Wall clock time and date at job start Tue Mar 31 2020 18:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46907 * 109.47518 * 259.51078 * 3 2 1 5 5 C 1.46903 * 110.99569 * 298.87576 * 4 3 2 6 6 C 1.53001 * 109.46884 * 301.10074 * 5 4 3 7 7 C 1.46900 * 111.00168 * 174.92338 * 4 3 2 8 8 H 1.08993 * 109.47457 * 65.62885 * 7 4 3 9 9 C 1.53003 * 109.46882 * 305.62990 * 7 4 3 10 10 C 1.50695 * 109.46815 * 185.63517 * 7 4 3 11 11 O 1.21291 * 120.00135 * 25.10763 * 10 7 4 12 12 N 1.34778 * 120.00059 * 205.10941 * 10 7 4 13 13 C 1.46497 * 119.99608 * 4.76365 * 12 10 7 14 14 C 1.50704 * 109.47365 * 266.33480 * 13 12 10 15 15 H 1.07996 * 119.99939 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00063 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99847 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99989 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47508 * 89.99694 * 18 16 14 20 20 H 1.48504 * 109.47282 * 209.99810 * 18 16 14 21 21 H 1.48508 * 109.47034 * 329.99567 * 18 16 14 22 22 C 1.40026 * 120.00486 * 184.76860 * 12 10 7 23 23 C 1.38852 * 120.04769 * 172.99864 * 22 12 10 24 24 C 1.38117 * 119.95313 * 180.25721 * 23 22 12 25 25 C 1.38471 * 120.04331 * 359.46286 * 24 23 22 26 26 F 1.35106 * 119.95247 * 180.23806 * 25 24 23 27 27 C 1.38474 * 120.09440 * 0.51280 * 25 24 23 28 28 C 1.38110 * 120.04186 * 359.76852 * 27 25 24 29 29 H 4.40887 * 5.52292 * 179.97438 * 4 1 2 30 30 H 1.09002 * 109.47595 * 139.50888 * 3 2 1 31 31 H 1.09007 * 109.47555 * 19.50918 * 3 2 1 32 32 H 1.08996 * 109.47021 * 61.10288 * 5 4 3 33 33 H 1.08999 * 109.46852 * 181.10326 * 5 4 3 34 34 H 1.09005 * 109.47197 * 305.01116 * 6 5 4 35 35 H 1.08995 * 109.47309 * 65.01767 * 6 5 4 36 36 H 1.08999 * 109.46449 * 185.01471 * 6 5 4 37 37 H 1.08996 * 109.47255 * 305.26732 * 9 7 4 38 38 H 1.08998 * 109.47176 * 65.26901 * 9 7 4 39 39 H 1.09001 * 109.46719 * 185.26585 * 9 7 4 40 40 H 1.08995 * 109.47608 * 26.33605 * 13 12 10 41 41 H 1.09004 * 109.47289 * 146.33748 * 13 12 10 42 42 H 0.97005 * 119.99746 * 179.97438 * 17 16 14 43 43 H 1.07997 * 120.02025 * 359.97438 * 23 22 12 44 44 H 1.08001 * 119.97359 * 179.72505 * 24 23 22 45 45 H 1.07996 * 119.97917 * 179.74340 * 27 25 24 46 46 H 1.08002 * 120.02174 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1356 0.2530 1.3619 5 6 2.6861 1.5643 1.8483 6 6 3.1960 2.6589 0.9088 7 6 4.5991 0.1418 1.4242 8 1 5.0495 0.9357 0.8286 9 6 5.0311 -1.2180 0.8717 10 6 5.0519 0.2691 2.8559 11 8 4.2945 -0.0162 3.7592 12 7 6.2986 0.7002 3.1325 13 6 7.1777 1.1438 2.0479 14 6 8.0342 -0.0092 1.5918 15 1 7.9340 -0.9758 2.0630 16 6 8.9464 0.1700 0.5736 17 7 9.0687 1.3472 0.0001 18 14 10.0074 -1.2594 0.0078 19 1 9.3114 -1.9925 -1.0800 20 1 11.3060 -0.7434 -0.4951 21 1 10.2487 -2.1788 1.1488 22 6 6.7536 0.7238 4.4566 23 6 8.0804 1.0277 4.7305 24 6 8.5284 1.0453 6.0369 25 6 7.6527 0.7709 7.0738 26 9 8.0917 0.7933 8.3513 27 6 6.3289 0.4680 6.8029 28 6 5.8783 0.4438 5.4976 29 1 -1.0500 0.0002 0.0000 30 1 3.0090 0.7824 -0.6673 31 1 3.0098 -0.9679 -0.3432 32 1 1.5967 1.5876 1.8760 33 1 3.0788 1.7340 2.8508 34 1 4.2788 2.5790 0.8116 35 1 2.7335 2.5412 -0.0711 36 1 2.9390 3.6365 1.3167 37 1 4.5081 -2.0105 1.4069 38 1 4.7868 -1.2734 -0.1891 39 1 6.1064 -1.3387 1.0036 40 1 6.5738 1.5002 1.2134 41 1 7.8164 1.9517 2.4052 42 1 9.7108 1.4734 -0.7160 43 1 8.7627 1.2458 3.9222 44 1 9.5615 1.2773 6.2500 45 1 5.6485 0.2503 7.6128 46 1 4.8459 0.2071 5.2866 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266946281.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:51 Heat of formation + Delta-G solvation = 21.195069 kcal Electronic energy + Delta-G solvation = -29395.523283 eV Core-core repulsion = 25395.098815 eV Total energy + Delta-G solvation = -4000.424468 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.77597 -42.06924 -39.94104 -38.50634 -36.93438 -34.58863 -34.15743 -33.10311 -32.04119 -30.88623 -29.80544 -29.07502 -27.63954 -25.31707 -25.09216 -23.84026 -23.51792 -22.19770 -20.03312 -18.98965 -18.70616 -18.64346 -18.46158 -17.83647 -17.10082 -16.89042 -16.59624 -16.49341 -16.31104 -15.82877 -15.48907 -15.45120 -14.93718 -14.50301 -14.34288 -14.25800 -14.06176 -13.94305 -13.81496 -13.70583 -13.48694 -13.34818 -13.20186 -12.95090 -12.83946 -12.70619 -12.45459 -12.38080 -12.12660 -12.01622 -11.88644 -11.73686 -11.33503 -11.02035 -10.80240 -10.61541 -10.20109 -10.02152 -9.28228 -8.76541 -8.19910 -6.33748 0.14942 0.33880 1.42911 1.47540 1.53681 1.58161 1.67154 1.97704 2.08005 2.41783 2.77803 3.03970 3.11053 3.37343 3.44054 3.55377 3.92778 3.98044 3.99366 4.08185 4.12249 4.28475 4.35500 4.38087 4.41261 4.46720 4.54761 4.55556 4.79453 4.85624 4.90338 4.92757 4.97932 5.07128 5.11104 5.14158 5.22276 5.27177 5.31123 5.36385 5.37506 5.65735 5.70443 5.88137 5.96868 5.98649 6.16966 6.40285 6.75567 6.75895 7.15646 7.36726 8.84455 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008121 B = 0.005163 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3446.878677 B = 5422.324747 C = 8052.928017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.210 4.210 3 C 0.153 3.847 4 N -0.521 5.521 5 C 0.051 3.949 6 C -0.188 4.188 7 C 0.079 3.921 8 H 0.074 0.926 9 C -0.145 4.145 10 C 0.523 3.477 11 O -0.536 6.536 12 N -0.538 5.538 13 C 0.242 3.758 14 C -0.533 4.533 15 H 0.056 0.944 16 C 0.036 3.964 17 N -0.913 5.913 18 Si 0.945 3.055 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.141 3.859 23 C -0.127 4.127 24 C -0.128 4.128 25 C 0.051 3.949 26 F -0.147 7.147 27 C -0.130 4.130 28 C -0.162 4.162 29 H 0.248 0.752 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.043 0.957 41 H 0.030 0.970 42 H 0.269 0.731 43 H 0.136 0.864 44 H 0.154 0.846 45 H 0.153 0.847 46 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.612 0.144 1.427 9.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.210 4.210 3 C 0.027 3.973 4 N -0.246 5.246 5 C -0.077 4.077 6 C -0.247 4.247 7 C -0.032 4.032 8 H 0.091 0.909 9 C -0.203 4.203 10 C 0.314 3.686 11 O -0.415 6.415 12 N -0.258 5.258 13 C 0.122 3.878 14 C -0.572 4.572 15 H 0.074 0.926 16 C -0.166 4.166 17 N -0.552 5.552 18 Si 0.771 3.229 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.199 1.199 22 C 0.046 3.954 23 C -0.147 4.147 24 C -0.147 4.147 25 C 0.031 3.969 26 F -0.126 7.126 27 C -0.149 4.149 28 C -0.181 4.181 29 H 0.265 0.735 30 H 0.087 0.913 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.078 0.922 43 H 0.154 0.846 44 H 0.172 0.828 45 H 0.171 0.829 46 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -10.083 -0.262 2.001 10.283 hybrid contribution 1.371 0.154 -0.708 1.551 sum -8.712 -0.108 1.292 8.808 Atomic orbital electron populations 1.25637 0.96596 1.00047 0.98212 1.23001 0.94534 1.01441 1.02053 1.19160 0.85601 1.03282 0.89224 1.62011 1.08391 1.31370 1.22814 1.22156 1.01065 0.86287 0.98186 1.22389 1.00978 1.00275 1.01016 1.21485 0.88515 1.01277 0.91939 0.90850 1.21917 1.03147 0.93462 1.01743 1.20850 0.80396 0.75405 0.91974 1.90229 1.54276 1.50223 1.46782 1.46005 1.14245 1.59111 1.06395 1.19450 0.88995 0.95581 0.83747 1.21366 1.20731 0.96489 1.18583 0.92591 1.25430 0.97577 0.97585 0.95985 1.69982 1.36470 1.23490 1.25249 0.85737 0.78478 0.79923 0.78722 1.19573 1.21087 1.19917 1.18369 0.93793 0.99030 0.84256 1.20943 0.94192 1.02446 0.97151 1.21067 1.00804 1.01975 0.90847 1.17764 0.93798 1.06784 0.78569 1.91442 1.90151 1.94671 1.36350 1.21278 0.94233 1.01542 0.97829 1.22648 1.03585 1.01371 0.90509 0.73546 0.91322 0.87281 0.89786 0.92176 0.93676 0.91315 0.90787 0.91892 0.89558 0.90599 0.93907 0.95200 0.92225 0.84600 0.82832 0.82902 0.80309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.75 19.25 74.32 1.43 -2.31 16 2 C -0.21 -5.14 12.21 31.12 0.38 -4.76 16 3 C 0.15 3.89 4.71 84.50 0.40 4.29 16 4 N -0.52 -15.82 4.30 -886.40 -3.81 -19.63 16 5 C 0.05 1.47 5.47 86.30 0.47 1.94 16 6 C -0.19 -4.84 9.18 71.98 0.66 -4.18 16 7 C 0.08 2.66 1.61 44.17 0.07 2.73 16 8 H 0.07 2.60 4.06 -2.39 -0.01 2.59 16 9 C -0.15 -4.68 8.57 71.98 0.62 -4.06 16 10 C 0.52 20.28 5.81 87.66 0.51 20.79 16 11 O -0.54 -21.89 11.94 -3.06 -0.04 -21.93 16 12 N -0.54 -21.82 2.69 -635.24 -1.71 -23.52 16 13 C 0.24 10.57 4.34 85.64 0.37 10.94 16 14 C -0.53 -24.89 7.11 25.60 0.18 -24.71 16 15 H 0.06 2.71 7.46 -2.91 -0.02 2.69 16 16 C 0.04 1.71 5.46 84.65 0.46 2.17 16 17 N -0.91 -46.04 13.29 21.45 0.28 -45.75 16 18 Si 0.95 38.83 29.54 68.60 2.03 40.86 16 19 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 20 H -0.29 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 C 0.14 5.56 6.48 38.13 0.25 5.81 16 23 C -0.13 -4.72 9.07 22.39 0.20 -4.52 16 24 C -0.13 -4.12 10.02 22.30 0.22 -3.89 16 25 C 0.05 1.62 7.30 22.38 0.16 1.79 16 26 F -0.15 -4.48 17.27 44.97 0.78 -3.71 16 27 C -0.13 -4.11 10.02 22.30 0.22 -3.89 16 28 C -0.16 -5.90 9.05 22.39 0.20 -5.70 16 29 H 0.25 2.83 7.80 -4.42 -0.03 2.80 16 30 H 0.07 1.64 6.33 -2.39 -0.02 1.63 16 31 H 0.11 2.58 6.04 -2.38 -0.01 2.57 16 32 H 0.08 2.27 7.17 -2.39 -0.02 2.26 16 33 H 0.06 1.99 6.32 -2.39 -0.02 1.98 16 34 H 0.04 1.32 6.27 -2.38 -0.01 1.30 16 35 H 0.07 1.60 6.64 -2.39 -0.02 1.58 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.09 2.32 6.54 -2.39 -0.02 2.30 16 39 H 0.08 2.82 5.71 -2.39 -0.01 2.81 16 40 H 0.04 1.92 5.77 -2.39 -0.01 1.90 16 41 H 0.03 1.40 6.74 -2.38 -0.02 1.38 16 42 H 0.27 12.99 8.31 -92.70 -0.77 12.22 16 43 H 0.14 5.41 6.18 -2.91 -0.02 5.39 16 44 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 45 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 46 H 0.18 6.91 4.54 -61.64 -0.28 6.63 16 Total: -1.00 -54.28 370.28 5.10 -49.17 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: 0.75 Total: 32.07 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 6.82 Total: -7.56 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -5.23 Total: -88.90 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.04 Total: -21.93 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.78 Total: -3.71 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -54.28 5.10 -49.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266946281.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.368 kcal (2) G-P(sol) polarization free energy of solvation -54.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds