Wall clock time and date at job start Tue Mar 31 2020 16:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46715 * 2 1 4 4 H 1.08995 * 109.47458 * 305.00209 * 3 2 1 5 5 F 1.39904 * 109.46975 * 65.00592 * 3 2 1 6 6 C 1.53008 * 109.46689 * 185.00233 * 3 2 1 7 7 N 1.46902 * 109.46622 * 180.02562 * 6 3 2 8 8 C 1.46906 * 110.99573 * 179.97438 * 7 6 3 9 9 C 1.52998 * 109.47020 * 179.97438 * 8 7 6 10 10 C 1.53006 * 110.64031 * 61.68901 * 9 8 7 11 11 C 1.55152 * 110.72278 * 185.02299 * 9 8 7 12 12 C 1.54910 * 101.58476 * 153.86496 * 11 9 8 13 13 N 1.47424 * 104.82907 * 322.99629 * 12 11 9 14 14 C 1.34776 * 125.64250 * 204.16860 * 13 12 11 15 15 O 1.21284 * 119.99799 * 179.97438 * 14 13 12 16 16 C 1.50698 * 120.00509 * 359.94679 * 14 13 12 17 17 S 1.81002 * 109.47392 * 180.02562 * 16 14 13 18 18 C 1.76197 * 99.99820 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00751 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00175 * 180.02562 * 18 17 16 21 21 N 1.31636 * 119.99480 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00319 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46917 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47268 * 120.00081 * 22 20 18 25 25 H 1.48508 * 109.46664 * 239.99797 * 22 20 18 26 26 C 1.47022 * 108.70662 * 24.12602 * 13 12 11 27 27 H 1.08997 * 109.47436 * 59.99503 * 1 2 3 28 28 H 1.09004 * 109.47014 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46766 * 299.99316 * 1 2 3 30 30 H 1.09000 * 109.46766 * 240.00684 * 2 1 3 31 31 H 1.08998 * 109.47427 * 119.99943 * 2 1 3 32 32 H 1.08990 * 109.46924 * 60.00331 * 6 3 2 33 33 H 1.09004 * 109.46978 * 300.00208 * 6 3 2 34 34 H 1.00896 * 111.00219 * 303.95583 * 7 6 3 35 35 H 1.09002 * 109.46991 * 299.99841 * 8 7 6 36 36 H 1.09000 * 109.47202 * 60.00133 * 8 7 6 37 37 H 1.09001 * 109.47021 * 60.69843 * 10 9 8 38 38 H 1.08998 * 109.47190 * 180.69978 * 10 9 8 39 39 H 1.08998 * 109.47072 * 300.70071 * 10 9 8 40 40 H 1.09004 * 111.00540 * 271.94250 * 11 9 8 41 41 H 1.09002 * 111.00311 * 35.78818 * 11 9 8 42 42 H 1.08992 * 110.36744 * 204.15334 * 12 11 9 43 43 H 1.08996 * 110.36359 * 81.83187 * 12 11 9 44 44 H 1.08997 * 109.47176 * 300.01066 * 16 14 13 45 45 H 1.09003 * 109.46921 * 60.00714 * 16 14 13 46 46 H 0.96999 * 119.99383 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.87836 * 239.52503 * 26 13 12 48 48 H 1.08990 * 110.00856 * 118.43701 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 9 1.6699 2.0680 1.1955 6 6 3.5648 1.4444 -0.1258 7 7 4.0544 2.8294 -0.1252 8 6 5.5181 2.8704 -0.2441 9 6 5.9895 4.3259 -0.2406 10 6 5.6152 5.0109 1.0754 11 6 7.5184 4.4084 -0.4912 12 6 7.6560 5.8205 -1.1132 13 7 6.4551 5.9815 -1.9530 14 6 6.3432 6.8054 -3.0137 15 8 5.3027 6.8565 -3.6347 16 6 7.5106 7.6638 -3.4276 17 16 7.0508 8.6515 -4.8730 18 6 8.5550 9.5314 -5.1333 19 1 9.3983 9.3649 -4.4794 20 6 8.6564 10.4386 -6.1790 21 7 7.6285 10.6420 -6.9757 22 14 10.2513 11.3709 -6.4554 23 1 11.2459 10.9651 -5.4301 24 1 10.7788 11.0592 -7.8081 25 1 9.9967 12.8300 -6.3475 26 6 5.4002 5.0936 -1.4426 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 3.8531 0.9572 -1.0571 33 1 3.9995 0.9053 0.7160 34 1 3.6166 3.3681 -0.8574 35 1 5.9659 2.3409 0.5969 36 1 5.8204 2.3932 -1.1764 37 1 6.0969 4.4927 1.9046 38 1 5.9484 6.0484 1.0525 39 1 4.5336 4.9794 1.2065 40 1 8.0722 4.3381 0.4450 41 1 7.8414 3.6392 -1.1929 42 1 8.5568 5.8799 -1.7238 43 1 7.6763 6.5791 -0.3308 44 1 7.7833 8.3268 -2.6066 45 1 8.3593 7.0269 -3.6774 46 1 7.6994 11.2757 -7.7067 47 1 5.0990 4.3910 -2.2196 48 1 4.5407 5.6819 -1.1216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754687588.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:51 Heat of formation + Delta-G solvation = -125.196128 kcal Electronic energy + Delta-G solvation = -26137.734477 eV Core-core repulsion = 22266.405961 eV Total energy + Delta-G solvation = -3871.328515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.45763 -41.33526 -39.33860 -37.18486 -35.17010 -34.60160 -33.66694 -31.05886 -30.65063 -29.20213 -27.79710 -27.29515 -26.03693 -24.15441 -23.13724 -22.16057 -20.80260 -20.11163 -19.52151 -18.16100 -17.76244 -17.36511 -16.90072 -16.67298 -16.55535 -16.41851 -15.93523 -15.78298 -15.40070 -15.18137 -14.98656 -14.66812 -14.51316 -14.39546 -13.91336 -13.65856 -13.57863 -13.55054 -13.39389 -13.16862 -13.09764 -12.92488 -12.84170 -12.79002 -12.64424 -12.61424 -11.97230 -11.88736 -11.80482 -11.65580 -11.59338 -11.57918 -11.24621 -11.17158 -10.98129 -10.29949 -9.72579 -9.40434 -8.70108 -8.36265 -6.15217 1.22607 1.40972 1.44061 1.53363 1.56504 2.08221 2.25751 2.94175 2.97989 3.22168 3.45343 3.53817 3.63388 3.78253 3.82218 3.86320 3.99012 4.06523 4.17745 4.21694 4.26891 4.33408 4.37912 4.41767 4.48166 4.63259 4.64313 4.70377 4.72397 4.77459 4.85073 4.87185 4.92846 4.95736 5.05020 5.10992 5.19996 5.21942 5.27953 5.34359 5.34728 5.40495 5.51862 5.96694 6.18551 6.29456 6.37236 7.04841 7.08737 8.73386 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.023827 B = 0.001984 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.872595 B =14107.079368 C =14877.119513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.146 4.146 3 C 0.089 3.911 4 H 0.080 0.920 5 F -0.223 7.223 6 C 0.035 3.965 7 N -0.697 5.697 8 C 0.082 3.918 9 C -0.059 4.059 10 C -0.123 4.123 11 C -0.112 4.112 12 C 0.089 3.911 13 N -0.615 5.615 14 C 0.543 3.457 15 O -0.569 6.569 16 C -0.119 4.119 17 S -0.152 6.152 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 1.001 2.999 23 H -0.256 1.256 24 H -0.273 1.273 25 H -0.274 1.274 26 C 0.115 3.885 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.339 0.661 35 H 0.094 0.906 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.057 0.943 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.271 0.729 47 H 0.053 0.947 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.267 -23.687 19.759 31.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.184 4.184 3 C 0.053 3.947 4 H 0.098 0.902 5 F -0.205 7.205 6 C -0.095 4.095 7 N -0.328 5.328 8 C -0.047 4.047 9 C -0.060 4.060 10 C -0.181 4.181 11 C -0.150 4.150 12 C -0.033 4.033 13 N -0.350 5.350 14 C 0.332 3.668 15 O -0.448 6.448 16 C -0.270 4.270 17 S 0.075 5.925 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.179 1.179 24 H -0.198 1.198 25 H -0.199 1.199 26 C -0.008 4.008 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.157 0.843 35 H 0.113 0.887 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.134 0.866 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.879 -23.426 19.375 30.789 hybrid contribution 1.558 0.705 -0.843 1.906 sum -3.322 -22.721 18.532 29.508 Atomic orbital electron populations 1.21775 0.94989 1.02720 1.01904 1.22092 0.97174 0.94473 1.04638 1.21805 0.95017 0.94202 0.83724 0.90215 1.92792 1.92945 1.84746 1.49970 1.22580 0.93847 0.90303 1.02724 1.60418 1.06384 1.12206 1.53805 1.21918 0.87318 0.94126 1.01299 1.21601 0.95547 0.94836 0.93977 1.21655 1.02110 0.99325 0.94962 1.22903 0.94336 0.94922 1.02810 1.22681 0.87285 0.99186 0.94161 1.48449 1.16592 1.41027 1.28921 1.19817 0.88358 0.79483 0.79169 1.90681 1.31661 1.67782 1.54679 1.23298 0.99765 1.01067 1.02860 1.85597 1.22525 1.50221 1.34131 1.23226 0.99298 1.28110 1.18678 0.89859 1.26162 1.01630 0.97088 0.94327 1.70198 1.32403 1.34930 1.17270 0.84876 0.76809 0.77506 0.78566 1.17927 1.19841 1.19912 1.22107 0.90648 0.92174 0.95835 0.92442 0.91090 0.93341 0.88574 0.90394 0.92125 0.89344 0.84332 0.88730 0.94503 0.90686 0.93535 0.92372 0.86579 0.89746 0.89703 0.89992 0.87669 0.87463 0.91958 0.92848 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.83 71.98 0.71 -0.89 16 2 C -0.15 -1.34 5.70 30.60 0.17 -1.17 16 3 C 0.09 1.16 3.53 30.60 0.11 1.27 16 4 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 5 F -0.22 -4.48 16.68 44.97 0.75 -3.73 16 6 C 0.03 0.39 5.44 86.31 0.47 0.86 16 7 N -0.70 -10.11 5.81 -513.86 -2.98 -13.10 16 8 C 0.08 1.02 4.56 86.30 0.39 1.41 16 9 C -0.06 -0.88 0.71 -50.99 -0.04 -0.91 16 10 C -0.12 -1.85 8.29 71.98 0.60 -1.25 16 11 C -0.11 -1.38 6.03 31.98 0.19 -1.19 16 12 C 0.09 1.68 6.38 86.86 0.55 2.23 16 13 N -0.62 -17.56 3.33 -811.84 -2.70 -20.26 16 14 C 0.54 21.70 7.87 87.66 0.69 22.39 16 15 O -0.57 -28.08 16.19 -3.04 -0.05 -28.13 16 16 C -0.12 -4.94 5.16 71.24 0.37 -4.57 16 17 S -0.15 -8.64 20.57 -56.49 -1.16 -9.81 16 18 C -0.55 -31.48 9.50 67.96 0.65 -30.83 16 19 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 20 C 0.01 0.72 5.49 84.86 0.47 1.19 16 21 N -0.91 -56.44 13.22 21.65 0.29 -56.16 16 22 Si 1.00 43.74 29.55 68.60 2.03 45.76 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 C 0.12 2.74 5.10 86.73 0.44 3.19 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.05 0.62 7.94 -2.39 -0.02 0.60 16 30 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.34 5.54 7.60 -89.70 -0.68 4.86 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.04 0.46 8.13 -2.39 -0.02 0.44 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.05 0.77 7.52 -2.39 -0.02 0.75 16 39 H 0.06 1.05 7.71 -2.39 -0.02 1.03 16 40 H 0.12 0.85 8.04 -2.39 -0.02 0.83 16 41 H 0.08 0.98 8.04 -2.39 -0.02 0.97 16 42 H 0.08 1.55 7.47 -2.39 -0.02 1.53 16 43 H 0.08 1.41 7.77 -2.39 -0.02 1.39 16 44 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 45 H 0.11 4.02 7.85 -2.39 -0.02 4.00 16 46 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 47 H 0.05 1.35 7.61 -2.39 -0.02 1.33 16 48 H 0.05 1.48 7.84 -2.39 -0.02 1.46 16 Total: -1.00 -78.45 401.32 2.19 -76.26 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.25 Total: 17.43 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 5.77 Total: -8.28 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -5.40 Total: -89.51 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.05 Total: -28.13 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.75 Total: -3.73 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.81 kcal Total: -78.45 2.19 -76.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754687588.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.931 kcal (2) G-P(sol) polarization free energy of solvation -78.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds