Wall clock time and date at job start Tue Mar 31 2020 17:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37854 * 119.94056 * 2 1 4 4 C 1.39629 * 119.88148 * 180.02562 * 3 2 1 5 5 C 1.47725 * 120.12132 * 179.97438 * 4 3 2 6 6 O 1.21568 * 119.99923 * 0.02562 * 5 4 3 7 7 N 1.34771 * 119.99872 * 179.97438 * 5 4 3 8 8 C 1.46501 * 119.99876 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.32293 * 34.99942 * 8 7 5 10 10 C 1.53030 * 109.32584 * 154.64497 * 8 7 5 11 11 C 1.53601 * 109.02367 * 175.65579 * 10 8 7 12 12 H 1.09005 * 113.05135 * 168.01749 * 11 10 8 13 13 C 1.55417 * 106.33031 * 293.72731 * 11 10 8 14 14 C 1.55169 * 100.35602 * 73.36062 * 13 11 10 15 15 H 1.09005 * 113.05478 * 162.97996 * 14 13 11 16 16 C 1.52994 * 109.32383 * 275.35802 * 8 7 5 17 17 N 1.47790 * 104.25191 * 40.55040 * 14 13 11 18 18 C 1.36940 * 125.85995 * 153.54479 * 17 14 13 19 19 H 1.08000 * 119.99393 * 353.88053 * 18 17 14 20 20 C 1.38809 * 120.00113 * 173.88979 * 18 17 14 21 21 N 1.31618 * 120.00233 * 6.77029 * 20 18 17 22 22 Si 1.86802 * 119.99711 * 186.77954 * 20 18 17 23 23 H 1.48492 * 109.47550 * 94.98286 * 22 20 18 24 24 H 1.48501 * 109.46834 * 214.98347 * 22 20 18 25 25 H 1.48504 * 109.47049 * 334.97796 * 22 20 18 26 26 C 1.47080 * 108.28687 * 333.53691 * 17 14 13 27 27 C 1.39676 * 119.76288 * 0.25195 * 4 3 2 28 28 C 1.37818 * 119.87442 * 359.47225 * 27 4 3 29 29 C 1.38634 * 119.93915 * 180.02562 * 2 1 3 30 30 F 1.35102 * 119.88291 * 359.96814 * 29 2 1 31 31 H 1.09003 * 109.47305 * 90.00043 * 1 2 3 32 32 H 1.09002 * 109.47124 * 209.99723 * 1 2 3 33 33 H 1.09004 * 109.47300 * 329.99983 * 1 2 3 34 34 H 1.08005 * 120.05953 * 0.02562 * 3 2 1 35 35 H 0.97003 * 120.00548 * 0.02562 * 7 5 4 36 36 H 1.08997 * 109.57484 * 295.30004 * 10 8 7 37 37 H 1.09000 * 109.57946 * 55.69675 * 10 8 7 38 38 H 1.09004 * 111.24037 * 315.58374 * 13 11 10 39 39 H 1.09007 * 111.23485 * 191.13652 * 13 11 10 40 40 H 1.08996 * 109.53358 * 304.70485 * 16 8 7 41 41 H 1.08995 * 109.53195 * 64.93413 * 16 8 7 42 42 H 0.97003 * 119.99911 * 180.02562 * 21 20 18 43 43 H 1.09005 * 109.97631 * 120.45929 * 26 17 14 44 44 H 1.09003 * 109.97835 * 241.74512 * 26 17 14 45 45 H 1.07992 * 120.06049 * 179.74978 * 27 4 3 46 46 H 1.08008 * 119.93919 * 180.27488 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1946 0.0000 4 6 3.5913 1.1931 -0.0005 5 6 4.3340 2.4701 -0.0011 6 8 3.7294 3.5248 -0.0006 7 7 5.6817 2.4659 -0.0011 8 6 6.4182 3.7323 -0.0011 9 1 5.8711 4.4676 0.5888 10 6 7.8008 3.5140 0.6173 11 6 8.6065 4.8178 0.5150 12 1 9.5172 4.8048 1.1139 13 6 8.8523 5.0619 -1.0001 14 6 7.4328 5.5024 -1.4456 15 1 7.4259 6.0066 -2.4120 16 6 6.5561 4.2377 -1.4386 17 7 6.9622 6.3756 -0.3501 18 6 6.0432 7.3842 -0.4665 19 1 5.6684 7.6633 -1.4401 20 6 5.5936 8.0477 0.6668 21 7 6.1454 7.8014 1.8361 22 14 4.2050 9.2900 0.5325 23 1 2.9139 8.6248 0.8418 24 1 4.4354 10.3960 1.4962 25 1 4.1619 9.8369 -0.8475 26 6 7.6502 5.9756 0.8869 27 6 4.2834 -0.0201 -0.0064 28 6 3.5856 -1.2085 -0.0006 29 6 2.1989 -1.2013 -0.0005 30 9 1.5197 -2.3693 -0.0004 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6550 2.1299 0.0004 35 1 6.1641 1.6243 -0.0011 36 1 7.6923 3.2378 1.6661 37 1 8.3200 2.7202 0.0803 38 1 9.1571 4.1443 -1.5035 39 1 9.5806 5.8573 -1.1588 40 1 7.0227 3.4674 -2.0525 41 1 5.5701 4.4756 -1.8374 42 1 5.8309 8.2648 2.6281 43 1 8.2197 6.8157 1.2846 44 1 6.9230 5.6358 1.6243 45 1 5.3633 -0.0268 -0.0109 46 1 4.1198 -2.1473 -0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047135708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:21 Heat of formation + Delta-G solvation = -48.535610 kcal Electronic energy + Delta-G solvation = -28936.239319 eV Core-core repulsion = 24932.791102 eV Total energy + Delta-G solvation = -4003.448217 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.03141 -41.71058 -40.68945 -39.18689 -36.17825 -34.81754 -33.96488 -32.38880 -32.10243 -31.08554 -29.77049 -27.95729 -27.19401 -25.14599 -24.88693 -23.33109 -22.78702 -21.41315 -21.11970 -20.15971 -18.99368 -18.73762 -18.37723 -17.78114 -16.98578 -16.80574 -16.63332 -16.26778 -15.96958 -15.63808 -15.35967 -15.16429 -14.63591 -14.50069 -14.34845 -14.24927 -14.12583 -13.82452 -13.74128 -13.44898 -13.37543 -13.23084 -13.04898 -12.98035 -12.86389 -12.63806 -12.52307 -12.14599 -12.06544 -11.87508 -11.61953 -11.42139 -11.15835 -11.02916 -10.81876 -10.66581 -10.12432 -10.02070 -9.70070 -8.80669 -7.84281 -5.14091 -0.40510 0.12237 1.37465 1.43273 1.48319 1.70741 2.12640 2.48653 2.65271 3.08217 3.34991 3.57164 3.60213 3.68841 3.73237 3.85033 3.94766 4.05734 4.10539 4.15060 4.39474 4.45139 4.51555 4.55208 4.62809 4.66389 4.68113 4.70030 4.81229 4.82504 4.86694 4.99040 5.08906 5.11987 5.12664 5.19498 5.24222 5.32215 5.36234 5.42062 5.50660 5.52322 5.66118 5.72989 5.77223 5.85934 6.24506 6.60111 7.15215 7.29927 7.84115 8.48129 9.26232 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.003361 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.755220 B = 8328.559244 C = 9802.765292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.130 4.130 3 C -0.053 4.053 4 C -0.150 4.150 5 C 0.545 3.455 6 O -0.585 6.585 7 N -0.702 5.702 8 C 0.152 3.848 9 H 0.047 0.953 10 C -0.101 4.101 11 C -0.106 4.106 12 H 0.111 0.889 13 C -0.109 4.109 14 C 0.140 3.860 15 H 0.062 0.938 16 C -0.124 4.124 17 N -0.614 5.614 18 C -0.229 4.229 19 H 0.071 0.929 20 C -0.063 4.063 21 N -0.946 5.946 22 Si 0.962 3.038 23 H -0.300 1.300 24 H -0.290 1.290 25 H -0.267 1.267 26 C 0.186 3.814 27 C -0.051 4.051 28 C -0.144 4.144 29 C 0.111 3.889 30 F -0.134 7.134 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.125 0.875 35 H 0.415 0.585 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.017 0.983 42 H 0.242 0.758 43 H -0.003 1.003 44 H 0.007 0.993 45 H 0.171 0.829 46 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.772 -24.075 -4.914 24.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.131 4.131 3 C -0.072 4.072 4 C -0.153 4.153 5 C 0.333 3.667 6 O -0.465 6.465 7 N -0.353 5.353 8 C 0.048 3.952 9 H 0.065 0.935 10 C -0.139 4.139 11 C -0.126 4.126 12 H 0.129 0.871 13 C -0.147 4.147 14 C 0.033 3.967 15 H 0.080 0.920 16 C -0.164 4.164 17 N -0.339 5.339 18 C -0.358 4.358 19 H 0.089 0.911 20 C -0.256 4.256 21 N -0.595 5.595 22 Si 0.791 3.209 23 H -0.228 1.228 24 H -0.216 1.216 25 H -0.192 1.192 26 C 0.062 3.938 27 C -0.070 4.070 28 C -0.163 4.163 29 C 0.092 3.908 30 F -0.112 7.112 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.143 0.857 35 H 0.253 0.747 36 H 0.083 0.917 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.036 0.964 42 H 0.052 0.948 43 H 0.016 0.984 44 H 0.025 0.975 45 H 0.189 0.811 46 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.233 -23.209 -4.787 23.698 hybrid contribution -1.371 1.105 0.381 1.801 sum -1.138 -22.104 -4.406 22.567 Atomic orbital electron populations 1.20811 0.88506 1.04096 1.03824 1.20038 0.98434 0.91140 1.03512 1.21039 0.93096 0.97965 0.95121 1.19992 0.94288 0.93054 1.07956 1.18752 0.83112 0.88915 0.75949 1.90867 1.69484 1.34827 1.51358 1.45847 1.05269 1.10242 1.73979 1.20873 0.93162 0.84228 0.96932 0.93506 1.21850 0.92834 0.98163 1.01018 1.22728 0.98149 0.94174 0.97530 0.87054 1.22936 0.94941 1.01931 0.94922 1.21888 0.93695 0.89536 0.91575 0.92017 1.22447 0.99087 0.98809 0.96097 1.44843 1.47235 1.36247 1.05556 1.19311 1.14745 1.08894 0.92886 0.91069 1.25454 1.01942 1.02748 0.95454 1.70160 1.44143 1.46724 0.98518 0.85293 0.79565 0.78452 0.77568 1.22828 1.21620 1.19161 1.21086 0.91869 0.93065 0.87829 1.21434 1.01703 0.89267 0.94549 1.21395 0.91412 1.00874 1.02582 1.17946 0.90825 0.80621 1.01454 1.91499 1.80344 1.45869 1.93536 0.89668 0.90131 0.90519 0.85691 0.74666 0.91679 0.87296 0.87238 0.91959 0.89201 0.96403 0.94820 0.98432 0.97480 0.81122 0.80566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 9.83 71.24 0.70 -1.23 16 2 C -0.13 -2.72 5.88 -19.86 -0.12 -2.84 16 3 C -0.05 -1.38 9.24 22.51 0.21 -1.18 16 4 C -0.15 -3.82 5.87 -20.09 -0.12 -3.94 16 5 C 0.54 18.78 7.73 86.75 0.67 19.45 16 6 O -0.58 -28.06 16.00 -3.93 -0.06 -28.12 16 7 N -0.70 -19.72 5.02 -445.49 -2.23 -21.95 16 8 C 0.15 5.44 2.08 45.00 0.09 5.54 16 9 H 0.05 2.40 5.39 -2.39 -0.01 2.39 16 10 C -0.10 -2.75 4.92 30.81 0.15 -2.59 16 11 C -0.11 -3.47 4.33 -9.18 -0.04 -3.51 16 12 H 0.11 3.07 8.14 -2.38 -0.02 3.05 16 13 C -0.11 -3.24 6.18 32.17 0.20 -3.05 16 14 C 0.14 5.54 4.30 45.79 0.20 5.73 16 15 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 16 C -0.12 -4.45 5.27 30.89 0.16 -4.28 16 17 N -0.61 -31.98 2.43 -664.45 -1.61 -33.60 16 18 C -0.23 -13.65 10.28 84.03 0.86 -12.78 16 19 H 0.07 4.17 7.84 -2.91 -0.02 4.15 16 20 C -0.06 -3.85 5.48 84.86 0.47 -3.39 16 21 N -0.95 -60.12 10.40 21.65 0.23 -59.89 16 22 Si 0.96 50.03 29.56 68.60 2.03 52.06 16 23 H -0.30 -16.05 7.11 99.48 0.71 -15.34 16 24 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 25 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 26 C 0.19 9.18 4.10 86.85 0.36 9.53 16 27 C -0.05 -0.81 9.54 22.52 0.21 -0.60 16 28 C -0.14 -2.01 10.01 22.27 0.22 -1.79 16 29 C 0.11 2.02 7.25 22.47 0.16 2.18 16 30 F -0.13 -2.41 16.46 44.97 0.74 -1.67 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.17 7.63 -2.39 -0.02 1.16 16 33 H 0.08 1.26 8.08 -2.38 -0.02 1.24 16 34 H 0.13 3.72 7.65 -2.91 -0.02 3.70 16 35 H 0.41 7.14 6.63 -92.71 -0.61 6.52 16 36 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.11 1.90 7.97 -2.39 -0.02 1.88 16 38 H 0.11 2.27 7.74 -2.38 -0.02 2.25 16 39 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.09 2.40 8.00 -2.39 -0.02 2.38 16 41 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.24 15.11 8.31 -92.71 -0.77 14.34 16 43 H 0.00 -0.15 7.57 -2.38 -0.02 -0.16 16 44 H 0.01 0.40 6.02 -2.39 -0.01 0.39 16 45 H 0.17 1.42 6.40 -2.91 -0.02 1.40 16 46 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -83.63 365.60 3.87 -79.77 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.39 Total: 12.13 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 4.39 Total: 1.27 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -3.62 Total: -115.45 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.06 Total: -28.12 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.74 Total: -1.67 kcal Atomic # 14 Polarization: 50.03 SS G_CDS: 2.03 Total: 52.06 kcal Total: -83.63 3.87 -79.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047135708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.231 kcal (2) G-P(sol) polarization free energy of solvation -83.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds