.99004 0.84894 0.96578 1.87786 1.41233 1.32633 1.69289 1.22801 0.87489 0.93897 0.95292 0.92397 1.21413 1.01603 0.87913 0.88486 1.45989 1.71207 1.09187 1.10803 1.20607 0.76646 0.82523 0.90851 1.90707 1.51563 1.75563 1.24244 1.21684 1.04298 0.94116 0.97234 1.21837 0.97446 0.92493 0.97505 0.88565 1.22437 1.02579 0.92360 0.98202 1.23159 0.98823 1.00054 0.98086 1.21890 0.81621 0.90984 0.81233 1.93007 1.51090 1.82542 1.91690 1.93025 1.88285 1.89882 1.46748 1.23446 0.99894 0.90101 1.05955 1.21446 0.98946 0.87239 0.92956 0.93398 0.88758 0.95360 0.94107 0.90036 0.90706 0.90175 0.76295 0.88263 0.88463 0.89979 0.90265 0.88762 0.88777 0.88685 0.87752 0.95243 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.63 11.14 55.49 0.62 -25.02 16 2 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 3 Si 0.91 21.11 29.59 -169.99 -5.03 16.08 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.26 -6.87 9.65 -15.06 -0.15 -7.02 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.59 -14.57 3.05 -171.82 -0.52 -15.09 16 10 C 0.14 3.24 5.45 -3.53 -0.02 3.22 16 11 C 0.04 0.73 6.98 37.31 0.26 0.99 16 12 O -0.39 -6.98 10.33 -35.23 -0.36 -7.34 16 13 C 0.07 1.08 2.81 -26.58 -0.07 1.01 16 14 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 15 C 0.13 1.85 5.34 -4.05 -0.02 1.83 16 16 N -0.72 -8.39 5.50 -60.30 -0.33 -8.73 16 17 C 0.51 5.84 7.66 -10.99 -0.08 5.76 16 18 O -0.54 -8.29 14.84 5.55 0.08 -8.20 16 19 C -0.13 -0.94 5.20 -27.88 -0.14 -1.09 16 20 C -0.07 -0.56 2.45 -88.64 -0.22 -0.77 16 21 H 0.10 0.86 7.88 -51.93 -0.41 0.45 16 22 C -0.12 -0.60 6.28 -25.07 -0.16 -0.76 16 23 C -0.16 -1.03 6.50 -25.61 -0.17 -1.19 16 24 C 0.28 2.62 2.57 -25.62 -0.07 2.56 16 25 F -0.20 -2.19 17.04 2.25 0.04 -2.15 16 26 F -0.20 -2.30 17.04 2.25 0.04 -2.26 16 27 C -0.16 -1.44 5.33 -25.09 -0.13 -1.57 16 28 C 0.12 2.47 6.02 -3.53 -0.02 2.45 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.09 2.41 6.14 -51.93 -0.32 2.09 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.73 8.14 -51.94 -0.42 0.31 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.40 3.93 8.47 -40.82 -0.35 3.59 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.54 7.99 -51.93 -0.41 0.13 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.32 8.05 -51.93 -0.42 -0.10 16 41 H 0.09 0.54 8.02 -51.93 -0.42 0.12 16 42 H 0.09 0.50 8.02 -51.93 -0.42 0.08 16 43 H 0.09 0.79 7.91 -51.93 -0.41 0.38 16 44 H 0.10 1.21 7.35 -51.93 -0.38 0.82 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.06 1.24 7.96 -51.93 -0.41 0.82 16 LS Contribution 374.31 15.07 5.64 5.64 Total: -1.00 -31.99 374.31 -8.21 -40.20 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.30 Total: 1.47 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -1.08 Total: 5.39 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.24 Total: -48.83 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.28 Total: -15.55 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.08 Total: -4.41 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.99 -8.21 -40.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753659064.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.345 kcal (2) G-P(sol) polarization free energy of solvation -31.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds