Wall clock time and date at job start Tue Mar 31 2020 18:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46907 * 109.47518 * 259.51078 * 3 2 1 5 5 C 1.46903 * 110.99569 * 298.87576 * 4 3 2 6 6 C 1.53001 * 109.46884 * 301.10074 * 5 4 3 7 7 C 1.46900 * 111.00168 * 174.92338 * 4 3 2 8 8 H 1.08993 * 109.47457 * 65.62885 * 7 4 3 9 9 C 1.53003 * 109.46882 * 305.62990 * 7 4 3 10 10 C 1.50695 * 109.46815 * 185.63517 * 7 4 3 11 11 O 1.21291 * 120.00135 * 25.10763 * 10 7 4 12 12 N 1.34778 * 120.00059 * 205.10941 * 10 7 4 13 13 C 1.46497 * 119.99608 * 4.76365 * 12 10 7 14 14 C 1.50704 * 109.47365 * 266.33480 * 13 12 10 15 15 H 1.07996 * 119.99939 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00063 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99847 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99989 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47508 * 89.99694 * 18 16 14 20 20 H 1.48504 * 109.47282 * 209.99810 * 18 16 14 21 21 H 1.48508 * 109.47034 * 329.99567 * 18 16 14 22 22 C 1.40026 * 120.00486 * 184.76860 * 12 10 7 23 23 C 1.38852 * 120.04769 * 172.99864 * 22 12 10 24 24 C 1.38117 * 119.95313 * 180.25721 * 23 22 12 25 25 C 1.38471 * 120.04331 * 359.46286 * 24 23 22 26 26 F 1.35106 * 119.95247 * 180.23806 * 25 24 23 27 27 C 1.38474 * 120.09440 * 0.51280 * 25 24 23 28 28 C 1.38110 * 120.04186 * 359.76852 * 27 25 24 29 29 H 4.40887 * 5.52292 * 179.97438 * 4 1 2 30 30 H 1.09002 * 109.47595 * 139.50888 * 3 2 1 31 31 H 1.09007 * 109.47555 * 19.50918 * 3 2 1 32 32 H 1.08996 * 109.47021 * 61.10288 * 5 4 3 33 33 H 1.08999 * 109.46852 * 181.10326 * 5 4 3 34 34 H 1.09005 * 109.47197 * 305.01116 * 6 5 4 35 35 H 1.08995 * 109.47309 * 65.01767 * 6 5 4 36 36 H 1.08999 * 109.46449 * 185.01471 * 6 5 4 37 37 H 1.08996 * 109.47255 * 305.26732 * 9 7 4 38 38 H 1.08998 * 109.47176 * 65.26901 * 9 7 4 39 39 H 1.09001 * 109.46719 * 185.26585 * 9 7 4 40 40 H 1.08995 * 109.47608 * 26.33605 * 13 12 10 41 41 H 1.09004 * 109.47289 * 146.33748 * 13 12 10 42 42 H 0.97005 * 119.99746 * 179.97438 * 17 16 14 43 43 H 1.07997 * 120.02025 * 359.97438 * 23 22 12 44 44 H 1.08001 * 119.97359 * 179.72505 * 24 23 22 45 45 H 1.07996 * 119.97917 * 179.74340 * 27 25 24 46 46 H 1.08002 * 120.02174 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1356 0.2530 1.3619 5 6 2.6861 1.5643 1.8483 6 6 3.1960 2.6589 0.9088 7 6 4.5991 0.1418 1.4242 8 1 5.0495 0.9357 0.8286 9 6 5.0311 -1.2180 0.8717 10 6 5.0519 0.2691 2.8559 11 8 4.2945 -0.0162 3.7592 12 7 6.2986 0.7002 3.1325 13 6 7.1777 1.1438 2.0479 14 6 8.0342 -0.0092 1.5918 15 1 7.9340 -0.9758 2.0630 16 6 8.9464 0.1700 0.5736 17 7 9.0687 1.3472 0.0001 18 14 10.0074 -1.2594 0.0078 19 1 9.3114 -1.9925 -1.0800 20 1 11.3060 -0.7434 -0.4951 21 1 10.2487 -2.1788 1.1488 22 6 6.7536 0.7238 4.4566 23 6 8.0804 1.0277 4.7305 24 6 8.5284 1.0453 6.0369 25 6 7.6527 0.7709 7.0738 26 9 8.0917 0.7933 8.3513 27 6 6.3289 0.4680 6.8029 28 6 5.8783 0.4438 5.4976 29 1 -1.0500 0.0002 0.0000 30 1 3.0090 0.7824 -0.6673 31 1 3.0098 -0.9679 -0.3432 32 1 1.5967 1.5876 1.8760 33 1 3.0788 1.7340 2.8508 34 1 4.2788 2.5790 0.8116 35 1 2.7335 2.5412 -0.0711 36 1 2.9390 3.6365 1.3167 37 1 4.5081 -2.0105 1.4069 38 1 4.7868 -1.2734 -0.1891 39 1 6.1064 -1.3387 1.0036 40 1 6.5738 1.5002 1.2134 41 1 7.8164 1.9517 2.4052 42 1 9.7108 1.4734 -0.7160 43 1 8.7627 1.2458 3.9222 44 1 9.5615 1.2773 6.2500 45 1 5.6485 0.2503 7.6128 46 1 4.8459 0.2071 5.2866 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266946281.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:52 Heat of formation + Delta-G solvation = 32.909755 kcal Electronic energy + Delta-G solvation = -29395.015296 eV Core-core repulsion = 25395.098815 eV Total energy + Delta-G solvation = -3999.916481 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.43778 -40.61003 -38.64338 -37.16432 -35.34334 -33.15554 -32.78625 -31.89295 -30.63449 -29.58262 -28.49044 -27.41716 -26.50701 -23.76768 -23.61001 -22.46530 -22.16660 -20.87499 -18.61411 -17.92428 -17.33852 -17.16722 -16.78647 -16.39714 -15.87968 -15.57653 -15.20947 -15.15955 -14.70531 -14.53835 -14.15035 -14.04258 -13.61487 -13.10944 -13.01353 -12.91772 -12.69317 -12.62247 -12.53733 -12.31018 -12.03174 -12.01634 -11.76352 -11.57053 -11.27097 -11.20155 -11.07158 -10.88153 -10.70899 -10.66017 -10.37136 -10.33804 -10.11765 -10.02076 -9.20426 -8.82013 -8.71535 -8.62581 -8.07075 -7.25264 -6.37526 -4.46263 1.57354 1.73885 2.69145 2.89577 3.06414 3.11918 3.21052 3.24889 3.45638 4.13907 4.20905 4.24172 4.44797 4.76750 4.86471 4.95463 5.16025 5.22182 5.27811 5.30682 5.39488 5.45524 5.54315 5.56494 5.60052 5.79321 5.82742 5.95071 6.00502 6.00960 6.05440 6.09844 6.24931 6.35290 6.36473 6.57244 6.66280 6.71414 6.72184 6.79506 6.94048 7.09268 7.12978 7.14300 7.54448 7.64423 7.66161 7.76900 7.97170 8.56654 8.69670 9.21778 10.68481 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008121 B = 0.005163 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3446.878677 B = 5422.324747 C = 8052.928017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.165 4.165 3 C 0.152 3.848 4 N -0.513 5.513 5 C 0.046 3.954 6 C -0.196 4.196 7 C 0.071 3.929 8 H 0.082 0.918 9 C -0.151 4.151 10 C 0.527 3.473 11 O -0.522 6.522 12 N -0.534 5.534 13 C 0.226 3.774 14 C -0.541 4.541 15 H 0.067 0.933 16 C 0.071 3.929 17 N -0.886 5.886 18 Si 0.895 3.105 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.271 1.271 22 C 0.164 3.836 23 C -0.116 4.116 24 C -0.135 4.135 25 C 0.050 3.950 26 F -0.153 7.153 27 C -0.138 4.138 28 C -0.155 4.155 29 H 0.215 0.785 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.047 0.953 41 H 0.046 0.954 42 H 0.268 0.732 43 H 0.150 0.850 44 H 0.130 0.870 45 H 0.127 0.873 46 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.633 0.630 1.293 8.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.165 4.165 3 C 0.026 3.974 4 N -0.237 5.237 5 C -0.081 4.081 6 C -0.255 4.255 7 C -0.039 4.039 8 H 0.099 0.901 9 C -0.208 4.208 10 C 0.317 3.683 11 O -0.401 6.401 12 N -0.253 5.253 13 C 0.107 3.893 14 C -0.579 4.579 15 H 0.085 0.915 16 C -0.133 4.133 17 N -0.523 5.523 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.210 1.210 21 H -0.195 1.195 22 C 0.067 3.933 23 C -0.137 4.137 24 C -0.155 4.155 25 C 0.030 3.970 26 F -0.132 7.132 27 C -0.157 4.157 28 C -0.174 4.174 29 H 0.232 0.768 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.167 0.833 44 H 0.148 0.852 45 H 0.145 0.855 46 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -9.095 0.230 1.858 9.286 hybrid contribution 1.148 -0.005 -0.764 1.379 sum -7.948 0.225 1.094 8.026 Atomic orbital electron populations 1.24785 0.95774 1.02061 1.00386 1.22841 0.94100 0.99529 1.00067 1.19161 0.84925 1.02818 0.90505 1.62020 1.09691 1.30899 1.21132 1.22233 1.00816 0.86025 0.99065 1.22477 1.02219 1.00148 1.00667 1.21604 0.87346 1.01314 0.93678 0.90070 1.21986 1.04859 0.93808 1.00192 1.20435 0.80850 0.75993 0.91061 1.90239 1.54114 1.49627 1.46126 1.46047 1.14108 1.58745 1.06430 1.19782 0.89336 0.96596 0.83574 1.21329 1.20841 0.96654 1.19067 0.91531 1.24894 0.96630 0.95984 0.95789 1.69906 1.35662 1.22157 1.24605 0.86526 0.79846 0.82209 0.79239 1.20263 1.20958 1.19545 1.18089 0.93058 0.97959 0.84167 1.21015 0.94647 1.01396 0.96611 1.20862 0.99606 1.03276 0.91706 1.17735 0.93749 1.07147 0.78370 1.91423 1.90221 1.94753 1.36814 1.21054 0.93788 1.02964 0.97923 1.22724 1.04045 1.00672 0.89973 0.76811 0.91900 0.87798 0.90582 0.89962 0.91922 0.92488 0.91971 0.91940 0.91917 0.88261 0.93478 0.93649 0.92224 0.83251 0.85180 0.85465 0.79550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.40 19.25 29.55 0.57 -1.83 16 2 C -0.16 -2.15 12.21 -37.12 -0.45 -2.61 16 3 C 0.15 2.00 4.71 -6.61 -0.03 1.97 16 4 N -0.51 -7.84 4.30 -231.52 -0.99 -8.84 16 5 C 0.05 0.67 5.47 -3.82 -0.02 0.65 16 6 C -0.20 -2.57 9.18 37.16 0.34 -2.23 16 7 C 0.07 1.18 1.61 -68.87 -0.11 1.07 16 8 H 0.08 1.40 4.06 -51.93 -0.21 1.19 16 9 C -0.15 -2.43 8.57 37.16 0.32 -2.11 16 10 C 0.53 9.97 5.81 -10.99 -0.06 9.91 16 11 O -0.52 -10.48 11.94 5.55 0.07 -10.41 16 12 N -0.53 -10.50 2.69 -114.72 -0.31 -10.81 16 13 C 0.23 4.78 4.34 -5.19 -0.02 4.75 16 14 C -0.54 -12.38 7.11 -34.44 -0.24 -12.62 16 15 H 0.07 1.58 7.46 -52.49 -0.39 1.19 16 16 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -22.09 13.29 55.43 0.74 -21.35 16 18 Si 0.89 18.93 29.54 -169.99 -5.02 13.91 16 19 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 22 C 0.16 3.17 6.48 -83.66 -0.54 2.62 16 23 C -0.12 -2.14 9.07 -39.40 -0.36 -2.50 16 24 C -0.14 -2.25 10.02 -39.54 -0.40 -2.65 16 25 C 0.05 0.84 7.30 -39.41 -0.29 0.55 16 26 F -0.15 -2.51 17.27 2.25 0.04 -2.47 16 27 C -0.14 -2.29 10.02 -39.54 -0.40 -2.68 16 28 C -0.15 -2.83 9.05 -39.40 -0.36 -3.19 16 29 H 0.22 1.63 7.80 -54.09 -0.42 1.21 16 30 H 0.06 0.78 6.33 -51.93 -0.33 0.45 16 31 H 0.10 1.28 6.04 -51.93 -0.31 0.97 16 32 H 0.08 1.06 7.17 -51.93 -0.37 0.69 16 33 H 0.08 1.34 6.32 -51.93 -0.33 1.01 16 34 H 0.06 0.90 6.27 -51.93 -0.33 0.58 16 35 H 0.06 0.69 6.64 -51.93 -0.35 0.35 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.86 6.54 -51.93 -0.34 0.52 16 39 H 0.10 1.82 5.71 -51.93 -0.30 1.52 16 40 H 0.05 1.02 5.77 -51.93 -0.30 0.72 16 41 H 0.05 1.02 6.74 -51.93 -0.35 0.67 16 42 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 43 H 0.15 2.88 6.18 -52.49 -0.32 2.56 16 44 H 0.13 1.88 8.06 -52.49 -0.42 1.45 16 45 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 46 H 0.19 3.57 4.54 -56.19 -0.25 3.31 16 LS Contribution 370.28 15.07 5.58 5.58 Total: -1.00 -25.60 370.28 -7.78 -33.39 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -5.73 Total: 10.30 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -2.15 Total: -9.29 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: -0.57 Total: -41.00 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.41 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -25.60 -7.78 -33.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266946281.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.297 kcal (2) G-P(sol) polarization free energy of solvation -25.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds