Wall clock time and date at job start Tue Mar 31 2020 16:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46715 * 2 1 4 4 H 1.08995 * 109.47458 * 305.00209 * 3 2 1 5 5 F 1.39904 * 109.46975 * 65.00592 * 3 2 1 6 6 C 1.53008 * 109.46689 * 185.00233 * 3 2 1 7 7 N 1.46902 * 109.46622 * 180.02562 * 6 3 2 8 8 C 1.46906 * 110.99573 * 179.97438 * 7 6 3 9 9 C 1.52998 * 109.47020 * 179.97438 * 8 7 6 10 10 C 1.53006 * 110.64031 * 61.68901 * 9 8 7 11 11 C 1.55152 * 110.72278 * 185.02299 * 9 8 7 12 12 C 1.54910 * 101.58476 * 153.86496 * 11 9 8 13 13 N 1.47424 * 104.82907 * 322.99629 * 12 11 9 14 14 C 1.34776 * 125.64250 * 204.16860 * 13 12 11 15 15 O 1.21284 * 119.99799 * 179.97438 * 14 13 12 16 16 C 1.50698 * 120.00509 * 359.94679 * 14 13 12 17 17 S 1.81002 * 109.47392 * 180.02562 * 16 14 13 18 18 C 1.76197 * 99.99820 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00751 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00175 * 180.02562 * 18 17 16 21 21 N 1.31636 * 119.99480 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00319 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46917 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47268 * 120.00081 * 22 20 18 25 25 H 1.48508 * 109.46664 * 239.99797 * 22 20 18 26 26 C 1.47022 * 108.70662 * 24.12602 * 13 12 11 27 27 H 1.08997 * 109.47436 * 59.99503 * 1 2 3 28 28 H 1.09004 * 109.47014 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46766 * 299.99316 * 1 2 3 30 30 H 1.09000 * 109.46766 * 240.00684 * 2 1 3 31 31 H 1.08998 * 109.47427 * 119.99943 * 2 1 3 32 32 H 1.08990 * 109.46924 * 60.00331 * 6 3 2 33 33 H 1.09004 * 109.46978 * 300.00208 * 6 3 2 34 34 H 1.00896 * 111.00219 * 303.95583 * 7 6 3 35 35 H 1.09002 * 109.46991 * 299.99841 * 8 7 6 36 36 H 1.09000 * 109.47202 * 60.00133 * 8 7 6 37 37 H 1.09001 * 109.47021 * 60.69843 * 10 9 8 38 38 H 1.08998 * 109.47190 * 180.69978 * 10 9 8 39 39 H 1.08998 * 109.47072 * 300.70071 * 10 9 8 40 40 H 1.09004 * 111.00540 * 271.94250 * 11 9 8 41 41 H 1.09002 * 111.00311 * 35.78818 * 11 9 8 42 42 H 1.08992 * 110.36744 * 204.15334 * 12 11 9 43 43 H 1.08996 * 110.36359 * 81.83187 * 12 11 9 44 44 H 1.08997 * 109.47176 * 300.01066 * 16 14 13 45 45 H 1.09003 * 109.46921 * 60.00714 * 16 14 13 46 46 H 0.96999 * 119.99383 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.87836 * 239.52503 * 26 13 12 48 48 H 1.08990 * 110.00856 * 118.43701 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 9 1.6699 2.0680 1.1955 6 6 3.5648 1.4444 -0.1258 7 7 4.0544 2.8294 -0.1252 8 6 5.5181 2.8704 -0.2441 9 6 5.9895 4.3259 -0.2406 10 6 5.6152 5.0109 1.0754 11 6 7.5184 4.4084 -0.4912 12 6 7.6560 5.8205 -1.1132 13 7 6.4551 5.9815 -1.9530 14 6 6.3432 6.8054 -3.0137 15 8 5.3027 6.8565 -3.6347 16 6 7.5106 7.6638 -3.4276 17 16 7.0508 8.6515 -4.8730 18 6 8.5550 9.5314 -5.1333 19 1 9.3983 9.3649 -4.4794 20 6 8.6564 10.4386 -6.1790 21 7 7.6285 10.6420 -6.9757 22 14 10.2513 11.3709 -6.4554 23 1 11.2459 10.9651 -5.4301 24 1 10.7788 11.0592 -7.8081 25 1 9.9967 12.8300 -6.3475 26 6 5.4002 5.0936 -1.4426 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 3.8531 0.9572 -1.0571 33 1 3.9995 0.9053 0.7160 34 1 3.6166 3.3681 -0.8574 35 1 5.9659 2.3409 0.5969 36 1 5.8204 2.3932 -1.1764 37 1 6.0969 4.4927 1.9046 38 1 5.9484 6.0484 1.0525 39 1 4.5336 4.9794 1.2065 40 1 8.0722 4.3381 0.4450 41 1 7.8414 3.6392 -1.1929 42 1 8.5568 5.8799 -1.7238 43 1 7.6763 6.5791 -0.3308 44 1 7.7833 8.3268 -2.6066 45 1 8.3593 7.0269 -3.6774 46 1 7.6994 11.2757 -7.7067 47 1 5.0990 4.3910 -2.2196 48 1 4.5407 5.6819 -1.1216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754687588.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:52 Heat of formation + Delta-G solvation = -102.718209 kcal Electronic energy + Delta-G solvation = -26136.759761 eV Core-core repulsion = 22266.405961 eV Total energy + Delta-G solvation = -3870.353800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -47.78478 -40.23696 -38.10758 -36.43476 -34.50574 -32.77374 -32.42837 -29.84017 -29.56321 -28.55586 -26.54074 -25.57383 -25.10237 -23.44779 -22.43220 -21.65613 -19.41734 -19.26226 -17.66299 -17.23570 -16.76316 -16.28528 -15.95741 -15.69598 -15.36521 -15.02589 -14.80666 -14.52457 -14.39193 -14.20454 -13.96206 -13.82322 -13.56042 -13.14970 -13.02798 -12.74142 -12.64319 -12.51085 -12.38556 -12.27433 -12.18255 -12.03258 -11.69750 -11.54581 -11.26335 -11.07388 -11.05790 -11.01572 -10.98253 -10.83899 -10.75192 -10.62761 -9.80376 -9.39248 -9.07510 -8.83348 -8.48229 -8.22659 -6.50202 -6.21899 -3.92374 2.92904 3.07922 3.21315 3.26332 3.31197 3.51729 3.62753 4.12401 4.18722 4.21982 4.27076 4.33988 4.45381 4.50029 4.61420 4.81230 4.86620 4.94336 5.04083 5.06555 5.11337 5.13359 5.14753 5.27481 5.32684 5.36663 5.37659 5.44744 5.49203 5.51925 5.61860 5.68958 5.73698 5.75890 5.79117 5.81038 5.88911 5.93108 5.96094 6.14089 6.21599 6.42189 6.53714 6.93086 7.59728 7.69385 8.35350 8.57516 9.23475 10.85627 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.023827 B = 0.001984 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.872595 B =14107.079368 C =14877.119513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.151 4.151 3 C 0.096 3.904 4 H 0.081 0.919 5 F -0.203 7.203 6 C 0.031 3.969 7 N -0.685 5.685 8 C 0.077 3.923 9 C -0.071 4.071 10 C -0.128 4.128 11 C -0.124 4.124 12 C 0.102 3.898 13 N -0.625 5.625 14 C 0.547 3.453 15 O -0.517 6.517 16 C -0.146 4.146 17 S -0.061 6.061 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.119 3.881 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.345 0.655 35 H 0.078 0.922 36 H 0.034 0.966 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.268 0.732 47 H 0.059 0.941 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.773 -22.140 17.951 29.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.189 4.189 3 C 0.059 3.941 4 H 0.098 0.902 5 F -0.184 7.184 6 C -0.098 4.098 7 N -0.316 5.316 8 C -0.052 4.052 9 C -0.072 4.072 10 C -0.185 4.185 11 C -0.162 4.162 12 C -0.022 4.022 13 N -0.362 5.362 14 C 0.336 3.664 15 O -0.391 6.391 16 C -0.297 4.297 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.005 4.005 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.163 0.837 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.408 -21.835 17.505 28.949 hybrid contribution 2.401 0.312 -0.384 2.452 sum -5.007 -21.523 17.121 27.954 Atomic orbital electron populations 1.21759 0.94655 1.02225 1.02580 1.22112 0.97498 0.95554 1.03724 1.21595 0.94442 0.93351 0.84719 0.90151 1.92837 1.92685 1.84187 1.48660 1.22579 0.94382 0.90983 1.01900 1.60385 1.06022 1.11328 1.53902 1.21934 0.87551 0.95202 1.00509 1.21652 0.95110 0.94567 0.95866 1.21705 1.02802 0.99542 0.94494 1.22884 0.94973 0.96889 1.01472 1.22285 0.88903 0.96699 0.94272 1.48479 1.14433 1.42787 1.30515 1.20033 0.89486 0.78810 0.78083 1.90705 1.30143 1.65838 1.52418 1.23505 0.98779 1.01473 1.05922 1.85401 1.20579 1.48029 1.29463 1.22903 0.99347 1.27852 1.18155 0.90881 1.25001 0.97528 0.96197 0.94900 1.70034 1.29721 1.34004 1.16512 0.86110 0.81853 0.79274 0.78218 1.19615 1.20567 1.20549 1.21919 0.91367 0.92660 0.94514 0.92387 0.92174 0.92015 0.90222 0.90656 0.93472 0.89820 0.83658 0.90339 0.94732 0.92576 0.92764 0.91018 0.89609 0.90516 0.90302 0.91260 0.89302 0.89367 0.92240 0.92275 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.83 37.16 0.37 -0.48 16 2 C -0.15 -0.79 5.70 -26.73 -0.15 -0.95 16 3 C 0.10 0.66 3.53 -26.72 -0.09 0.56 16 4 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 5 F -0.20 -2.05 16.68 2.25 0.04 -2.01 16 6 C 0.03 0.20 5.44 -3.82 -0.02 0.18 16 7 N -0.68 -5.42 5.81 -113.77 -0.66 -6.08 16 8 C 0.08 0.58 4.56 -3.82 -0.02 0.56 16 9 C -0.07 -0.61 0.71 -152.68 -0.11 -0.72 16 10 C -0.13 -1.10 8.29 37.16 0.31 -0.80 16 11 C -0.12 -1.00 6.03 -24.59 -0.15 -1.14 16 12 C 0.10 1.10 6.38 -2.53 -0.02 1.09 16 13 N -0.62 -9.18 3.33 -170.53 -0.57 -9.75 16 14 C 0.55 10.80 7.87 -10.99 -0.09 10.72 16 15 O -0.52 -12.22 16.19 5.55 0.09 -12.13 16 16 C -0.15 -3.05 5.16 36.00 0.19 -2.87 16 17 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 18 C -0.53 -15.33 9.50 30.94 0.29 -15.04 16 19 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 22 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.12 1.44 5.10 -3.07 -0.02 1.43 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.39 7.94 -51.93 -0.41 -0.02 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.34 2.87 7.60 -39.29 -0.30 2.57 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.03 0.26 8.13 -51.93 -0.42 -0.16 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.50 7.52 -51.93 -0.39 0.11 16 39 H 0.07 0.69 7.71 -51.93 -0.40 0.29 16 40 H 0.09 0.54 8.04 -51.93 -0.42 0.12 16 41 H 0.08 0.60 8.04 -51.93 -0.42 0.19 16 42 H 0.08 0.84 7.47 -51.93 -0.39 0.45 16 43 H 0.07 0.70 7.77 -51.93 -0.40 0.30 16 44 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 45 H 0.09 1.70 7.85 -51.91 -0.41 1.29 16 46 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.06 0.74 7.61 -51.93 -0.40 0.35 16 48 H 0.07 0.92 7.84 -51.93 -0.41 0.51 16 LS Contribution 401.32 15.07 6.05 6.05 Total: -1.00 -34.67 401.32 -9.69 -44.36 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -8.53 Total: -1.98 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 0.40 Total: -5.45 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: -0.49 Total: -41.39 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.67 -9.69 -44.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754687588.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.356 kcal (2) G-P(sol) polarization free energy of solvation -34.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds